Wall clock time and date at job start Mon Mar 30 2020 02:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.46960 * 2 1 4 4 C 1.37929 * 120.15221 * 265.75066 * 3 2 1 5 5 C 1.38626 * 120.25210 * 179.97438 * 4 3 2 6 6 C 1.37904 * 120.62434 * 359.55472 * 5 4 3 7 7 C 1.39081 * 119.97048 * 0.02562 * 6 5 4 8 8 C 1.39143 * 120.15729 * 84.99991 * 3 2 1 9 9 C 1.47684 * 133.77834 * 359.95671 * 8 3 2 10 10 C 1.40892 * 126.92796 * 0.05712 * 9 8 3 11 11 H 1.08000 * 120.00014 * 339.11650 * 10 9 8 12 12 C 1.39732 * 119.99988 * 159.11865 * 10 9 8 13 13 N 1.31052 * 120.00024 * 165.58946 * 12 10 9 14 14 Si 1.86805 * 119.99952 * 345.58806 * 12 10 9 15 15 H 1.48507 * 109.47146 * 90.42721 * 14 12 10 16 16 H 1.48494 * 109.47150 * 210.42588 * 14 12 10 17 17 H 1.48496 * 109.46994 * 330.43060 * 14 12 10 18 18 C 1.38896 * 106.14027 * 180.02562 * 9 8 3 19 19 N 1.35637 * 109.29209 * 359.97438 * 18 9 8 20 20 C 1.46502 * 124.69369 * 180.02562 * 19 18 9 21 21 H 1.09004 * 109.47310 * 59.99806 * 1 2 3 22 22 H 1.08996 * 109.47275 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47318 * 300.00496 * 1 2 3 24 24 H 1.08996 * 109.46910 * 239.99718 * 2 1 3 25 25 H 1.09001 * 109.46751 * 119.99704 * 2 1 3 26 26 H 1.08001 * 119.87325 * 359.49381 * 4 3 2 27 27 H 1.08006 * 119.68565 * 179.56659 * 5 4 3 28 28 H 1.08000 * 120.01662 * 180.02562 * 6 5 4 29 29 H 0.97000 * 119.99621 * 180.02562 * 13 12 10 30 30 H 1.07993 * 125.35346 * 179.97438 * 18 9 8 31 31 H 1.09005 * 109.46740 * 90.02449 * 20 19 18 32 32 H 1.09004 * 109.46602 * 330.03514 * 20 19 18 33 33 H 1.08987 * 109.47778 * 210.03145 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3465 2.0445 -1.1894 5 6 2.8083 3.3516 -1.1918 6 6 2.9511 4.0484 -0.0104 7 6 2.6311 3.4395 1.1984 8 6 2.1664 2.1148 1.1985 9 6 1.9128 1.7710 2.6122 10 6 1.4329 0.5443 3.1121 11 1 0.8997 -0.1326 2.4610 12 6 1.6466 0.2035 4.4503 13 7 0.9736 -0.7825 4.9909 14 14 2.8917 1.1535 5.4686 15 1 2.2172 2.2963 6.1353 16 1 3.4778 0.2565 6.4967 17 1 3.9696 1.6629 4.5834 18 6 2.2436 2.9006 3.3496 19 7 2.6680 3.8764 2.5085 20 6 3.1014 5.2107 2.9305 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.2398 1.5100 -2.1217 27 1 3.0583 3.8289 -2.1279 28 1 3.3113 5.0665 -0.0237 29 1 1.1218 -1.0188 5.9199 30 1 2.1739 2.9882 4.4238 31 1 4.1739 5.1998 3.1249 32 1 2.5704 5.4947 3.8392 33 1 2.8824 5.9303 2.1418 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260171173.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:42 Heat of formation + Delta-G solvation = 45.068658 kcal Electronic energy + Delta-G solvation = -15796.411660 eV Core-core repulsion = 13400.961124 eV Total energy + Delta-G solvation = -2395.450536 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.07150 -36.46033 -34.06195 -32.78139 -31.32429 -28.66563 -28.07755 -26.70130 -23.66868 -22.93140 -21.02764 -20.31027 -18.89100 -16.85554 -16.02583 -15.13689 -14.73565 -14.43953 -14.21021 -13.74214 -13.43149 -13.05599 -12.48295 -12.40136 -12.14201 -11.74994 -11.63330 -11.28469 -11.10713 -10.94602 -10.66148 -10.42304 -10.17637 -9.97851 -9.78216 -9.46241 -9.11261 -8.31218 -7.13812 -6.73623 -6.69353 -4.06014 2.06283 2.51882 3.07838 3.23213 3.36464 3.81276 3.93448 4.12772 4.69777 5.34119 5.39231 5.51663 5.61943 5.68051 5.81011 5.86985 5.92218 6.03328 6.12255 6.20731 6.37250 6.43584 6.65037 6.66400 6.81522 6.94952 6.98841 7.09783 7.23720 7.36502 7.66040 7.70467 7.91219 8.32622 8.40243 8.62233 8.86227 9.04791 10.34777 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.022241 B = 0.012940 C = 0.008647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.655585 B = 2163.301070 C = 3237.202547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.007 4.007 4 C -0.194 4.194 5 C -0.099 4.099 6 C -0.167 4.167 7 C 0.109 3.891 8 C -0.123 4.123 9 C 0.042 3.958 10 C -0.425 4.425 11 H 0.099 0.901 12 C 0.081 3.919 13 N -0.832 5.832 14 Si 0.905 3.095 15 H -0.277 1.277 16 H -0.297 1.297 17 H -0.247 1.247 18 C -0.177 4.177 19 N -0.475 5.475 20 C 0.090 3.910 21 H 0.043 0.957 22 H 0.048 0.952 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.089 0.911 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.279 0.721 30 H 0.140 0.860 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.782 6.265 -5.665 8.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.008 4.008 4 C -0.214 4.214 5 C -0.118 4.118 6 C -0.189 4.189 7 C -0.001 4.001 8 C -0.130 4.130 9 C 0.036 3.964 10 C -0.456 4.456 11 H 0.117 0.883 12 C -0.134 4.134 13 N -0.459 5.459 14 Si 0.734 3.266 15 H -0.204 1.204 16 H -0.225 1.225 17 H -0.171 1.171 18 C -0.296 4.296 19 N -0.160 5.160 20 C -0.054 4.054 21 H 0.062 0.938 22 H 0.067 0.933 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.157 0.843 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.779 6.341 -5.249 8.688 hybrid contribution 0.620 0.619 0.768 1.165 sum 3.399 6.960 -4.480 8.948 Atomic orbital electron populations 1.21674 0.95223 1.00871 1.01917 1.20579 0.96019 0.93348 1.02485 1.19241 0.95375 0.95009 0.91180 1.20446 1.08828 0.95711 0.96459 1.20442 1.00716 0.94705 0.95978 1.19724 1.09569 0.99320 0.90317 1.18180 1.02565 0.94651 0.84654 1.19163 1.06378 0.93452 0.93959 1.18234 0.96861 0.93022 0.88318 1.18795 1.30710 1.01101 0.94964 0.88282 1.25898 0.95365 0.94401 0.97690 1.69745 1.35426 1.26469 1.14269 0.86445 0.82964 0.78436 0.78775 1.20407 1.22465 1.17077 1.21501 1.24008 0.89873 0.94259 1.42846 1.57931 1.11340 1.03926 1.21622 0.99513 0.83576 1.00640 0.93817 0.93257 0.91469 0.92723 0.89252 0.87549 0.87441 0.88147 0.91057 0.84320 0.93016 0.91230 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.37 37.16 0.35 -2.21 16 2 C -0.09 -1.70 5.45 -27.88 -0.15 -1.85 16 3 C -0.01 -0.16 5.15 -104.40 -0.54 -0.70 16 4 C -0.19 -3.62 9.68 -39.55 -0.38 -4.00 16 5 C -0.10 -1.75 10.01 -39.56 -0.40 -2.15 16 6 C -0.17 -3.18 9.87 -39.39 -0.39 -3.57 16 7 C 0.11 2.43 6.77 -83.89 -0.57 1.86 16 8 C -0.12 -2.95 6.15 -104.90 -0.65 -3.59 16 9 C 0.04 1.08 5.63 -104.79 -0.59 0.49 16 10 C -0.42 -11.48 8.89 -38.02 -0.34 -11.82 16 11 H 0.10 2.72 5.04 -52.49 -0.26 2.46 16 12 C 0.08 2.17 5.51 -17.33 -0.10 2.07 16 13 N -0.83 -22.69 13.94 55.54 0.77 -21.92 16 14 Si 0.90 21.24 24.55 -169.99 -4.17 17.06 16 15 H -0.28 -6.29 6.68 56.52 0.38 -5.92 16 16 H -0.30 -6.81 7.11 56.52 0.40 -6.40 16 17 H -0.25 -5.96 6.58 56.52 0.37 -5.59 16 18 C -0.18 -4.32 8.66 -15.63 -0.14 -4.46 16 19 N -0.48 -10.37 3.15 -120.76 -0.38 -10.75 16 20 C 0.09 1.44 10.97 59.85 0.66 2.10 16 21 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.07 1.40 7.38 -51.92 -0.38 1.02 16 24 H 0.05 0.92 8.06 -51.93 -0.42 0.50 16 25 H 0.09 1.94 6.11 -51.93 -0.32 1.62 16 26 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 27 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 28 H 0.10 1.63 7.95 -52.49 -0.42 1.21 16 29 H 0.28 7.01 8.30 -40.82 -0.34 6.68 16 30 H 0.14 3.34 4.29 -52.49 -0.23 3.11 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 33 H 0.07 0.93 7.93 -51.94 -0.41 0.52 16 LS Contribution 267.87 15.07 4.04 4.04 Total: -1.00 -29.04 267.87 -7.13 -36.17 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.16 Total: 3.24 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: -3.23 Total: -27.83 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.39 Total: -32.67 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.17 Total: 17.06 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.04 -7.13 -36.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260171173.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.236 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds