Wall clock time and date at job start Mon Mar 30 2020 02:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.36668 * 120.11709 * 2 1 4 4 C 1.38787 * 120.52921 * 180.02562 * 3 2 1 5 5 C 1.37793 * 120.66535 * 359.97428 * 4 3 2 6 6 C 1.50703 * 120.10942 * 179.97438 * 5 4 3 7 7 C 1.39078 * 119.78020 * 0.25840 * 5 4 3 8 8 N 1.37692 * 133.51793 * 179.72636 * 7 5 4 9 9 H 0.96998 * 125.06229 * 0.02996 * 8 7 5 10 10 C 1.36832 * 109.87872 * 180.02562 * 8 7 5 11 11 C 1.50702 * 125.03355 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.47091 * 94.99683 * 11 10 8 13 13 H 1.08006 * 120.00029 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00230 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00392 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99787 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47663 * 89.99660 * 16 14 12 18 18 H 1.48501 * 109.47191 * 209.99994 * 16 14 12 19 19 H 1.48509 * 109.47081 * 329.99878 * 16 14 12 20 20 C 1.34247 * 109.93651 * 359.49290 * 10 8 7 21 21 C 1.39591 * 120.12241 * 179.97438 * 2 1 3 22 22 H 1.09007 * 109.47588 * 90.00405 * 1 2 3 23 23 H 1.08999 * 109.47438 * 210.00094 * 1 2 3 24 24 H 1.09002 * 109.47663 * 329.99983 * 1 2 3 25 25 H 1.07996 * 119.73453 * 359.97438 * 3 2 1 26 26 H 1.07993 * 119.66990 * 179.97438 * 4 3 2 27 27 H 1.09002 * 109.47152 * 90.00084 * 6 5 4 28 28 H 1.09001 * 109.46980 * 330.00184 * 6 5 4 29 29 H 1.09004 * 109.47113 * 210.00165 * 6 5 4 30 30 H 1.08999 * 109.46912 * 214.99743 * 11 10 8 31 31 H 1.08999 * 109.46582 * 334.99933 * 11 10 8 32 32 H 0.96998 * 120.00160 * 180.02562 * 15 14 12 33 33 H 1.08000 * 126.50271 * 179.91265 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1927 1.1822 0.0000 4 6 3.5805 1.1922 -0.0005 5 6 4.2918 0.0120 -0.0005 6 6 5.7986 0.0375 -0.0017 7 6 3.6145 -1.2027 -0.0055 8 7 4.0249 -2.5170 -0.0116 9 1 4.9488 -2.8123 -0.0131 10 6 2.9352 -3.3447 -0.0150 11 6 2.9927 -4.8506 -0.0225 12 6 2.8890 -5.3642 1.3904 13 1 2.7908 -4.6696 2.2117 14 6 2.9183 -6.7208 1.6348 15 7 2.8283 -7.1691 2.8678 16 14 3.0874 -7.9221 0.2143 17 1 4.5260 -8.1884 -0.0404 18 1 2.4018 -9.1940 0.5573 19 1 2.4688 -7.3391 -1.0034 20 6 1.8074 -2.6167 -0.0003 21 6 2.2074 -1.2074 0.0005 22 1 -0.3634 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6503 2.1160 -0.0004 26 1 4.1083 2.1343 -0.0009 27 1 6.1627 0.0441 1.0257 28 1 6.1464 0.9333 -0.5162 29 1 6.1765 -0.8465 -0.5155 30 1 2.1650 -5.2428 -0.6134 31 1 3.9370 -5.1759 -0.4589 32 1 2.8493 -8.1235 3.0397 33 1 0.7968 -2.9976 -0.0003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260714497.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:05 Heat of formation + Delta-G solvation = 32.051196 kcal Electronic energy + Delta-G solvation = -15100.494388 eV Core-core repulsion = 12704.479372 eV Total energy + Delta-G solvation = -2396.015016 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.80751 -37.02749 -33.82544 -33.12049 -30.59410 -29.48831 -29.08049 -26.93087 -24.48827 -22.94788 -21.49353 -19.80688 -19.44503 -16.89656 -16.60145 -15.43573 -14.75756 -14.42734 -14.20822 -13.92100 -13.07718 -12.95876 -12.83195 -12.73010 -12.56657 -12.31800 -12.03066 -11.68763 -11.61047 -11.07314 -10.82252 -10.62807 -10.51064 -10.30898 -10.07705 -9.47933 -8.85155 -8.68361 -7.57297 -6.95529 -6.16274 -4.17409 1.54646 2.07414 3.21035 3.30081 3.31342 3.43369 3.73612 4.25831 4.32135 5.03865 5.15046 5.16602 5.31513 5.42925 5.52633 5.64958 5.71286 5.82768 5.90860 5.94377 6.06547 6.12910 6.23602 6.39795 6.53334 6.62304 6.72342 6.84470 6.90965 7.06523 7.30564 7.51517 7.55390 7.79862 8.13633 8.40439 8.89213 9.41931 10.96328 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.033921 B = 0.006663 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.258072 B = 4201.059947 C = 4655.937930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.051 4.051 3 C -0.153 4.153 4 C -0.115 4.115 5 C -0.102 4.102 6 C -0.108 4.108 7 C 0.091 3.909 8 N -0.590 5.590 9 H 0.410 0.590 10 C 0.144 3.856 11 C 0.036 3.964 12 C -0.519 4.519 13 H 0.076 0.924 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.264 1.264 20 C -0.228 4.228 21 C -0.093 4.093 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.023 0.977 32 H 0.266 0.734 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.233 13.215 -7.459 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.052 4.052 3 C -0.173 4.173 4 C -0.134 4.134 5 C -0.105 4.105 6 C -0.164 4.164 7 C -0.016 4.016 8 N -0.192 5.192 9 H 0.247 0.753 10 C 0.036 3.964 11 C -0.002 4.002 12 C -0.557 4.557 13 H 0.094 0.906 14 C -0.130 4.130 15 N -0.533 5.533 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.188 1.188 20 C -0.251 4.251 21 C -0.098 4.098 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.132 0.868 26 H 0.134 0.866 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.325 12.965 -7.345 14.960 hybrid contribution 0.585 -0.890 -0.492 1.173 sum 1.910 12.075 -7.837 14.521 Atomic orbital electron populations 1.20696 0.91754 1.02376 1.01746 1.18992 0.95334 0.91298 0.99532 1.20327 0.93892 0.96785 1.06260 1.20465 0.93833 0.96006 1.03129 1.18768 0.94962 0.90311 1.06465 1.20649 0.91917 1.02010 1.01860 1.18025 0.93717 0.84732 1.05129 1.41872 1.08637 1.03673 1.65066 0.75334 1.20914 0.85241 0.93890 0.96383 1.18548 0.97967 0.84273 0.99399 1.20893 1.51518 0.92692 0.90643 0.90556 1.24974 0.94356 0.98131 0.95586 1.69887 1.49836 1.14403 1.19152 0.86823 0.78656 0.80936 0.83204 1.20184 1.21000 1.18817 1.21263 0.97838 0.89534 1.16478 1.19112 0.91761 0.93465 1.05446 0.91691 0.91388 0.92172 0.86845 0.86598 0.91640 0.91699 0.92583 0.93539 0.95921 0.92422 0.84193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 9.95 36.00 0.36 -1.11 16 2 C -0.05 -0.84 5.87 -104.69 -0.61 -1.45 16 3 C -0.15 -2.24 9.62 -39.95 -0.38 -2.62 16 4 C -0.12 -1.65 9.67 -39.54 -0.38 -2.03 16 5 C -0.10 -1.60 5.89 -104.47 -0.62 -2.22 16 6 C -0.11 -1.32 10.02 36.01 0.36 -0.96 16 7 C 0.09 1.68 6.95 -83.99 -0.58 1.10 16 8 N -0.59 -11.13 6.07 -6.95 -0.04 -11.17 16 9 H 0.41 6.74 8.86 -40.82 -0.36 6.38 16 10 C 0.14 3.07 6.27 -81.77 -0.51 2.55 16 11 C 0.04 0.83 4.55 -29.04 -0.13 0.70 16 12 C -0.52 -14.41 9.65 -34.44 -0.33 -14.74 16 13 H 0.08 2.36 7.98 -52.48 -0.42 1.94 16 14 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 15 N -0.89 -26.90 13.96 55.43 0.77 -26.12 16 16 Si 0.88 20.64 27.47 -169.99 -4.67 15.97 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 19 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 20 C -0.23 -4.68 10.65 -37.66 -0.40 -5.08 16 21 C -0.09 -1.78 6.14 -105.13 -0.65 -2.42 16 22 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 23 H 0.07 0.95 7.90 -51.93 -0.41 0.54 16 24 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 25 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 26 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.06 0.66 7.98 -51.93 -0.41 0.25 16 30 H 0.05 1.06 7.20 -51.93 -0.37 0.69 16 31 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 32 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.14 2.73 8.06 -52.49 -0.42 2.31 16 LS Contribution 281.38 15.07 4.24 4.24 Total: -1.00 -30.67 281.38 -8.17 -38.84 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -4.49 Total: 4.59 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -3.98 Total: -26.35 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.73 Total: -37.29 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.67 -8.17 -38.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260714497.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.891 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds