Wall clock time and date at job start Mon Mar 30 2020 02:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.36664 * 120.11701 * 265.00218 * 3 2 1 5 5 C 1.38784 * 120.52706 * 180.02562 * 4 3 2 6 6 C 1.37784 * 120.66870 * 359.97438 * 5 4 3 7 7 C 1.39088 * 119.77749 * 359.97438 * 6 5 4 8 8 N 1.37692 * 133.51326 * 179.97438 * 7 6 5 9 9 H 0.97007 * 125.06564 * 0.02562 * 8 7 6 10 10 C 1.36841 * 109.87222 * 179.35359 * 8 7 6 11 11 C 1.34236 * 109.93254 * 0.65074 * 10 8 7 12 12 C 1.50704 * 126.49812 * 179.49291 * 11 10 8 13 13 C 1.50694 * 109.47436 * 264.97444 * 12 11 10 14 14 H 1.08005 * 119.99812 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00196 * 179.97438 * 13 12 11 16 16 N 1.31507 * 119.99876 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99894 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47214 * 89.99950 * 17 15 13 19 19 H 1.48498 * 109.47154 * 210.00013 * 17 15 13 20 20 H 1.48505 * 109.47346 * 330.00147 * 17 15 13 21 21 C 1.39586 * 120.11648 * 84.72599 * 3 2 1 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 27 27 H 1.08001 * 119.73607 * 359.97438 * 4 3 2 28 28 H 1.08007 * 119.66364 * 179.97438 * 5 4 3 29 29 H 1.08000 * 120.11190 * 179.97438 * 6 5 4 30 30 H 1.07994 * 125.03343 * 180.11855 * 10 8 7 31 31 H 1.09006 * 109.46848 * 24.97179 * 12 11 10 32 32 H 1.08999 * 109.47280 * 144.96815 * 12 11 10 33 33 H 0.97002 * 119.99661 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3579 2.0331 -1.1777 5 6 2.8218 3.3410 -1.1875 6 6 2.9620 4.0459 -0.0119 7 6 2.6354 3.4429 1.1982 8 7 2.6644 3.8680 2.5075 9 1 2.9487 4.7475 2.8017 10 6 2.2183 2.8700 3.3306 11 6 1.9055 1.7844 2.6055 12 6 1.3889 0.4713 3.1348 13 6 2.5407 -0.4814 3.3259 14 1 3.5463 -0.1676 3.0875 15 6 2.3108 -1.7536 3.8051 16 7 1.0865 -2.1355 4.0958 17 14 3.7386 -2.9348 4.0413 18 1 4.2836 -2.7843 5.4145 19 1 3.2652 -4.3288 3.8466 20 1 4.8021 -2.6303 3.0505 21 6 2.1611 2.1182 1.2023 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.2543 1.4944 -2.1080 28 1 3.0755 3.8112 -2.1262 29 1 3.3242 5.0632 -0.0300 30 1 2.1384 2.9418 4.4051 31 1 0.8908 0.6355 4.0904 32 1 0.6801 0.0466 2.4239 33 1 0.9247 -3.0307 4.4326 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260362670.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:59 Heat of formation + Delta-G solvation = 19.229413 kcal Electronic energy + Delta-G solvation = -15615.843531 eV Core-core repulsion = 13219.272521 eV Total energy + Delta-G solvation = -2396.571010 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.01828 -38.05788 -35.88021 -34.47456 -32.42481 -30.22754 -30.01789 -28.15561 -24.93208 -24.51724 -22.61627 -22.33806 -19.77324 -18.37321 -18.13099 -17.00309 -16.45412 -16.20953 -15.55981 -15.32904 -14.74883 -14.30999 -14.24289 -13.87598 -13.55839 -13.46341 -13.02543 -12.77135 -12.63126 -12.53534 -12.12083 -12.05675 -11.76171 -11.53253 -11.44898 -11.18842 -10.48660 -10.07701 -8.96225 -8.35361 -8.00263 -6.19336 0.37667 0.87159 1.39817 1.40699 1.51589 2.01828 2.44441 2.47647 3.11865 3.20028 3.93257 4.17620 4.19236 4.39840 4.49299 4.55200 4.66544 4.69329 4.83093 4.89571 5.04172 5.13258 5.26021 5.29121 5.37660 5.45546 5.57314 5.68325 5.80081 5.86011 5.94947 6.07977 6.18070 6.37123 6.46969 6.90437 6.96827 7.46672 8.98380 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.026892 B = 0.008948 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.942675 B = 3128.334540 C = 3530.430847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 C -0.040 4.040 4 C -0.165 4.165 5 C -0.097 4.097 6 C -0.145 4.145 7 C 0.081 3.919 8 N -0.586 5.586 9 H 0.427 0.573 10 C 0.020 3.980 11 C -0.157 4.157 12 C 0.087 3.913 13 C -0.508 4.508 14 H 0.041 0.959 15 C 0.010 3.990 16 N -0.927 5.927 17 Si 0.950 3.050 18 H -0.274 1.274 19 H -0.280 1.280 20 H -0.272 1.272 21 C -0.134 4.134 22 H 0.053 0.947 23 H 0.034 0.966 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.137 0.863 28 H 0.157 0.843 29 H 0.146 0.854 30 H 0.180 0.820 31 H -0.006 1.006 32 H 0.022 0.978 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.731 11.284 -8.500 14.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.134 4.134 3 C -0.041 4.041 4 C -0.184 4.184 5 C -0.116 4.116 6 C -0.166 4.166 7 C -0.027 4.027 8 N -0.192 5.192 9 H 0.266 0.734 10 C -0.104 4.104 11 C -0.164 4.164 12 C 0.049 3.951 13 C -0.546 4.546 14 H 0.060 0.940 15 C -0.188 4.188 16 N -0.567 5.567 17 Si 0.776 3.224 18 H -0.200 1.200 19 H -0.206 1.206 20 H -0.196 1.196 21 C -0.139 4.139 22 H 0.072 0.928 23 H 0.053 0.947 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.155 0.845 28 H 0.174 0.826 29 H 0.164 0.836 30 H 0.197 0.803 31 H 0.012 0.988 32 H 0.040 0.960 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.669 11.251 -8.335 14.255 hybrid contribution 0.573 -0.638 0.844 1.203 sum 3.242 10.614 -7.491 13.390 Atomic orbital electron populations 1.21572 0.94654 1.01228 1.01007 1.20643 0.96581 0.93322 1.02842 1.19334 0.97198 0.95602 0.91957 1.20750 1.04342 0.96482 0.96851 1.21101 0.98611 0.93814 0.98041 1.20281 1.06296 1.01136 0.88860 1.18600 1.03249 0.94299 0.86522 1.41503 1.58779 1.15162 1.03708 0.73352 1.21721 1.03827 0.88268 0.96610 1.21000 1.06778 0.96760 0.91865 1.17553 0.95114 0.88297 0.94118 1.21268 0.93524 0.97657 1.42144 0.94039 1.25731 0.97857 0.99698 0.95521 1.70063 1.21101 1.19635 1.45922 0.85672 0.79806 0.78356 0.78589 1.19964 1.20558 1.19637 1.19349 1.06325 0.94698 0.93481 0.92806 0.94706 0.91444 0.91657 0.90545 0.84535 0.82569 0.83643 0.80268 0.98792 0.95968 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 9.32 71.98 0.67 -4.09 16 2 C -0.10 -3.88 5.43 29.85 0.16 -3.72 16 3 C -0.04 -1.57 5.13 -19.91 -0.10 -1.67 16 4 C -0.17 -5.10 9.60 22.03 0.21 -4.89 16 5 C -0.10 -2.52 10.01 22.29 0.22 -2.30 16 6 C -0.15 -4.00 10.08 22.37 0.23 -3.77 16 7 C 0.08 2.83 7.28 39.03 0.28 3.11 16 8 N -0.59 -18.13 6.07 -187.60 -1.14 -19.27 16 9 H 0.43 9.26 8.96 -92.70 -0.83 8.42 16 10 C 0.02 0.76 11.73 83.00 0.97 1.73 16 11 C -0.16 -7.27 5.50 -18.63 -0.10 -7.37 16 12 C 0.09 4.69 4.61 29.10 0.13 4.82 16 13 C -0.51 -29.28 7.92 25.60 0.20 -29.07 16 14 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 15 C 0.01 0.56 5.46 84.66 0.46 1.02 16 16 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 17 Si 0.95 45.08 29.54 68.60 2.03 47.10 16 18 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 21 C -0.13 -5.65 6.15 -20.20 -0.12 -5.77 16 22 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.03 1.45 6.78 -2.39 -0.02 1.43 16 24 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.06 3.22 5.38 -2.39 -0.01 3.20 16 26 H 0.08 2.64 8.05 -2.39 -0.02 2.62 16 27 H 0.14 3.47 8.05 -2.91 -0.02 3.45 16 28 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 29 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 30 H 0.18 5.88 8.06 -2.91 -0.02 5.86 16 31 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 32 H 0.02 1.26 4.84 -2.39 -0.01 1.25 16 33 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -68.25 275.13 4.68 -63.57 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.29 Total: 15.99 kcal Atomic # 6 Polarization: -55.17 SS G_CDS: 3.22 Total: -51.95 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -0.85 Total: -74.71 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -68.25 4.68 -63.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260362670.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.797 kcal (2) G-P(sol) polarization free energy of solvation -68.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds