Wall clock time and date at job start Mon Mar 30 2020 02:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47266 * 2 1 4 4 C 1.36473 * 120.09583 * 265.02296 * 3 2 1 5 5 C 1.38894 * 120.59093 * 180.02562 * 4 3 2 6 6 C 1.38005 * 120.70085 * 359.97438 * 5 4 3 7 7 C 1.38894 * 119.88982 * 0.02562 * 6 5 4 8 8 C 1.40447 * 120.10339 * 84.99987 * 3 2 1 9 9 C 1.40937 * 133.09238 * 359.97438 * 8 3 2 10 10 C 1.39116 * 107.49862 * 179.97438 * 9 8 3 11 11 C 1.39926 * 125.69604 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00379 * 180.02562 * 11 10 9 13 13 C 1.40194 * 119.99373 * 0.03187 * 11 10 9 14 14 N 1.30748 * 120.00431 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99560 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47364 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47191 * 120.00187 * 15 13 11 18 18 H 1.48500 * 109.47152 * 239.99861 * 15 13 11 19 19 N 1.38044 * 132.79967 * 180.02562 * 7 6 5 20 20 C 1.46499 * 125.60188 * 359.94737 * 19 7 6 21 21 H 1.09000 * 109.46947 * 300.00365 * 1 2 3 22 22 H 1.08998 * 109.46762 * 59.99869 * 1 2 3 23 23 H 1.08999 * 109.47135 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46947 * 239.99635 * 2 1 3 25 25 H 1.09003 * 109.47188 * 120.00267 * 2 1 3 26 26 H 1.08003 * 119.70381 * 0.02562 * 4 3 2 27 27 H 1.08007 * 119.64927 * 180.25489 * 5 4 3 28 28 H 1.08003 * 120.05046 * 179.97438 * 6 5 4 29 29 H 1.08006 * 126.25046 * 0.02562 * 9 8 3 30 30 H 0.97000 * 120.00059 * 179.97438 * 14 13 11 31 31 H 1.09005 * 109.47466 * 89.99654 * 20 19 7 32 32 H 1.09002 * 109.47012 * 209.99785 * 20 19 7 33 33 H 1.09006 * 109.47160 * 329.99571 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3571 2.0318 -1.1763 5 6 2.8216 3.3407 -1.1882 6 6 2.9633 4.0488 -0.0122 7 6 2.6400 3.4508 1.1990 8 6 2.1674 2.1202 1.2104 9 6 1.9202 1.7754 2.5544 10 6 2.2397 2.8814 3.3355 11 6 2.1355 2.9543 4.7290 12 1 2.4094 3.8630 5.2442 13 6 1.6757 1.8475 5.4563 14 7 1.3437 0.7474 4.8325 15 14 1.5373 1.9445 7.3166 16 1 1.9715 3.2883 7.7759 17 1 0.1269 1.7146 7.7207 18 1 2.4039 0.9076 7.9323 19 7 2.6768 3.8972 2.5048 20 6 3.1078 5.2283 2.9392 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.2519 1.4927 -2.1063 27 1 3.0702 3.8109 -2.1282 28 1 3.3258 5.0659 -0.0336 29 1 1.5511 0.8257 2.9126 30 1 1.0259 -0.0185 5.3358 31 1 2.2496 5.9002 2.9573 32 1 3.5388 5.1625 3.9382 33 1 3.8556 5.6125 2.2454 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260181584.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:44 Heat of formation + Delta-G solvation = 33.724970 kcal Electronic energy + Delta-G solvation = -15586.611661 eV Core-core repulsion = 13190.669226 eV Total energy + Delta-G solvation = -2395.942436 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.78607 -36.32470 -33.87453 -32.82717 -30.97391 -28.80724 -27.88375 -25.57280 -24.71133 -22.64844 -20.50097 -20.13768 -18.43659 -16.94755 -15.73303 -15.38445 -14.46851 -14.11049 -14.09941 -13.51523 -13.30370 -12.52953 -12.33366 -12.24544 -11.92132 -11.59922 -11.49226 -11.30380 -11.09408 -10.88662 -10.74567 -10.41870 -10.15018 -10.11979 -9.76302 -9.43014 -9.31521 -8.16585 -7.05409 -6.70663 -6.29361 -4.35763 2.34361 2.82408 2.99390 3.00228 3.04698 3.78992 4.10438 4.24689 5.03790 5.36534 5.64408 5.71244 5.79933 5.95302 6.00565 6.11979 6.16111 6.21248 6.22046 6.44504 6.57832 6.67415 6.83709 6.94283 6.97346 7.01117 7.05473 7.42488 7.64102 7.67826 7.79701 7.94966 8.05453 8.36339 8.69249 8.77823 8.98523 9.17857 10.12949 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.027185 B = 0.009418 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.738752 B = 2972.169918 C = 3906.058971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 C -0.099 4.099 4 C -0.138 4.138 5 C -0.179 4.179 6 C -0.121 4.121 7 C 0.038 3.962 8 C -0.038 4.038 9 C -0.320 4.320 10 C 0.259 3.741 11 C -0.441 4.441 12 H 0.076 0.924 13 C 0.072 3.928 14 N -0.777 5.777 15 Si 0.925 3.075 16 H -0.262 1.262 17 H -0.272 1.272 18 H -0.272 1.272 19 N -0.518 5.518 20 C 0.099 3.901 21 H 0.060 0.940 22 H 0.045 0.955 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.166 0.834 30 H 0.280 0.720 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.408 1.653 -2.397 2.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 C -0.100 4.100 4 C -0.157 4.157 5 C -0.198 4.198 6 C -0.142 4.142 7 C -0.065 4.065 8 C -0.043 4.043 9 C -0.343 4.343 10 C 0.155 3.845 11 C -0.474 4.474 12 H 0.094 0.906 13 C -0.147 4.147 14 N -0.403 5.403 15 Si 0.749 3.251 16 H -0.186 1.186 17 H -0.197 1.197 18 H -0.197 1.197 19 N -0.209 5.209 20 C -0.044 4.044 21 H 0.080 0.920 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.111 0.889 29 H 0.183 0.817 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.409 1.703 -2.232 2.837 hybrid contribution 0.016 0.297 0.758 0.815 sum 0.425 2.000 -1.473 2.520 Atomic orbital electron populations 1.21683 0.95983 1.00150 1.01927 1.20248 0.95320 0.93927 1.01044 1.18898 1.03888 0.95423 0.91788 1.20080 1.04231 0.95283 0.96142 1.20175 1.08476 0.95451 0.95697 1.19686 1.05656 0.98342 0.90560 1.18209 1.08092 0.95534 0.84628 1.18327 0.99532 0.92205 0.94255 1.21749 1.22308 1.02006 0.88192 1.18198 0.91241 0.84827 0.90223 1.18715 1.39366 0.99800 0.89541 0.90598 1.25769 0.93276 0.94278 1.01411 1.69715 1.30601 1.02678 1.37265 0.85982 0.78764 0.79422 0.80888 1.18628 1.19703 1.19710 1.44142 1.60499 1.11717 1.04554 1.21458 0.98901 0.83522 1.00502 0.92048 0.93629 0.93783 0.93045 0.91463 0.88560 0.88323 0.88941 0.81717 0.90887 0.93434 0.90937 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.90 37.16 0.37 -2.14 16 2 C -0.07 -1.32 5.95 -27.88 -0.17 -1.49 16 3 C -0.10 -2.23 5.15 -104.43 -0.54 -2.76 16 4 C -0.14 -2.84 9.59 -39.98 -0.38 -3.22 16 5 C -0.18 -3.62 10.02 -39.42 -0.40 -4.01 16 6 C -0.12 -2.61 9.96 -39.42 -0.39 -3.01 16 7 C 0.04 0.93 6.81 -83.70 -0.57 0.36 16 8 C -0.04 -0.97 5.98 -106.91 -0.64 -1.61 16 9 C -0.32 -8.69 9.46 -38.23 -0.36 -9.05 16 10 C 0.26 6.92 6.65 -83.98 -0.56 6.36 16 11 C -0.44 -11.27 8.96 -38.22 -0.34 -11.61 16 12 H 0.08 1.81 7.06 -52.49 -0.37 1.44 16 13 C 0.07 1.74 5.50 -17.28 -0.10 1.65 16 14 N -0.78 -19.49 10.18 55.56 0.57 -18.93 16 15 Si 0.93 18.01 29.56 -169.99 -5.03 12.99 16 16 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 17 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 18 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 19 N -0.52 -12.53 3.24 -118.87 -0.39 -12.92 16 20 C 0.10 1.87 10.81 59.85 0.65 2.51 16 21 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.88 8.04 -51.93 -0.42 0.46 16 25 H 0.07 1.38 7.98 -51.93 -0.41 0.96 16 26 H 0.10 1.72 8.05 -52.48 -0.42 1.30 16 27 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 28 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 29 H 0.17 4.61 5.58 -52.48 -0.29 4.32 16 30 H 0.28 6.32 8.29 -40.82 -0.34 5.98 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.29 7.26 -51.93 -0.38 0.92 16 33 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 LS Contribution 278.09 15.07 4.19 4.19 Total: -1.00 -28.12 278.09 -8.47 -36.58 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.39 Total: 6.10 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: -3.43 Total: -28.02 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.18 Total: -31.84 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.12 -8.47 -36.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260181584.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.309 kcal (2) G-P(sol) polarization free energy of solvation -28.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds