Wall clock time and date at job start Mon Mar 30 2020 02:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.47121 * 2 1 4 4 N 1.35638 * 125.35287 * 264.97351 * 3 2 1 5 5 H 0.96996 * 124.69622 * 0.04425 * 4 3 2 6 6 C 1.38153 * 110.61517 * 180.02562 * 4 3 2 7 7 C 1.39120 * 132.80945 * 179.97438 * 6 4 3 8 8 C 1.37863 * 119.97347 * 180.02562 * 7 6 4 9 9 C 1.38681 * 120.62227 * 0.26204 * 8 7 6 10 10 C 1.50699 * 119.86920 * 179.74216 * 9 8 7 11 11 C 1.37876 * 120.24811 * 359.48384 * 9 8 7 12 12 C 1.39186 * 119.69685 * 0.50840 * 11 9 8 13 13 C 1.38893 * 125.35798 * 84.99450 * 3 2 1 14 14 C 1.40889 * 126.93207 * 0.02562 * 13 3 2 15 15 H 1.08007 * 120.00337 * 30.98237 * 14 13 3 16 16 C 1.39736 * 120.00101 * 210.98974 * 14 13 3 17 17 N 1.31050 * 119.99956 * 19.42235 * 16 14 13 18 18 Si 1.86800 * 120.00193 * 199.42975 * 16 14 13 19 19 H 1.48506 * 109.47027 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47448 * 119.99561 * 18 16 14 21 21 H 1.48497 * 109.47106 * 239.99717 * 18 16 14 22 22 H 1.08999 * 109.47279 * 300.00071 * 1 2 3 23 23 H 1.09001 * 109.46642 * 60.00166 * 1 2 3 24 24 H 1.08998 * 109.47111 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47279 * 239.99929 * 2 1 3 26 26 H 1.09005 * 109.47119 * 119.99816 * 2 1 3 27 27 H 1.07996 * 120.01300 * 359.97438 * 7 6 4 28 28 H 1.07993 * 119.69199 * 179.97438 * 8 7 6 29 29 H 1.09000 * 109.46902 * 90.00271 * 10 9 8 30 30 H 1.09001 * 109.46715 * 209.99824 * 10 9 8 31 31 H 1.08992 * 109.47328 * 329.99907 * 10 9 8 32 32 H 1.08002 * 120.14737 * 180.26004 * 11 9 8 33 33 H 0.97008 * 120.00080 * 174.97550 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.3854 2.1285 -1.1020 5 1 2.3498 1.7900 -2.0103 6 6 2.8022 3.3982 -0.7519 7 6 3.2559 4.4830 -1.4955 8 6 3.6114 5.6535 -0.8597 9 6 3.5271 5.7615 0.5204 10 6 3.9257 7.0470 1.1983 11 6 3.0749 4.6991 1.2739 12 6 2.7127 3.5118 0.6442 13 6 2.2071 2.2116 1.1284 14 6 1.9543 1.8464 2.4655 15 1 2.0753 0.8193 2.7769 16 6 1.5468 2.8130 3.3887 17 7 1.0366 3.9451 2.9699 18 14 1.7296 2.4914 5.2197 19 1 2.3279 1.1485 5.4292 20 1 2.6113 3.5255 5.8184 21 1 0.3943 2.5444 5.8672 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.3302 4.4079 -2.5702 28 1 3.9634 6.4925 -1.4413 29 1 3.0573 7.7013 1.2758 30 1 4.3063 6.8287 2.1960 31 1 4.7016 7.5408 0.6134 32 1 3.0059 4.7865 2.3481 33 1 0.6868 4.5854 3.6093 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259953145.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:47 Heat of formation + Delta-G solvation = 15.323365 kcal Electronic energy + Delta-G solvation = -15654.694766 eV Core-core repulsion = 13257.954377 eV Total energy + Delta-G solvation = -2396.740389 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.43438 -37.92643 -35.45811 -34.06083 -32.05348 -31.66115 -29.62340 -26.99053 -26.42407 -24.41760 -22.22377 -21.42906 -20.67877 -18.44101 -17.68360 -16.63812 -16.32320 -15.66301 -15.09034 -14.95768 -14.66915 -14.24437 -14.20794 -14.05860 -13.73726 -13.03176 -12.93767 -12.84189 -12.73969 -12.56787 -12.22456 -11.95288 -11.83332 -11.62290 -11.50481 -11.09121 -10.75898 -9.94315 -8.51042 -8.43262 -8.07684 -5.86295 0.66245 1.07402 1.36570 1.42109 1.54082 2.22104 2.35584 2.82918 3.19232 3.61000 4.20803 4.30899 4.39709 4.42154 4.55517 4.68686 4.72679 4.93010 4.94049 4.97176 5.04863 5.07727 5.25618 5.30310 5.36304 5.47683 5.53392 5.56161 5.66408 5.87313 6.09869 6.26876 6.50734 6.51908 6.88376 7.13083 7.27179 7.44810 8.66320 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.017441 B = 0.013803 C = 0.008140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.062046 B = 2028.087403 C = 3438.908100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.019 4.019 3 C -0.105 4.105 4 N -0.582 5.582 5 H 0.409 0.591 6 C 0.070 3.930 7 C -0.160 4.160 8 C -0.105 4.105 9 C -0.175 4.175 10 C -0.089 4.089 11 C -0.042 4.042 12 C -0.136 4.136 13 C 0.018 3.982 14 C -0.485 4.485 15 H 0.066 0.934 16 C 0.039 3.961 17 N -0.842 5.842 18 Si 0.959 3.041 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.272 1.272 22 H 0.031 0.969 23 H 0.043 0.957 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.134 0.866 28 H 0.145 0.855 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.561 0.303 -5.222 5.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.057 4.057 3 C -0.210 4.210 4 N -0.186 5.186 5 H 0.245 0.755 6 C -0.040 4.040 7 C -0.181 4.181 8 C -0.124 4.124 9 C -0.177 4.177 10 C -0.146 4.146 11 C -0.061 4.061 12 C -0.142 4.142 13 C 0.012 3.988 14 C -0.518 4.518 15 H 0.084 0.916 16 C -0.172 4.172 17 N -0.472 5.472 18 Si 0.783 3.217 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.198 1.198 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.152 0.848 28 H 0.163 0.837 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.480 0.401 -5.216 5.789 hybrid contribution -0.252 -0.210 0.694 0.768 sum 2.227 0.190 -4.522 5.045 Atomic orbital electron populations 1.21623 0.95433 1.01245 1.00637 1.19623 0.95437 0.89201 1.01416 1.20751 1.17339 0.97588 0.85304 1.40829 1.59915 1.09998 1.07877 0.75462 1.18567 1.03381 0.87587 0.94440 1.20125 1.06922 0.92042 0.99035 1.20757 1.01161 0.97125 0.93381 1.19905 1.06568 0.96760 0.94498 1.20536 1.01063 0.93436 0.99517 1.20521 0.95156 0.91692 0.98695 1.19619 1.05215 0.96654 0.92760 1.18228 0.97629 0.90290 0.92687 1.18659 1.44723 0.95219 0.93196 0.91576 1.26314 0.92959 0.93986 1.03963 1.70040 1.31031 1.09024 1.37058 0.85505 0.78485 0.79138 0.78607 1.18572 1.19888 1.19766 0.94962 0.93738 0.90767 0.90948 0.92013 0.84838 0.83721 0.92082 0.93165 0.90042 0.88773 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 9.89 71.98 0.71 -3.96 16 2 C -0.02 -0.70 6.22 29.85 0.19 -0.52 16 3 C -0.11 -4.94 6.48 42.13 0.27 -4.67 16 4 N -0.58 -24.62 5.99 -173.34 -1.04 -25.65 16 5 H 0.41 13.75 8.96 -92.71 -0.83 12.92 16 6 C 0.07 3.24 7.23 38.87 0.28 3.52 16 7 C -0.16 -6.22 10.07 22.39 0.23 -5.99 16 8 C -0.11 -3.91 9.67 22.29 0.22 -3.69 16 9 C -0.18 -7.33 5.88 -19.84 -0.12 -7.45 16 10 C -0.09 -2.91 10.00 71.24 0.71 -2.20 16 11 C -0.04 -2.14 8.40 22.41 0.19 -1.95 16 12 C -0.14 -7.30 5.78 -20.04 -0.12 -7.42 16 13 C 0.02 0.98 5.72 -19.98 -0.11 0.86 16 14 C -0.48 -27.14 8.96 23.28 0.21 -26.93 16 15 H 0.07 3.61 7.63 -2.91 -0.02 3.59 16 16 C 0.04 2.07 4.89 85.17 0.42 2.49 16 17 N -0.84 -46.90 10.32 21.80 0.22 -46.67 16 18 Si 0.96 41.36 29.60 68.60 2.03 43.39 16 19 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 22 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.06 2.42 7.77 -2.38 -0.02 2.40 16 27 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 28 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.05 1.65 8.08 -2.39 -0.02 1.63 16 31 H 0.08 2.13 8.08 -2.39 -0.02 2.11 16 32 H 0.09 5.13 6.32 -2.91 -0.02 5.11 16 33 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 Total: -1.00 -64.78 278.41 4.57 -60.21 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.28 Total: 26.63 kcal Atomic # 6 Polarization: -60.98 SS G_CDS: 3.07 Total: -57.90 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -0.81 Total: -72.33 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -64.78 4.57 -60.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259953145.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.537 kcal (2) G-P(sol) polarization free energy of solvation -64.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds