Wall clock time and date at job start Mon Mar 30 2020 03:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47412 * 2 1 4 4 C 1.50700 * 109.47078 * 119.99918 * 2 1 3 5 5 C 1.34319 * 125.10156 * 324.97898 * 4 2 1 6 6 C 1.46536 * 106.83841 * 179.97438 * 5 4 2 7 7 C 1.39905 * 133.88418 * 179.97438 * 6 5 4 8 8 C 1.38232 * 120.20033 * 180.02562 * 7 6 5 9 9 C 1.37966 * 120.68633 * 359.97438 * 8 7 6 10 10 C 1.40602 * 120.36273 * 0.02562 * 9 8 7 11 11 C 1.40973 * 120.29380 * 179.97438 * 10 9 8 12 12 H 1.08007 * 119.99671 * 204.70490 * 11 10 9 13 13 C 1.39944 * 120.00181 * 24.71779 * 11 10 9 14 14 N 1.30850 * 120.00471 * 17.86849 * 13 11 10 15 15 Si 1.86805 * 119.99822 * 197.87757 * 13 11 10 16 16 H 1.48490 * 109.47526 * 89.99490 * 15 13 11 17 17 H 1.48503 * 109.47127 * 209.99652 * 15 13 11 18 18 H 1.48504 * 109.47191 * 329.99183 * 15 13 11 19 19 C 1.40283 * 105.99911 * 359.97438 * 6 5 4 20 20 N 1.36720 * 125.09541 * 144.97150 * 4 2 1 21 21 H 0.97004 * 125.00090 * 0.02562 * 20 4 2 22 22 H 1.09002 * 109.47574 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47290 * 299.99939 * 1 2 3 24 24 H 1.09007 * 109.46858 * 59.99824 * 1 2 3 25 25 H 1.09001 * 109.47290 * 240.00061 * 2 1 3 26 26 H 1.09003 * 109.47371 * 179.97438 * 3 2 1 27 27 H 1.09007 * 109.47253 * 299.99934 * 3 2 1 28 28 H 1.08998 * 109.47548 * 60.00000 * 3 2 1 29 29 H 1.07997 * 126.57778 * 359.73126 * 5 4 2 30 30 H 1.07998 * 119.89842 * 0.02562 * 7 6 5 31 31 H 1.08004 * 119.66147 * 180.02562 * 8 7 6 32 32 H 1.08002 * 119.81885 * 180.02562 * 9 8 7 33 33 H 0.97002 * 120.00554 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 1.4412 -0.6783 2.4362 6 6 2.2593 -1.5003 3.3319 7 6 2.1670 -1.8477 4.6840 8 6 3.1226 -2.6645 5.2589 9 6 4.1770 -3.1482 4.5121 10 6 4.2954 -2.8157 3.1510 11 6 5.3736 -3.3103 2.3894 12 1 5.7014 -2.7783 1.5085 13 6 6.0191 -4.4908 2.7746 14 7 5.4338 -5.3156 3.6048 15 14 7.7164 -4.8889 2.1036 16 1 8.7508 -4.3223 3.0057 17 1 7.8836 -6.3623 2.0225 18 1 7.8641 -4.2988 0.7488 19 6 3.3226 -1.9803 2.5529 20 7 3.1579 -1.4843 1.2868 21 1 3.7522 -1.6573 0.5399 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 0.5387 -0.1454 2.6966 30 1 1.3467 -1.4765 5.2804 31 1 3.0426 -2.9274 6.3034 32 1 4.9155 -3.7857 4.9754 33 1 5.8814 -6.1337 3.8721 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260312240.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:35 Heat of formation + Delta-G solvation = 28.309960 kcal Electronic energy + Delta-G solvation = -15326.857029 eV Core-core repulsion = 12930.679781 eV Total energy + Delta-G solvation = -2396.177248 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.07277 -36.27795 -34.32995 -33.36005 -30.44532 -28.47177 -27.12113 -26.73855 -25.08848 -22.43012 -20.35399 -20.18369 -18.62650 -17.25180 -16.19675 -15.28599 -14.92838 -14.09255 -13.88270 -13.52686 -12.89359 -12.81227 -12.63884 -12.48239 -12.13435 -11.86939 -11.52414 -11.12069 -11.09361 -10.98520 -10.88649 -10.53667 -10.47102 -9.97520 -9.78089 -9.37001 -9.19301 -8.19190 -6.91561 -6.67470 -6.56067 -4.22576 2.53408 3.01757 3.06436 3.08030 3.27005 3.80682 3.92185 4.20236 4.71981 5.06550 5.16504 5.36110 5.70687 5.74420 5.74918 5.94786 5.98286 6.09142 6.23514 6.29621 6.40417 6.44373 6.62959 6.79991 6.84831 7.06875 7.21103 7.43092 7.55848 7.81363 7.91778 8.17871 8.29179 8.34684 8.64702 8.74218 8.88984 9.02161 10.20400 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.029087 B = 0.007920 C = 0.006552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.401436 B = 3534.722130 C = 4272.353666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.029 4.029 3 C -0.141 4.141 4 C 0.057 3.943 5 C -0.222 4.222 6 C -0.080 4.080 7 C -0.215 4.215 8 C -0.100 4.100 9 C -0.188 4.188 10 C 0.117 3.883 11 C -0.467 4.467 12 H 0.070 0.930 13 C 0.078 3.922 14 N -0.789 5.789 15 Si 0.906 3.094 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.265 1.265 19 C 0.027 3.973 20 N -0.579 5.579 21 H 0.401 0.599 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.672 6.435 -5.581 9.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.048 4.048 3 C -0.198 4.198 4 C -0.053 4.053 5 C -0.250 4.250 6 C -0.084 4.084 7 C -0.235 4.235 8 C -0.119 4.119 9 C -0.210 4.210 10 C 0.113 3.887 11 C -0.497 4.497 12 H 0.088 0.912 13 C -0.140 4.140 14 N -0.414 5.414 15 Si 0.730 3.270 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.189 1.189 19 C -0.078 4.078 20 N -0.179 5.179 21 H 0.236 0.764 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.142 0.858 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.555 6.161 -5.565 9.031 hybrid contribution 1.065 -0.463 -0.564 1.291 sum -2.490 5.699 -6.128 8.731 Atomic orbital electron populations 1.21768 0.93994 1.02178 1.01582 1.19630 0.96027 0.95154 0.93995 1.21826 1.01093 0.95259 1.01634 1.19875 0.90463 0.98916 0.96074 1.21141 1.02607 1.08884 0.92325 1.18852 0.95652 1.00285 0.93652 1.19727 1.02375 1.08201 0.93221 1.20492 0.95734 0.98150 0.97566 1.20844 1.00515 1.06944 0.92696 1.16736 0.90102 0.89915 0.91912 1.19297 1.13344 1.06661 1.10403 0.91198 1.25803 0.98750 0.95286 0.94194 1.69851 1.36224 1.08413 1.26885 0.86360 0.82480 0.77975 0.80150 1.19248 1.20306 1.18885 1.18565 0.99499 1.05807 0.83950 1.41243 1.22927 1.43457 1.10305 0.76389 0.92364 0.92068 0.92781 0.91229 0.92815 0.92748 0.92153 0.85810 0.89565 0.89428 0.86278 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.75 37.15 0.33 -1.35 16 2 C -0.03 -0.40 3.36 -91.78 -0.31 -0.71 16 3 C -0.14 -1.74 9.17 37.15 0.34 -1.40 16 4 C 0.06 1.08 6.03 -81.80 -0.49 0.58 16 5 C -0.22 -4.61 10.19 -37.62 -0.38 -4.99 16 6 C -0.08 -1.97 6.37 -105.16 -0.67 -2.64 16 7 C -0.21 -5.22 10.10 -38.96 -0.39 -5.61 16 8 C -0.10 -2.49 10.00 -39.68 -0.40 -2.89 16 9 C -0.19 -5.08 8.68 -38.79 -0.34 -5.42 16 10 C 0.12 3.19 5.58 -106.73 -0.60 2.59 16 11 C -0.47 -12.37 9.04 -37.91 -0.34 -12.71 16 12 H 0.07 1.76 7.91 -52.48 -0.42 1.34 16 13 C 0.08 1.96 5.13 -17.33 -0.09 1.87 16 14 N -0.79 -20.61 10.97 55.55 0.61 -20.00 16 15 Si 0.91 18.71 29.60 -169.99 -5.03 13.68 16 16 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 19 C 0.03 0.69 7.00 -83.56 -0.58 0.10 16 20 N -0.58 -12.33 6.03 -6.64 -0.04 -12.37 16 21 H 0.40 7.69 8.96 -40.82 -0.37 7.32 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.74 7.19 -51.93 -0.37 0.37 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.12 2.26 7.28 -52.49 -0.38 1.88 16 30 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 32 H 0.12 3.28 6.15 -52.49 -0.32 2.96 16 33 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 LS Contribution 278.08 15.07 4.19 4.19 Total: -1.00 -28.99 278.08 -8.58 -37.57 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -4.38 Total: 9.53 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: -3.93 Total: -32.59 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.57 Total: -32.37 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.99 -8.58 -37.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312240.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.876 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds