Wall clock time and date at job start Mon Mar 30 2020 02:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47266 * 2 1 4 4 C 1.36473 * 120.09583 * 265.02296 * 3 2 1 5 5 C 1.38894 * 120.59093 * 180.02562 * 4 3 2 6 6 C 1.38005 * 120.70085 * 359.97438 * 5 4 3 7 7 C 1.38894 * 119.88982 * 0.02562 * 6 5 4 8 8 C 1.40447 * 120.10339 * 84.99987 * 3 2 1 9 9 C 1.40937 * 133.09238 * 359.97438 * 8 3 2 10 10 C 1.39116 * 107.49862 * 179.97438 * 9 8 3 11 11 C 1.39926 * 125.69604 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00379 * 180.02562 * 11 10 9 13 13 C 1.40194 * 119.99373 * 0.03187 * 11 10 9 14 14 N 1.30748 * 120.00431 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99560 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47364 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47191 * 120.00187 * 15 13 11 18 18 H 1.48500 * 109.47152 * 239.99861 * 15 13 11 19 19 N 1.38044 * 132.79967 * 180.02562 * 7 6 5 20 20 C 1.46499 * 125.60188 * 359.94737 * 19 7 6 21 21 H 1.09000 * 109.46947 * 300.00365 * 1 2 3 22 22 H 1.08998 * 109.46762 * 59.99869 * 1 2 3 23 23 H 1.08999 * 109.47135 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46947 * 239.99635 * 2 1 3 25 25 H 1.09003 * 109.47188 * 120.00267 * 2 1 3 26 26 H 1.08003 * 119.70381 * 0.02562 * 4 3 2 27 27 H 1.08007 * 119.64927 * 180.25489 * 5 4 3 28 28 H 1.08003 * 120.05046 * 179.97438 * 6 5 4 29 29 H 1.08006 * 126.25046 * 0.02562 * 9 8 3 30 30 H 0.97000 * 120.00059 * 179.97438 * 14 13 11 31 31 H 1.09005 * 109.47466 * 89.99654 * 20 19 7 32 32 H 1.09002 * 109.47012 * 209.99785 * 20 19 7 33 33 H 1.09006 * 109.47160 * 329.99571 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3571 2.0318 -1.1763 5 6 2.8216 3.3407 -1.1882 6 6 2.9633 4.0488 -0.0122 7 6 2.6400 3.4508 1.1990 8 6 2.1674 2.1202 1.2104 9 6 1.9202 1.7754 2.5544 10 6 2.2397 2.8814 3.3355 11 6 2.1355 2.9543 4.7290 12 1 2.4094 3.8630 5.2442 13 6 1.6757 1.8475 5.4563 14 7 1.3437 0.7474 4.8325 15 14 1.5373 1.9445 7.3166 16 1 1.9715 3.2883 7.7759 17 1 0.1269 1.7146 7.7207 18 1 2.4039 0.9076 7.9323 19 7 2.6768 3.8972 2.5048 20 6 3.1078 5.2283 2.9392 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.2519 1.4927 -2.1063 27 1 3.0702 3.8109 -2.1282 28 1 3.3258 5.0659 -0.0336 29 1 1.5511 0.8257 2.9126 30 1 1.0259 -0.0185 5.3358 31 1 2.2496 5.9002 2.9573 32 1 3.5388 5.1625 3.9382 33 1 3.8556 5.6125 2.2454 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260181584.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:44 Heat of formation + Delta-G solvation = 20.097599 kcal Electronic energy + Delta-G solvation = -15587.202588 eV Core-core repulsion = 13190.669226 eV Total energy + Delta-G solvation = -2396.533363 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.54755 -38.01895 -35.66236 -34.46214 -32.66089 -30.58530 -29.54958 -27.28847 -26.44010 -24.24821 -22.27516 -21.85387 -20.18126 -18.77562 -17.51486 -17.05383 -16.10963 -15.78260 -15.73626 -15.10944 -14.87031 -14.22552 -13.91897 -13.90065 -13.54643 -13.28791 -13.10338 -12.86268 -12.69457 -12.46770 -12.42652 -12.02209 -11.82098 -11.74972 -11.51401 -11.11223 -11.04922 -9.93127 -8.86718 -8.50463 -8.08364 -6.27678 0.62391 1.13033 1.39225 1.42657 1.55260 2.15780 2.28633 2.56285 3.26472 3.49849 4.10044 4.18338 4.27110 4.43048 4.52750 4.58434 4.64718 4.68240 4.72195 4.88383 5.02517 5.06690 5.12389 5.21817 5.31432 5.40395 5.45623 5.67391 5.86188 5.90672 6.05499 6.14592 6.27637 6.56254 6.81498 6.90217 7.14892 7.31017 8.36226 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.027185 B = 0.009418 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.738752 B = 2972.169918 C = 3906.058971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.067 4.067 3 C -0.111 4.111 4 C -0.142 4.142 5 C -0.163 4.163 6 C -0.131 4.131 7 C 0.015 3.985 8 C -0.077 4.077 9 C -0.356 4.356 10 C 0.230 3.770 11 C -0.471 4.471 12 H 0.084 0.916 13 C 0.027 3.973 14 N -0.812 5.812 15 Si 1.002 2.998 16 H -0.254 1.254 17 H -0.266 1.266 18 H -0.266 1.266 19 N -0.526 5.526 20 C 0.094 3.906 21 H 0.026 0.974 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.043 0.957 26 H 0.132 0.868 27 H 0.140 0.860 28 H 0.120 0.880 29 H 0.144 0.856 30 H 0.286 0.714 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.763 2.492 -3.729 4.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.105 4.105 3 C -0.111 4.111 4 C -0.161 4.161 5 C -0.182 4.182 6 C -0.152 4.152 7 C -0.088 4.088 8 C -0.082 4.082 9 C -0.379 4.379 10 C 0.124 3.876 11 C -0.504 4.504 12 H 0.102 0.898 13 C -0.189 4.189 14 N -0.438 5.438 15 Si 0.822 3.178 16 H -0.177 1.177 17 H -0.191 1.191 18 H -0.191 1.191 19 N -0.217 5.217 20 C -0.047 4.047 21 H 0.045 0.955 22 H 0.078 0.922 23 H 0.089 0.911 24 H 0.101 0.899 25 H 0.062 0.938 26 H 0.150 0.850 27 H 0.157 0.843 28 H 0.138 0.862 29 H 0.162 0.838 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.774 2.566 -3.588 4.478 hybrid contribution -0.070 0.037 0.944 0.948 sum 0.705 2.602 -2.644 3.776 Atomic orbital electron populations 1.21601 0.94887 1.01577 1.00856 1.20285 0.96247 0.92575 1.01353 1.19345 1.03479 0.96685 0.91630 1.20519 1.03118 0.95820 0.96659 1.20746 1.05542 0.95125 0.96822 1.20080 1.05518 0.99800 0.89801 1.18690 1.08676 0.95665 0.85757 1.18670 1.01211 0.93683 0.94605 1.21680 1.24422 1.01955 0.89843 1.18518 0.92174 0.85801 0.91072 1.19054 1.40837 1.00866 0.89630 0.89774 1.26811 0.92250 0.93454 1.06372 1.69834 1.31174 1.03503 1.39285 0.84853 0.78892 0.79739 0.74320 1.17741 1.19076 1.19054 1.44378 1.60204 1.12800 1.04295 1.21714 1.00075 0.81560 1.01400 0.95470 0.92190 0.91144 0.89891 0.93829 0.85043 0.84258 0.86195 0.83845 0.90303 0.92162 0.90517 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 9.90 71.98 0.71 -3.96 16 2 C -0.07 -2.60 5.95 29.85 0.18 -2.42 16 3 C -0.11 -4.93 5.15 -19.74 -0.10 -5.03 16 4 C -0.14 -5.42 9.59 22.01 0.21 -5.21 16 5 C -0.16 -6.00 10.02 22.37 0.22 -5.77 16 6 C -0.13 -5.35 9.96 22.37 0.22 -5.12 16 7 C 0.02 0.74 6.81 39.05 0.27 1.01 16 8 C -0.08 -4.03 5.98 -21.35 -0.13 -4.16 16 9 C -0.36 -20.54 9.46 23.14 0.22 -20.32 16 10 C 0.23 12.84 6.65 38.74 0.26 13.10 16 11 C -0.47 -25.00 8.96 23.15 0.21 -24.80 16 12 H 0.08 4.12 7.06 -2.91 -0.02 4.10 16 13 C 0.03 1.34 5.50 85.33 0.47 1.81 16 14 N -0.81 -42.92 10.18 21.87 0.22 -42.70 16 15 Si 1.00 37.48 29.56 68.60 2.03 39.51 16 16 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 17 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 18 H -0.27 -9.58 7.11 99.48 0.71 -8.88 16 19 N -0.53 -25.92 3.24 -530.00 -1.72 -27.64 16 20 C 0.09 3.48 10.81 127.77 1.38 4.86 16 21 H 0.03 1.11 8.14 -2.39 -0.02 1.10 16 22 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.08 2.64 8.04 -2.39 -0.02 2.62 16 25 H 0.04 1.86 7.98 -2.39 -0.02 1.84 16 26 H 0.13 4.07 8.05 -2.91 -0.02 4.04 16 27 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 28 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 29 H 0.14 8.72 5.58 -2.91 -0.02 8.70 16 30 H 0.29 13.56 8.29 -92.71 -0.77 12.79 16 31 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.08 2.73 7.26 -2.39 -0.02 2.71 16 33 H 0.08 2.65 8.12 -2.38 -0.02 2.63 16 Total: -1.00 -64.08 278.09 5.74 -58.33 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 1.09 Total: 28.51 kcal Atomic # 6 Polarization: -60.13 SS G_CDS: 4.12 Total: -56.01 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -1.50 Total: -70.34 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -64.08 5.74 -58.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260181584.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.432 kcal (2) G-P(sol) polarization free energy of solvation -64.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds