Wall clock time and date at job start Mon Mar 30 2020 03:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47412 * 2 1 4 4 C 1.50700 * 109.47078 * 119.99918 * 2 1 3 5 5 C 1.34319 * 125.10156 * 324.97898 * 4 2 1 6 6 C 1.46536 * 106.83841 * 179.97438 * 5 4 2 7 7 C 1.39905 * 133.88418 * 179.97438 * 6 5 4 8 8 C 1.38232 * 120.20033 * 180.02562 * 7 6 5 9 9 C 1.37966 * 120.68633 * 359.97438 * 8 7 6 10 10 C 1.40602 * 120.36273 * 0.02562 * 9 8 7 11 11 C 1.40973 * 120.29380 * 179.97438 * 10 9 8 12 12 H 1.08007 * 119.99671 * 204.70490 * 11 10 9 13 13 C 1.39944 * 120.00181 * 24.71779 * 11 10 9 14 14 N 1.30850 * 120.00471 * 17.86849 * 13 11 10 15 15 Si 1.86805 * 119.99822 * 197.87757 * 13 11 10 16 16 H 1.48490 * 109.47526 * 89.99490 * 15 13 11 17 17 H 1.48503 * 109.47127 * 209.99652 * 15 13 11 18 18 H 1.48504 * 109.47191 * 329.99183 * 15 13 11 19 19 C 1.40283 * 105.99911 * 359.97438 * 6 5 4 20 20 N 1.36720 * 125.09541 * 144.97150 * 4 2 1 21 21 H 0.97004 * 125.00090 * 0.02562 * 20 4 2 22 22 H 1.09002 * 109.47574 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47290 * 299.99939 * 1 2 3 24 24 H 1.09007 * 109.46858 * 59.99824 * 1 2 3 25 25 H 1.09001 * 109.47290 * 240.00061 * 2 1 3 26 26 H 1.09003 * 109.47371 * 179.97438 * 3 2 1 27 27 H 1.09007 * 109.47253 * 299.99934 * 3 2 1 28 28 H 1.08998 * 109.47548 * 60.00000 * 3 2 1 29 29 H 1.07997 * 126.57778 * 359.73126 * 5 4 2 30 30 H 1.07998 * 119.89842 * 0.02562 * 7 6 5 31 31 H 1.08004 * 119.66147 * 180.02562 * 8 7 6 32 32 H 1.08002 * 119.81885 * 180.02562 * 9 8 7 33 33 H 0.97002 * 120.00554 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 1.4412 -0.6783 2.4362 6 6 2.2593 -1.5003 3.3319 7 6 2.1670 -1.8477 4.6840 8 6 3.1226 -2.6645 5.2589 9 6 4.1770 -3.1482 4.5121 10 6 4.2954 -2.8157 3.1510 11 6 5.3736 -3.3103 2.3894 12 1 5.7014 -2.7783 1.5085 13 6 6.0191 -4.4908 2.7746 14 7 5.4338 -5.3156 3.6048 15 14 7.7164 -4.8889 2.1036 16 1 8.7508 -4.3223 3.0057 17 1 7.8836 -6.3623 2.0225 18 1 7.8641 -4.2988 0.7488 19 6 3.3226 -1.9803 2.5529 20 7 3.1579 -1.4843 1.2868 21 1 3.7522 -1.6573 0.5399 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 0.5387 -0.1454 2.6966 30 1 1.3467 -1.4765 5.2804 31 1 3.0426 -2.9274 6.3034 32 1 4.9155 -3.7857 4.9754 33 1 5.8814 -6.1337 3.8721 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260312240.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:35 Heat of formation + Delta-G solvation = 12.948366 kcal Electronic energy + Delta-G solvation = -15327.523158 eV Core-core repulsion = 12930.679781 eV Total energy + Delta-G solvation = -2396.843377 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.78171 -37.96844 -35.79107 -35.15906 -32.28715 -30.29943 -28.64387 -27.86783 -27.02808 -23.86587 -22.13851 -22.03334 -20.12979 -19.07872 -18.02108 -16.92809 -16.60126 -15.60155 -15.35925 -14.97709 -14.62975 -14.47177 -14.26958 -13.82044 -13.60592 -13.29444 -12.96720 -12.87413 -12.71212 -12.23603 -12.15743 -12.06825 -11.78672 -11.73784 -11.55193 -11.25951 -11.08265 -10.01821 -8.81629 -8.55607 -8.35499 -6.22041 0.73921 1.29909 1.35261 1.43569 1.48552 2.08502 2.18661 2.60139 2.81531 3.77012 3.82868 4.08750 4.31129 4.41492 4.60697 4.67444 4.73292 4.87899 4.92225 4.97354 5.00013 5.06685 5.17446 5.24502 5.31777 5.43243 5.46789 5.60006 5.65475 5.93820 6.08374 6.27032 6.37410 6.46596 6.76385 6.85760 7.06151 7.11162 8.33940 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.029087 B = 0.007920 C = 0.006552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.401436 B = 3534.722130 C = 4272.353666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.028 4.028 3 C -0.137 4.137 4 C 0.079 3.921 5 C -0.241 4.241 6 C -0.104 4.104 7 C -0.221 4.221 8 C -0.111 4.111 9 C -0.219 4.219 10 C 0.089 3.911 11 C -0.497 4.497 12 H 0.073 0.927 13 C 0.035 3.965 14 N -0.823 5.823 15 Si 0.982 3.018 16 H -0.264 1.264 17 H -0.268 1.268 18 H -0.257 1.257 19 C -0.002 4.002 20 N -0.579 5.579 21 H 0.409 0.591 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.150 0.850 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.192 7.656 -7.434 11.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.048 4.048 3 C -0.194 4.194 4 C -0.031 4.031 5 C -0.267 4.267 6 C -0.109 4.109 7 C -0.241 4.241 8 C -0.130 4.130 9 C -0.240 4.240 10 C 0.085 3.915 11 C -0.527 4.527 12 H 0.091 0.909 13 C -0.180 4.180 14 N -0.448 5.448 15 Si 0.803 3.197 16 H -0.188 1.188 17 H -0.193 1.193 18 H -0.181 1.181 19 C -0.108 4.108 20 N -0.180 5.180 21 H 0.245 0.755 22 H 0.067 0.933 23 H 0.080 0.920 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.075 0.925 29 H 0.167 0.833 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.094 7.394 -7.421 11.248 hybrid contribution 1.115 -0.775 -0.020 1.358 sum -2.979 6.620 -7.441 10.395 Atomic orbital electron populations 1.21772 0.92179 1.02094 1.03217 1.19868 0.97410 0.95692 0.91805 1.21803 1.00486 0.94037 1.03091 1.20738 0.88339 0.96472 0.97577 1.21421 1.03660 1.09404 0.92165 1.19411 0.96367 1.00877 0.94228 1.20071 1.02653 1.07646 0.93733 1.20729 0.95428 0.98254 0.98576 1.20841 1.01508 1.08317 0.93364 1.17089 0.91135 0.90844 0.92395 1.19555 1.14368 1.07677 1.11074 0.90874 1.26712 1.02452 0.94583 0.94240 1.69920 1.37986 1.08992 1.27943 0.85209 0.76842 0.78095 0.79574 1.18849 1.19267 1.18083 1.18698 0.99745 1.06538 0.85852 1.41351 1.23836 1.43445 1.09370 0.75476 0.93333 0.91975 0.89692 0.89874 0.93808 0.89543 0.92506 0.83268 0.87203 0.87347 0.87960 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.75 71.98 0.63 -2.16 16 2 C -0.03 -0.71 3.36 -11.54 -0.04 -0.74 16 3 C -0.14 -2.90 9.17 71.98 0.66 -2.24 16 4 C 0.08 2.86 6.03 40.90 0.25 3.11 16 5 C -0.24 -9.64 10.19 23.54 0.24 -9.40 16 6 C -0.10 -5.14 6.37 -20.21 -0.13 -5.27 16 7 C -0.22 -10.80 10.10 22.67 0.23 -10.57 16 8 C -0.11 -5.65 10.00 22.20 0.22 -5.43 16 9 C -0.22 -12.34 8.68 22.78 0.20 -12.14 16 10 C 0.09 5.04 5.58 -21.23 -0.12 4.92 16 11 C -0.50 -27.14 9.04 23.35 0.21 -26.93 16 12 H 0.07 3.77 7.91 -2.91 -0.02 3.75 16 13 C 0.04 1.80 5.13 85.25 0.44 2.24 16 14 N -0.82 -44.33 10.97 21.83 0.24 -44.09 16 15 Si 0.98 38.64 29.60 68.60 2.03 40.67 16 16 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 17 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 18 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 19 C 0.00 -0.12 7.00 39.64 0.28 0.15 16 20 N -0.58 -24.51 6.03 -174.91 -1.05 -25.56 16 21 H 0.41 15.57 8.96 -92.71 -0.83 14.74 16 22 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.06 1.28 7.19 -2.39 -0.02 1.26 16 24 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 27 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.15 5.09 7.28 -2.91 -0.02 5.07 16 30 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 31 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 32 H 0.10 5.97 6.15 -2.91 -0.02 5.95 16 33 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 Total: -1.00 -64.55 278.08 4.56 -59.99 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: 0.28 Total: 33.47 kcal Atomic # 6 Polarization: -67.54 SS G_CDS: 3.07 Total: -64.48 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -0.81 Total: -69.65 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -64.55 4.56 -59.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312240.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.940 kcal (2) G-P(sol) polarization free energy of solvation -64.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds