Wall clock time and date at job start Mon Mar 30 2020 02:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.46960 * 2 1 4 4 C 1.37929 * 120.15221 * 265.75066 * 3 2 1 5 5 C 1.38626 * 120.25210 * 179.97438 * 4 3 2 6 6 C 1.37904 * 120.62434 * 359.55472 * 5 4 3 7 7 C 1.39081 * 119.97048 * 0.02562 * 6 5 4 8 8 C 1.39143 * 120.15729 * 84.99991 * 3 2 1 9 9 C 1.47684 * 133.77834 * 359.95671 * 8 3 2 10 10 C 1.40892 * 126.92796 * 0.05712 * 9 8 3 11 11 H 1.08000 * 120.00014 * 339.11650 * 10 9 8 12 12 C 1.39732 * 119.99988 * 159.11865 * 10 9 8 13 13 N 1.31052 * 120.00024 * 165.58946 * 12 10 9 14 14 Si 1.86805 * 119.99952 * 345.58806 * 12 10 9 15 15 H 1.48507 * 109.47146 * 90.42721 * 14 12 10 16 16 H 1.48494 * 109.47150 * 210.42588 * 14 12 10 17 17 H 1.48496 * 109.46994 * 330.43060 * 14 12 10 18 18 C 1.38896 * 106.14027 * 180.02562 * 9 8 3 19 19 N 1.35637 * 109.29209 * 359.97438 * 18 9 8 20 20 C 1.46502 * 124.69369 * 180.02562 * 19 18 9 21 21 H 1.09004 * 109.47310 * 59.99806 * 1 2 3 22 22 H 1.08996 * 109.47275 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47318 * 300.00496 * 1 2 3 24 24 H 1.08996 * 109.46910 * 239.99718 * 2 1 3 25 25 H 1.09001 * 109.46751 * 119.99704 * 2 1 3 26 26 H 1.08001 * 119.87325 * 359.49381 * 4 3 2 27 27 H 1.08006 * 119.68565 * 179.56659 * 5 4 3 28 28 H 1.08000 * 120.01662 * 180.02562 * 6 5 4 29 29 H 0.97000 * 119.99621 * 180.02562 * 13 12 10 30 30 H 1.07993 * 125.35346 * 179.97438 * 18 9 8 31 31 H 1.09005 * 109.46740 * 90.02449 * 20 19 18 32 32 H 1.09004 * 109.46602 * 330.03514 * 20 19 18 33 33 H 1.08987 * 109.47778 * 210.03145 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3465 2.0445 -1.1894 5 6 2.8083 3.3516 -1.1918 6 6 2.9511 4.0484 -0.0104 7 6 2.6311 3.4395 1.1984 8 6 2.1664 2.1148 1.1985 9 6 1.9128 1.7710 2.6122 10 6 1.4329 0.5443 3.1121 11 1 0.8997 -0.1326 2.4610 12 6 1.6466 0.2035 4.4503 13 7 0.9736 -0.7825 4.9909 14 14 2.8917 1.1535 5.4686 15 1 2.2172 2.2963 6.1353 16 1 3.4778 0.2565 6.4967 17 1 3.9696 1.6629 4.5834 18 6 2.2436 2.9006 3.3496 19 7 2.6680 3.8764 2.5085 20 6 3.1014 5.2107 2.9305 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.2398 1.5100 -2.1217 27 1 3.0583 3.8289 -2.1279 28 1 3.3113 5.0665 -0.0237 29 1 1.1218 -1.0188 5.9199 30 1 2.1739 2.9882 4.4238 31 1 4.1739 5.1998 3.1249 32 1 2.5704 5.4947 3.8392 33 1 2.8824 5.9303 2.1418 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260171173.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:42 Heat of formation + Delta-G solvation = 28.946016 kcal Electronic energy + Delta-G solvation = -15797.110791 eV Core-core repulsion = 13400.961124 eV Total energy + Delta-G solvation = -2396.149667 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.71158 -38.01449 -35.84651 -34.45799 -32.96881 -30.25571 -29.71143 -28.28188 -25.36050 -24.48830 -22.68691 -21.93063 -20.61022 -18.61868 -17.76029 -16.73362 -16.32074 -16.07083 -15.87277 -15.30124 -14.96897 -14.84935 -13.97618 -13.92877 -13.60250 -13.38639 -13.19738 -12.89045 -12.79570 -12.58661 -12.28882 -12.20946 -11.77311 -11.55611 -11.45562 -11.27861 -10.96887 -10.00108 -8.77169 -8.67371 -8.45364 -6.03374 0.47071 0.96819 1.19435 1.32671 1.47185 1.95317 2.19418 2.41550 3.05965 3.46300 4.00805 4.13153 4.20967 4.26839 4.40002 4.46732 4.52870 4.64752 4.67407 4.69927 4.86160 4.92414 5.02677 5.14172 5.24116 5.31554 5.40814 5.46247 5.55246 5.81597 5.96917 6.07697 6.22668 6.52010 6.63199 6.80545 7.02031 7.08262 8.41848 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.022241 B = 0.012940 C = 0.008647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.655585 B = 2163.301070 C = 3237.202547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 C -0.032 4.032 4 C -0.185 4.185 5 C -0.090 4.090 6 C -0.165 4.165 7 C 0.092 3.908 8 C -0.164 4.164 9 C 0.004 3.996 10 C -0.446 4.446 11 H 0.076 0.924 12 C 0.038 3.962 13 N -0.875 5.875 14 Si 0.960 3.040 15 H -0.264 1.264 16 H -0.288 1.288 17 H -0.259 1.259 18 C -0.169 4.169 19 N -0.485 5.485 20 C 0.081 3.919 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.029 0.971 24 H 0.085 0.915 25 H 0.053 0.947 26 H 0.139 0.861 27 H 0.154 0.846 28 H 0.135 0.865 29 H 0.284 0.716 30 H 0.140 0.860 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.091 8.820 -7.906 12.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.121 4.121 3 C -0.032 4.032 4 C -0.205 4.205 5 C -0.109 4.109 6 C -0.186 4.186 7 C -0.017 4.017 8 C -0.170 4.170 9 C -0.002 4.002 10 C -0.478 4.478 11 H 0.094 0.906 12 C -0.172 4.172 13 N -0.506 5.506 14 Si 0.787 3.213 15 H -0.190 1.190 16 H -0.216 1.216 17 H -0.184 1.184 18 C -0.291 4.291 19 N -0.170 5.170 20 C -0.061 4.061 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.048 0.952 24 H 0.103 0.897 25 H 0.072 0.928 26 H 0.157 0.843 27 H 0.171 0.829 28 H 0.153 0.847 29 H 0.094 0.906 30 H 0.157 0.843 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.095 8.931 -7.505 12.363 hybrid contribution 0.236 -0.046 1.223 1.246 sum 4.331 8.884 -6.282 11.711 Atomic orbital electron populations 1.21583 0.94736 1.01463 1.01005 1.20528 0.96448 0.93014 1.02107 1.19543 0.96437 0.95680 0.91580 1.20890 1.06664 0.96400 0.96499 1.21010 0.98393 0.94088 0.97405 1.20182 1.08349 1.00871 0.89220 1.18627 1.02859 0.94354 0.85870 1.19476 1.08416 0.95237 0.93914 1.18449 0.98268 0.93097 0.90390 1.18835 1.31788 1.01926 0.95260 0.90631 1.26531 0.96790 0.95351 0.98515 1.69796 1.37406 1.28453 1.14918 0.85593 0.80560 0.77761 0.77350 1.19045 1.21578 1.18359 1.21604 1.22430 0.90461 0.94559 1.43131 1.57722 1.12649 1.03540 1.21979 1.00556 0.81298 1.02221 0.91603 0.91986 0.95214 0.89692 0.92832 0.84344 0.82865 0.84732 0.90614 0.84308 0.91457 0.90045 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 9.37 71.98 0.67 -4.20 16 2 C -0.08 -3.30 5.45 29.85 0.16 -3.13 16 3 C -0.03 -1.33 5.15 -19.72 -0.10 -1.43 16 4 C -0.18 -6.19 9.68 22.29 0.22 -5.98 16 5 C -0.09 -2.71 10.01 22.28 0.22 -2.49 16 6 C -0.16 -5.55 9.87 22.39 0.22 -5.32 16 7 C 0.09 3.93 6.77 38.87 0.26 4.20 16 8 C -0.16 -7.92 6.15 -20.04 -0.12 -8.04 16 9 C 0.00 0.24 5.63 -19.97 -0.11 0.12 16 10 C -0.45 -25.67 8.89 23.28 0.21 -25.47 16 11 H 0.08 4.54 5.04 -2.91 -0.01 4.52 16 12 C 0.04 2.12 5.51 85.17 0.47 2.59 16 13 N -0.88 -50.40 13.94 21.80 0.30 -50.09 16 14 Si 0.96 45.18 24.55 68.60 1.68 46.86 16 15 H -0.26 -11.69 6.68 99.48 0.66 -11.02 16 16 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 17 H -0.26 -12.51 6.58 99.48 0.65 -11.86 16 18 C -0.17 -8.32 8.66 84.26 0.73 -7.59 16 19 N -0.49 -20.41 3.15 -535.96 -1.69 -22.10 16 20 C 0.08 2.34 10.97 127.77 1.40 3.74 16 21 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 22 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.03 1.30 7.38 -2.38 -0.02 1.28 16 24 H 0.08 2.74 8.06 -2.39 -0.02 2.72 16 25 H 0.05 2.48 6.11 -2.39 -0.01 2.46 16 26 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 27 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 28 H 0.13 3.57 7.95 -2.91 -0.02 3.55 16 29 H 0.28 14.96 8.30 -92.71 -0.77 14.19 16 30 H 0.14 6.67 4.29 -2.91 -0.01 6.66 16 31 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.08 2.15 8.13 -2.38 -0.02 2.13 16 33 H 0.09 2.21 7.93 -2.39 -0.02 2.19 16 Total: -1.00 -66.48 267.87 5.54 -60.94 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 1.01 Total: 17.41 kcal Atomic # 6 Polarization: -57.24 SS G_CDS: 4.23 Total: -53.01 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -1.38 Total: -72.19 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.68 Total: 46.86 kcal Total: -66.48 5.54 -60.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260171173.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.881 kcal (2) G-P(sol) polarization free energy of solvation -66.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds