Wall clock time and date at job start Mon Mar 30 2020 02:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.36664 * 120.11701 * 265.00218 * 3 2 1 5 5 C 1.38784 * 120.52706 * 180.02562 * 4 3 2 6 6 C 1.37784 * 120.66870 * 359.97438 * 5 4 3 7 7 C 1.39088 * 119.77749 * 359.97438 * 6 5 4 8 8 N 1.37692 * 133.51326 * 179.97438 * 7 6 5 9 9 H 0.97007 * 125.06564 * 0.02562 * 8 7 6 10 10 C 1.36841 * 109.87222 * 179.35359 * 8 7 6 11 11 C 1.34236 * 109.93254 * 0.65074 * 10 8 7 12 12 C 1.50704 * 126.49812 * 179.49291 * 11 10 8 13 13 C 1.50694 * 109.47436 * 264.97444 * 12 11 10 14 14 H 1.08005 * 119.99812 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00196 * 179.97438 * 13 12 11 16 16 N 1.31507 * 119.99876 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99894 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47214 * 89.99950 * 17 15 13 19 19 H 1.48498 * 109.47154 * 210.00013 * 17 15 13 20 20 H 1.48505 * 109.47346 * 330.00147 * 17 15 13 21 21 C 1.39586 * 120.11648 * 84.72599 * 3 2 1 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 27 27 H 1.08001 * 119.73607 * 359.97438 * 4 3 2 28 28 H 1.08007 * 119.66364 * 179.97438 * 5 4 3 29 29 H 1.08000 * 120.11190 * 179.97438 * 6 5 4 30 30 H 1.07994 * 125.03343 * 180.11855 * 10 8 7 31 31 H 1.09006 * 109.46848 * 24.97179 * 12 11 10 32 32 H 1.08999 * 109.47280 * 144.96815 * 12 11 10 33 33 H 0.97002 * 119.99661 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3579 2.0331 -1.1777 5 6 2.8218 3.3410 -1.1875 6 6 2.9620 4.0459 -0.0119 7 6 2.6354 3.4429 1.1982 8 7 2.6644 3.8680 2.5075 9 1 2.9487 4.7475 2.8017 10 6 2.2183 2.8700 3.3306 11 6 1.9055 1.7844 2.6055 12 6 1.3889 0.4713 3.1348 13 6 2.5407 -0.4814 3.3259 14 1 3.5463 -0.1676 3.0875 15 6 2.3108 -1.7536 3.8051 16 7 1.0865 -2.1355 4.0958 17 14 3.7386 -2.9348 4.0413 18 1 4.2836 -2.7843 5.4145 19 1 3.2652 -4.3288 3.8466 20 1 4.8021 -2.6303 3.0505 21 6 2.1611 2.1182 1.2023 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.2543 1.4944 -2.1080 28 1 3.0755 3.8112 -2.1262 29 1 3.3242 5.0632 -0.0300 30 1 2.1384 2.9418 4.4051 31 1 0.8908 0.6355 4.0904 32 1 0.6801 0.0466 2.4239 33 1 0.9247 -3.0307 4.4326 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260362670.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:00 Heat of formation + Delta-G solvation = 35.940340 kcal Electronic energy + Delta-G solvation = -15615.118891 eV Core-core repulsion = 13219.272521 eV Total energy + Delta-G solvation = -2395.846370 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.61875 -36.70382 -34.16802 -32.67142 -30.73250 -28.71219 -28.62861 -26.40022 -23.24989 -22.79147 -21.27673 -20.90472 -18.21385 -16.77909 -16.18871 -15.61933 -14.91366 -14.44946 -14.11717 -13.88441 -13.34150 -12.79883 -12.32970 -12.16957 -12.12042 -11.78569 -11.45877 -11.20322 -10.96791 -10.74912 -10.63946 -10.42033 -10.16744 -9.74776 -9.59848 -9.38504 -8.56211 -8.33138 -7.59972 -6.80214 -5.94990 -3.98061 1.72605 2.20741 3.33786 3.40258 3.43583 3.56608 3.75947 4.45102 4.55215 5.25520 5.36828 5.42385 5.54336 5.72335 5.81352 5.90479 6.11305 6.16298 6.19820 6.29927 6.45719 6.58916 6.66083 6.81613 6.89767 6.98394 7.06964 7.35864 7.40101 7.58387 7.64212 7.81814 7.99751 8.01723 8.21065 8.47225 9.07515 9.64617 11.12873 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.026892 B = 0.008948 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.942675 B = 3128.334540 C = 3530.430847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 C -0.007 4.007 4 C -0.171 4.171 5 C -0.102 4.102 6 C -0.152 4.152 7 C 0.094 3.906 8 N -0.604 5.604 9 H 0.405 0.595 10 C 0.002 3.998 11 C -0.104 4.104 12 C 0.072 3.928 13 C -0.502 4.502 14 H 0.054 0.946 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.887 3.113 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.100 4.100 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.040 0.960 25 H 0.111 0.889 26 H 0.056 0.944 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.161 0.839 31 H 0.022 0.978 32 H 0.041 0.959 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.251 9.454 -6.777 11.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.138 4.138 3 C -0.007 4.007 4 C -0.190 4.190 5 C -0.121 4.121 6 C -0.173 4.173 7 C -0.014 4.014 8 N -0.208 5.208 9 H 0.240 0.760 10 C -0.120 4.120 11 C -0.110 4.110 12 C 0.035 3.965 13 C -0.541 4.541 14 H 0.072 0.928 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.715 3.285 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.105 4.105 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.059 0.941 25 H 0.129 0.871 26 H 0.075 0.925 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.179 0.821 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.174 9.381 -6.608 11.534 hybrid contribution 1.038 -0.157 0.374 1.115 sum 2.212 9.223 -6.234 11.350 Atomic orbital electron populations 1.21658 0.95186 1.01325 1.01144 1.20778 0.96019 0.92723 1.04276 1.19193 0.94963 0.95592 0.90996 1.20405 1.05930 0.95543 0.97131 1.20595 1.00411 0.94643 0.96427 1.19804 1.07917 0.99581 0.90002 1.18278 1.02941 0.95014 0.85165 1.41623 1.59887 1.14791 1.04499 0.75965 1.21548 1.06065 0.88637 0.95760 1.21233 1.02963 0.96946 0.89852 1.17906 0.96198 0.86374 0.96008 1.21090 0.93555 0.96827 1.42610 0.92780 1.24970 0.95419 0.98103 0.95737 1.69949 1.19246 1.19151 1.44988 0.86662 0.82904 0.80409 0.78497 1.20811 1.21250 1.19866 1.19124 1.04739 0.92848 0.93797 0.92737 0.92047 0.94080 0.87087 0.92497 0.86910 0.86769 0.87367 0.82125 0.95992 0.94140 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.32 37.16 0.35 -2.11 16 2 C -0.10 -1.97 5.43 -27.88 -0.15 -2.12 16 3 C -0.01 -0.14 5.13 -104.69 -0.54 -0.67 16 4 C -0.17 -2.87 9.60 -39.95 -0.38 -3.26 16 5 C -0.10 -1.55 10.01 -39.55 -0.40 -1.95 16 6 C -0.15 -2.41 10.08 -39.43 -0.40 -2.81 16 7 C 0.09 1.73 7.28 -83.99 -0.61 1.12 16 8 N -0.60 -9.92 6.07 -10.65 -0.06 -9.99 16 9 H 0.41 5.00 8.96 -40.82 -0.37 4.64 16 10 C 0.00 0.04 11.73 -16.73 -0.20 -0.16 16 11 C -0.10 -2.31 5.50 -102.71 -0.57 -2.87 16 12 C 0.07 1.84 4.61 -29.04 -0.13 1.70 16 13 C -0.50 -13.83 7.92 -34.44 -0.27 -14.10 16 14 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 17 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.10 -2.10 6.15 -105.14 -0.65 -2.74 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.06 1.21 6.78 -51.93 -0.35 0.86 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.11 2.57 5.38 -51.93 -0.28 2.29 16 26 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 27 H 0.11 1.64 8.05 -52.49 -0.42 1.22 16 28 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.16 2.66 8.06 -52.49 -0.42 2.24 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.04 1.06 4.84 -51.93 -0.25 0.81 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 275.13 15.07 4.15 4.15 Total: -1.00 -30.18 275.13 -8.41 -38.59 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -4.17 Total: 4.35 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -4.04 Total: -28.43 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.67 Total: -35.13 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.18 -8.41 -38.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260362670.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.534 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds