Wall clock time and date at job start Mon Mar 30 2020 02:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.46894 * 2 1 4 4 C 1.38836 * 119.73739 * 270.02158 * 3 2 1 5 5 C 1.37747 * 120.66798 * 179.97438 * 4 3 2 6 6 C 1.39126 * 119.77857 * 359.97391 * 5 4 3 7 7 N 1.37692 * 133.50671 * 180.02562 * 6 5 4 8 8 H 0.96995 * 125.06396 * 359.97438 * 7 6 5 9 9 C 1.36824 * 109.87093 * 179.97438 * 7 6 5 10 10 C 1.50700 * 125.03419 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.46869 * 95.02541 * 10 9 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.34240 * 109.93409 * 0.26283 * 9 7 6 20 20 C 1.40671 * 119.33229 * 0.02562 * 6 5 4 21 21 C 1.36627 * 119.73705 * 90.00082 * 3 2 1 22 22 H 1.08995 * 109.46895 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47257 * 299.99938 * 1 2 3 24 24 H 1.09002 * 109.47420 * 60.00031 * 1 2 3 25 25 H 1.08998 * 109.47257 * 240.00062 * 2 1 3 26 26 H 1.09002 * 109.47420 * 119.99968 * 2 1 3 27 27 H 1.08007 * 119.66448 * 359.97438 * 4 3 2 28 28 H 1.08004 * 120.10908 * 179.97438 * 5 4 3 29 29 H 1.09004 * 109.47210 * 335.02834 * 10 9 7 30 30 H 1.08994 * 109.47551 * 215.02487 * 10 9 7 31 31 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 32 32 H 1.07997 * 126.50246 * 179.70784 * 19 9 7 33 33 H 1.08000 * 120.11475 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2614 2.0703 -1.2055 5 6 2.7199 3.3690 -1.2279 6 6 2.9561 4.0391 -0.0317 7 7 3.4026 5.3054 0.2733 8 1 3.6422 5.9835 -0.3775 9 6 3.4580 5.4645 1.6311 10 6 3.9010 6.7197 2.3377 11 6 2.6945 7.5545 2.6823 12 1 1.7059 7.2103 2.4167 13 6 2.8524 8.7547 3.3424 14 7 4.0563 9.1736 3.6662 15 14 1.3565 9.7857 3.7763 16 1 0.4571 9.0045 4.6630 17 1 1.7926 11.0204 4.4769 18 1 0.6305 10.1524 2.5339 19 6 3.0653 4.3348 2.2407 20 6 2.7224 3.3766 1.1870 21 6 2.2581 2.0598 1.1863 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.0782 1.5519 -2.1352 28 1 2.8955 3.8654 -2.1709 29 1 4.5628 7.2896 1.6854 30 1 4.4321 6.4541 3.2517 31 1 4.1674 10.0182 4.1302 32 1 3.0111 4.1650 3.3059 33 1 2.0778 1.5482 2.1203 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260629453.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:17 Heat of formation + Delta-G solvation = 12.669728 kcal Electronic energy + Delta-G solvation = -14791.802554 eV Core-core repulsion = 12394.947095 eV Total energy + Delta-G solvation = -2396.855459 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.08103 -38.58345 -35.43863 -34.04326 -32.68179 -31.63360 -29.38716 -28.32065 -25.48348 -24.23194 -22.66003 -21.47790 -20.88626 -18.67659 -18.42473 -16.91622 -16.38335 -16.01067 -15.42544 -15.12809 -14.80904 -14.36694 -14.27110 -14.02522 -13.91242 -13.54600 -13.43254 -13.01648 -12.67377 -12.59337 -12.04302 -12.01753 -11.85814 -11.68226 -11.49328 -11.47982 -10.65711 -10.52576 -8.85541 -8.52998 -8.21847 -6.39384 0.31860 0.77530 1.38927 1.41235 1.49629 1.92028 2.33511 2.41096 3.02918 3.06351 3.84059 4.01107 4.13538 4.34319 4.37516 4.56735 4.61441 4.66227 4.77043 4.85104 4.93345 5.11285 5.16458 5.19233 5.23278 5.29573 5.32196 5.48692 5.59982 5.66475 5.88166 5.95706 6.06664 6.12603 6.38293 6.69746 6.79496 7.30011 8.83306 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.042239 B = 0.005331 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.739748 B = 5251.385592 C = 5477.079459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.113 4.113 4 C -0.103 4.103 5 C -0.131 4.131 6 C 0.065 3.935 7 N -0.591 5.591 8 H 0.418 0.582 9 C 0.117 3.883 10 C 0.079 3.921 11 C -0.534 4.534 12 H 0.052 0.948 13 C 0.012 3.988 14 N -0.925 5.925 15 Si 0.966 3.034 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.269 1.269 19 C -0.249 4.249 20 C -0.123 4.123 21 C -0.090 4.090 22 H 0.072 0.928 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.153 0.847 28 H 0.139 0.861 29 H 0.014 0.986 30 H 0.025 0.975 31 H 0.268 0.732 32 H 0.135 0.865 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.683 -15.086 -9.374 18.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.114 4.114 4 C -0.122 4.122 5 C -0.152 4.152 6 C -0.041 4.041 7 N -0.194 5.194 8 H 0.256 0.744 9 C 0.008 3.992 10 C 0.042 3.958 11 C -0.572 4.572 12 H 0.070 0.930 13 C -0.188 4.188 14 N -0.564 5.564 15 Si 0.790 3.210 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.194 1.194 19 C -0.274 4.274 20 C -0.128 4.128 21 C -0.108 4.108 22 H 0.091 0.909 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.105 0.895 26 H 0.091 0.909 27 H 0.171 0.829 28 H 0.157 0.843 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.153 0.847 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.545 -14.842 -9.348 18.120 hybrid contribution -0.207 1.442 0.393 1.509 sum -4.752 -13.399 -8.955 16.803 Atomic orbital electron populations 1.21748 0.94652 1.02221 1.01620 1.20487 0.96161 0.90911 1.03540 1.19648 1.01775 0.97765 0.92211 1.20976 0.99449 0.93280 0.98498 1.20316 1.04610 0.95727 0.94525 1.18680 1.03290 0.85875 0.96282 1.41825 1.58742 1.12521 1.06332 0.74411 1.20946 0.98666 0.96953 0.82615 1.17788 0.96144 0.87713 0.94196 1.21248 0.92908 1.04684 1.38405 0.93011 1.25850 0.99102 0.98681 0.95129 1.70046 1.23303 1.22296 1.40800 0.85486 0.79016 0.77800 0.78677 1.19463 1.20253 1.19431 1.21466 1.14129 0.93535 0.98227 1.19487 1.05239 0.95545 0.92508 1.20281 0.99744 0.91953 0.98865 0.90897 0.93875 0.92729 0.89517 0.90888 0.82909 0.84329 0.96780 0.95695 0.92293 0.84669 0.85750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.89 71.98 0.71 -1.74 16 2 C -0.07 -1.34 6.04 29.85 0.18 -1.16 16 3 C -0.11 -2.89 5.10 -20.10 -0.10 -2.99 16 4 C -0.10 -2.52 9.66 22.30 0.22 -2.30 16 5 C -0.13 -3.74 10.08 22.37 0.23 -3.52 16 6 C 0.07 2.39 7.28 39.03 0.28 2.68 16 7 N -0.59 -23.29 6.07 -175.91 -1.07 -24.35 16 8 H 0.42 14.42 8.96 -92.71 -0.83 13.59 16 9 C 0.12 5.40 6.27 40.87 0.26 5.66 16 10 C 0.08 4.20 5.48 29.10 0.16 4.35 16 11 C -0.53 -30.30 9.09 25.60 0.23 -30.07 16 12 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 13 C 0.01 0.65 5.46 84.66 0.46 1.11 16 14 N -0.93 -54.43 13.29 21.45 0.28 -54.14 16 15 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 19 C -0.25 -10.99 10.95 23.51 0.26 -10.74 16 20 C -0.12 -4.78 6.37 -20.20 -0.13 -4.91 16 21 C -0.09 -2.85 9.67 22.23 0.22 -2.64 16 22 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.09 1.24 8.08 -2.39 -0.02 1.22 16 26 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 27 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 28 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 29 H 0.01 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.27 14.80 8.31 -92.70 -0.77 14.03 16 32 H 0.14 5.80 8.06 -2.91 -0.02 5.77 16 33 H 0.12 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -64.38 285.68 4.48 -59.90 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.27 Total: 18.96 kcal Atomic # 6 Polarization: -49.22 SS G_CDS: 2.97 Total: -46.25 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -0.78 Total: -78.49 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -64.38 4.48 -59.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260629453.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.574 kcal (2) G-P(sol) polarization free energy of solvation -64.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds