Wall clock time and date at job start Mon Mar 30 2020 02:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.46894 * 2 1 4 4 C 1.38836 * 119.73739 * 270.02158 * 3 2 1 5 5 C 1.37747 * 120.66798 * 179.97438 * 4 3 2 6 6 C 1.39126 * 119.77857 * 359.97391 * 5 4 3 7 7 N 1.37692 * 133.50671 * 180.02562 * 6 5 4 8 8 H 0.96995 * 125.06396 * 359.97438 * 7 6 5 9 9 C 1.36824 * 109.87093 * 179.97438 * 7 6 5 10 10 C 1.50700 * 125.03419 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.46869 * 95.02541 * 10 9 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.34240 * 109.93409 * 0.26283 * 9 7 6 20 20 C 1.40671 * 119.33229 * 0.02562 * 6 5 4 21 21 C 1.36627 * 119.73705 * 90.00082 * 3 2 1 22 22 H 1.08995 * 109.46895 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47257 * 299.99938 * 1 2 3 24 24 H 1.09002 * 109.47420 * 60.00031 * 1 2 3 25 25 H 1.08998 * 109.47257 * 240.00062 * 2 1 3 26 26 H 1.09002 * 109.47420 * 119.99968 * 2 1 3 27 27 H 1.08007 * 119.66448 * 359.97438 * 4 3 2 28 28 H 1.08004 * 120.10908 * 179.97438 * 5 4 3 29 29 H 1.09004 * 109.47210 * 335.02834 * 10 9 7 30 30 H 1.08994 * 109.47551 * 215.02487 * 10 9 7 31 31 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 32 32 H 1.07997 * 126.50246 * 179.70784 * 19 9 7 33 33 H 1.08000 * 120.11475 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2614 2.0703 -1.2055 5 6 2.7199 3.3690 -1.2279 6 6 2.9561 4.0391 -0.0317 7 7 3.4026 5.3054 0.2733 8 1 3.6422 5.9835 -0.3775 9 6 3.4580 5.4645 1.6311 10 6 3.9010 6.7197 2.3377 11 6 2.6945 7.5545 2.6823 12 1 1.7059 7.2103 2.4167 13 6 2.8524 8.7547 3.3424 14 7 4.0563 9.1736 3.6662 15 14 1.3565 9.7857 3.7763 16 1 0.4571 9.0045 4.6630 17 1 1.7926 11.0204 4.4769 18 1 0.6305 10.1524 2.5339 19 6 3.0653 4.3348 2.2407 20 6 2.7224 3.3766 1.1870 21 6 2.2581 2.0598 1.1863 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.0782 1.5519 -2.1352 28 1 2.8955 3.8654 -2.1709 29 1 4.5628 7.2896 1.6854 30 1 4.4321 6.4541 3.2517 31 1 4.1674 10.0182 4.1302 32 1 3.0111 4.1650 3.3059 33 1 2.0778 1.5482 2.1203 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260629453.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:18 Heat of formation + Delta-G solvation = 27.964345 kcal Electronic energy + Delta-G solvation = -14791.139330 eV Core-core repulsion = 12394.947095 eV Total energy + Delta-G solvation = -2396.192235 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.65119 -37.32413 -33.59260 -32.72642 -31.29699 -29.88084 -28.13981 -26.69225 -23.75678 -23.02893 -21.29510 -20.19062 -19.34625 -17.15482 -16.40853 -15.41955 -15.01494 -14.53629 -14.03470 -13.79615 -13.45907 -13.21800 -12.97445 -12.42188 -12.32368 -12.16114 -11.87239 -11.42100 -11.02576 -10.92814 -10.82623 -10.68876 -10.56874 -10.35107 -9.83298 -9.54355 -9.11171 -8.52739 -7.47923 -7.02132 -6.13749 -4.19403 1.63530 2.04755 3.27581 3.31640 3.33943 3.53798 3.80613 4.31545 4.38603 4.99639 5.02897 5.20824 5.28860 5.42223 5.48423 5.62154 5.75474 5.82051 5.92308 5.96028 6.05083 6.25623 6.30545 6.44324 6.52416 6.65221 6.88957 7.03028 7.09732 7.31478 7.38047 7.62728 7.80832 7.92388 8.09305 8.29317 8.84919 9.45550 10.95138 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.042239 B = 0.005331 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.739748 B = 5251.385592 C = 5477.079459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 C -0.120 4.120 4 C -0.115 4.115 5 C -0.126 4.126 6 C 0.080 3.920 7 N -0.593 5.593 8 H 0.411 0.589 9 C 0.144 3.856 10 C 0.068 3.932 11 C -0.518 4.518 12 H 0.059 0.941 13 C 0.061 3.939 14 N -0.893 5.893 15 Si 0.899 3.101 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.277 1.277 19 C -0.240 4.240 20 C -0.093 4.093 21 C -0.077 4.077 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.029 0.971 30 H 0.048 0.952 31 H 0.264 0.736 32 H 0.139 0.861 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.145 -13.291 -7.667 15.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.121 4.121 4 C -0.134 4.134 5 C -0.147 4.147 6 C -0.027 4.027 7 N -0.195 5.195 8 H 0.247 0.753 9 C 0.036 3.964 10 C 0.030 3.970 11 C -0.556 4.556 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.532 5.532 15 Si 0.727 3.273 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.202 1.202 19 C -0.263 4.263 20 C -0.098 4.098 21 C -0.096 4.096 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.133 0.867 28 H 0.130 0.870 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.157 0.843 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.007 -13.034 -7.623 15.396 hybrid contribution -0.677 1.059 -0.063 1.258 sum -3.684 -11.975 -7.686 14.699 Atomic orbital electron populations 1.21760 0.95404 1.00959 1.02240 1.20401 0.95670 0.93164 1.02008 1.19181 1.03793 0.96214 0.92954 1.20449 1.01959 0.93952 0.97017 1.19915 1.05051 0.95110 0.94622 1.18283 1.02833 0.86362 0.95214 1.41979 1.58523 1.11686 1.07347 0.75287 1.21474 0.96080 0.97767 0.81114 1.18123 0.97202 0.86538 0.95094 1.20989 0.92578 1.03934 1.38114 0.92261 1.24997 0.96149 0.97556 0.95444 1.69939 1.21276 1.21734 1.40203 0.86532 0.82672 0.79401 0.78728 1.19977 1.21133 1.20205 1.21320 1.14422 0.92853 0.97743 1.19310 1.03318 0.94272 0.92920 1.20031 0.99517 0.92842 0.97169 0.93024 0.92567 0.92757 0.91736 0.91619 0.86714 0.86965 0.95316 0.93370 0.92588 0.84274 0.86802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.89 37.16 0.37 -1.13 16 2 C -0.08 -0.83 6.04 -27.88 -0.17 -1.00 16 3 C -0.12 -1.73 5.10 -104.98 -0.54 -2.26 16 4 C -0.11 -1.63 9.66 -39.54 -0.38 -2.01 16 5 C -0.13 -1.97 10.08 -39.43 -0.40 -2.37 16 6 C 0.08 1.49 7.28 -83.98 -0.61 0.88 16 7 N -0.59 -11.42 6.07 -6.95 -0.04 -11.47 16 8 H 0.41 6.91 8.96 -40.82 -0.37 6.54 16 9 C 0.14 3.17 6.27 -81.77 -0.51 2.66 16 10 C 0.07 1.70 5.48 -29.03 -0.16 1.54 16 11 C -0.52 -14.19 9.09 -34.44 -0.31 -14.50 16 12 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 15 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 C -0.24 -5.07 10.95 -37.67 -0.41 -5.48 16 20 C -0.09 -1.80 6.37 -105.14 -0.67 -2.47 16 21 C -0.08 -1.27 9.67 -39.65 -0.38 -1.65 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 26 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 27 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 28 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.14 2.80 8.06 -52.49 -0.42 2.38 16 33 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 285.68 15.07 4.31 4.31 Total: -1.00 -29.38 285.68 -8.85 -38.23 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -4.55 Total: 3.87 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -4.28 Total: -26.21 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.69 Total: -36.38 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.38 -8.85 -38.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260629453.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.190 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds