Wall clock time and date at job start Mon Mar 30 2020 03:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47548 * 2 1 4 4 C 1.53004 * 109.47195 * 120.00186 * 2 1 3 5 5 C 1.52999 * 109.47396 * 174.14228 * 4 2 1 6 6 H 1.09001 * 110.84501 * 51.93316 * 5 4 2 7 7 S 1.83960 * 110.78630 * 288.52126 * 5 4 2 8 8 C 1.83952 * 94.80382 * 207.23062 * 7 5 4 9 9 C 1.54258 * 102.58300 * 34.49447 * 8 7 5 10 10 H 1.09005 * 108.75610 * 214.73175 * 9 8 7 11 11 C 1.50696 * 108.87020 * 96.28834 * 9 8 7 12 12 H 1.08000 * 120.00424 * 236.92450 * 11 9 8 13 13 C 1.37878 * 119.99766 * 57.20004 * 11 9 8 14 14 N 1.31514 * 120.00310 * 359.72852 * 13 11 9 15 15 Si 1.86806 * 119.99973 * 179.72204 * 13 11 9 16 16 H 1.48498 * 109.46896 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.46941 * 119.99697 * 15 13 11 18 18 H 1.48494 * 109.47132 * 240.00165 * 15 13 11 19 19 C 1.52331 * 112.58722 * 335.46949 * 9 8 7 20 20 H 1.08993 * 108.87056 * 120.81787 * 19 9 8 21 21 N 1.46907 * 108.87071 * 239.32668 * 19 9 8 22 22 H 1.08996 * 109.47793 * 179.29011 * 1 2 3 23 23 H 1.08997 * 109.46972 * 299.29111 * 1 2 3 24 24 H 1.08999 * 109.47243 * 59.28606 * 1 2 3 25 25 H 1.09003 * 109.47216 * 239.99908 * 2 1 3 26 26 H 1.08997 * 109.47140 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46927 * 299.99926 * 3 2 1 28 28 H 1.08999 * 109.46590 * 60.00075 * 3 2 1 29 29 H 1.09003 * 109.46967 * 54.14452 * 4 2 1 30 30 H 1.08999 * 109.46825 * 294.14530 * 4 2 1 31 31 H 1.09006 * 110.79184 * 276.21808 * 8 7 5 32 32 H 1.09002 * 110.78840 * 152.76418 * 8 7 5 33 33 H 0.97001 * 120.00261 * 180.02562 * 14 13 11 34 34 H 1.00892 * 110.99829 * 298.54905 * 21 19 9 35 35 H 1.00901 * 110.99714 * 62.50015 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5629 -0.8501 1.1779 6 1 4.0251 0.1172 0.9807 7 16 4.0549 -2.0807 -0.0979 8 6 5.6416 -2.5247 0.7202 9 6 5.2905 -2.4115 2.2180 10 1 6.1644 -2.0439 2.7560 11 6 4.9379 -3.7802 2.7407 12 1 3.9781 -3.9499 3.2059 13 6 5.8428 -4.8146 2.6302 14 7 7.0116 -4.6081 2.0638 15 14 5.4087 -6.5094 3.2851 16 1 4.0446 -6.4791 3.8711 17 1 5.4480 -7.4942 2.1745 18 1 6.3882 -6.9021 4.3299 19 6 4.1214 -1.4696 2.4754 20 1 3.3252 -2.0236 2.9726 21 7 4.5698 -0.3866 3.3609 22 1 -0.3634 -1.0275 -0.0127 23 1 -0.3633 0.5028 0.8963 24 1 -0.3634 0.5249 -0.8835 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9562 0.8900 29 1 1.5936 -1.7143 1.3032 30 1 1.7648 -0.1505 2.1361 31 1 6.4263 -1.8172 0.4522 32 1 5.9352 -3.5436 0.4677 33 1 7.6481 -5.3359 1.9857 34 1 4.8753 -0.7504 4.2510 35 1 5.2975 0.1594 2.9245 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259845435.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:23 Heat of formation + Delta-G solvation = -43.557534 kcal Electronic energy + Delta-G solvation = -14625.773027 eV Core-core repulsion = 12361.923322 eV Total energy + Delta-G solvation = -2263.849705 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.00719 -37.09456 -34.74834 -31.58984 -30.98093 -27.96946 -27.44989 -25.72313 -23.72753 -21.01326 -20.59387 -18.58237 -17.48796 -16.87466 -16.43201 -16.09361 -15.53340 -14.97777 -14.69561 -14.31498 -14.07505 -13.88555 -13.32318 -13.14584 -12.94012 -12.82898 -12.80402 -12.50727 -12.21702 -11.97544 -11.92150 -11.55371 -11.52351 -11.29838 -11.11141 -10.71479 -10.39864 -9.52548 -8.46396 -8.18658 -6.31506 1.22843 1.36038 1.40082 1.49834 1.67126 2.37995 3.09379 3.61410 3.92734 4.00133 4.10121 4.25387 4.35209 4.42329 4.53190 4.68580 4.80522 4.85006 4.87514 4.93358 4.99744 5.07890 5.16578 5.18687 5.36549 5.47552 5.53749 5.57062 5.58027 5.73738 6.11939 6.33145 6.62031 6.76281 7.36666 8.85634 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.036245 B = 0.007688 C = 0.007534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.344193 B = 3641.373155 C = 3715.568036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 C -0.141 4.141 4 C -0.084 4.084 5 C 0.001 3.999 6 H 0.098 0.902 7 S -0.359 6.359 8 C -0.022 4.022 9 C 0.012 3.988 10 H 0.013 0.987 11 C -0.516 4.516 12 H 0.053 0.947 13 C 0.014 3.986 14 N -0.916 5.916 15 Si 0.951 3.049 16 H -0.268 1.268 17 H -0.284 1.284 18 H -0.279 1.279 19 C 0.102 3.898 20 H 0.070 0.930 21 N -0.831 5.831 22 H 0.048 0.952 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.262 0.738 34 H 0.344 0.656 35 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.127 9.490 -1.436 12.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 C -0.199 4.199 4 C -0.123 4.123 5 C -0.128 4.128 6 H 0.116 0.884 7 S -0.134 6.134 8 C -0.171 4.171 9 C -0.009 4.009 10 H 0.031 0.969 11 C -0.554 4.554 12 H 0.071 0.929 13 C -0.185 4.185 14 N -0.556 5.556 15 Si 0.777 3.223 16 H -0.192 1.192 17 H -0.210 1.210 18 H -0.205 1.205 19 C -0.011 4.011 20 H 0.088 0.912 21 N -0.360 5.360 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.156 0.844 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.262 9.284 -2.552 13.360 hybrid contribution 1.947 -1.499 1.161 2.718 sum -7.315 7.785 -1.391 10.773 Atomic orbital electron populations 1.21778 0.93882 1.01671 1.02444 1.21121 0.96690 0.96727 0.97000 1.21825 1.00660 0.95080 1.02289 1.21515 0.90683 1.00791 0.99317 1.23905 0.99938 0.97123 0.91801 0.88390 1.87418 1.30904 1.55486 1.39570 1.24057 0.91457 1.03323 0.98237 1.20002 0.93923 0.95808 0.91207 0.96861 1.21542 1.01107 0.95029 1.37730 0.92871 1.25676 0.94939 1.02350 0.95487 1.70011 1.07640 1.33374 1.44555 0.85599 0.78456 0.80197 0.78052 1.19192 1.21017 1.20495 1.22095 0.96257 0.90111 0.92679 0.91165 1.59179 1.45169 1.24584 1.07046 0.93276 0.91803 0.91723 0.92669 0.93463 0.91902 0.91795 0.92611 0.89606 0.93079 0.89367 0.92852 0.84369 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.19 71.98 0.66 -2.30 16 2 C -0.10 -2.47 2.87 -10.79 -0.03 -2.50 16 3 C -0.14 -3.13 8.99 71.98 0.65 -2.48 16 4 C -0.08 -2.52 4.03 30.60 0.12 -2.39 16 5 C 0.00 0.03 2.79 31.02 0.09 0.12 16 6 H 0.10 3.20 6.19 -2.39 -0.01 3.19 16 7 S -0.36 -15.04 21.95 -56.49 -1.24 -16.28 16 8 C -0.02 -1.06 6.41 72.41 0.46 -0.59 16 9 C 0.01 0.57 2.37 -11.34 -0.03 0.55 16 10 H 0.01 0.68 7.79 -2.38 -0.02 0.66 16 11 C -0.52 -27.30 8.47 25.60 0.22 -27.08 16 12 H 0.05 2.83 7.19 -2.91 -0.02 2.81 16 13 C 0.01 0.77 5.03 84.66 0.43 1.20 16 14 N -0.92 -51.30 11.44 21.45 0.25 -51.06 16 15 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 C 0.10 3.95 2.98 45.12 0.13 4.09 16 20 H 0.07 2.96 6.78 -2.39 -0.02 2.95 16 21 N -0.83 -26.97 8.94 -167.82 -1.50 -28.47 16 22 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.05 1.63 7.40 -2.39 -0.02 1.61 16 26 H 0.05 1.13 6.47 -2.39 -0.02 1.12 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.09 4.85 5.96 -2.39 -0.01 4.83 16 33 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 34 H 0.34 11.05 9.04 -89.70 -0.81 10.24 16 35 H 0.34 10.20 8.91 -89.69 -0.80 9.40 16 Total: -1.00 -56.26 285.48 1.70 -54.56 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -0.53 Total: 27.44 kcal Atomic # 6 Polarization: -34.10 SS G_CDS: 2.70 Total: -31.39 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -1.25 Total: -79.53 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -15.04 SS G_CDS: -1.24 Total: -16.28 kcal Total: -56.26 1.70 -54.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259845435.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.003 kcal (2) G-P(sol) polarization free energy of solvation -56.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds