Wall clock time and date at job start Mon Mar 30 2020 02:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.36668 * 120.11709 * 2 1 4 4 C 1.38787 * 120.52921 * 180.02562 * 3 2 1 5 5 C 1.37793 * 120.66535 * 359.97428 * 4 3 2 6 6 C 1.50703 * 120.10942 * 179.97438 * 5 4 3 7 7 C 1.39078 * 119.78020 * 0.25840 * 5 4 3 8 8 N 1.37692 * 133.51793 * 179.72636 * 7 5 4 9 9 H 0.96998 * 125.06229 * 0.02996 * 8 7 5 10 10 C 1.36832 * 109.87872 * 180.02562 * 8 7 5 11 11 C 1.50702 * 125.03355 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.47091 * 94.99683 * 11 10 8 13 13 H 1.08006 * 120.00029 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00230 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00392 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99787 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47663 * 89.99660 * 16 14 12 18 18 H 1.48501 * 109.47191 * 209.99994 * 16 14 12 19 19 H 1.48509 * 109.47081 * 329.99878 * 16 14 12 20 20 C 1.34247 * 109.93651 * 359.49290 * 10 8 7 21 21 C 1.39591 * 120.12241 * 179.97438 * 2 1 3 22 22 H 1.09007 * 109.47588 * 90.00405 * 1 2 3 23 23 H 1.08999 * 109.47438 * 210.00094 * 1 2 3 24 24 H 1.09002 * 109.47663 * 329.99983 * 1 2 3 25 25 H 1.07996 * 119.73453 * 359.97438 * 3 2 1 26 26 H 1.07993 * 119.66990 * 179.97438 * 4 3 2 27 27 H 1.09002 * 109.47152 * 90.00084 * 6 5 4 28 28 H 1.09001 * 109.46980 * 330.00184 * 6 5 4 29 29 H 1.09004 * 109.47113 * 210.00165 * 6 5 4 30 30 H 1.08999 * 109.46912 * 214.99743 * 11 10 8 31 31 H 1.08999 * 109.46582 * 334.99933 * 11 10 8 32 32 H 0.96998 * 120.00160 * 180.02562 * 15 14 12 33 33 H 1.08000 * 126.50271 * 179.91265 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1927 1.1822 0.0000 4 6 3.5805 1.1922 -0.0005 5 6 4.2918 0.0120 -0.0005 6 6 5.7986 0.0375 -0.0017 7 6 3.6145 -1.2027 -0.0055 8 7 4.0249 -2.5170 -0.0116 9 1 4.9488 -2.8123 -0.0131 10 6 2.9352 -3.3447 -0.0150 11 6 2.9927 -4.8506 -0.0225 12 6 2.8890 -5.3642 1.3904 13 1 2.7908 -4.6696 2.2117 14 6 2.9183 -6.7208 1.6348 15 7 2.8283 -7.1691 2.8678 16 14 3.0874 -7.9221 0.2143 17 1 4.5260 -8.1884 -0.0404 18 1 2.4018 -9.1940 0.5573 19 1 2.4688 -7.3391 -1.0034 20 6 1.8074 -2.6167 -0.0003 21 6 2.2074 -1.2074 0.0005 22 1 -0.3634 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6503 2.1160 -0.0004 26 1 4.1083 2.1343 -0.0009 27 1 6.1627 0.0441 1.0257 28 1 6.1464 0.9333 -0.5162 29 1 6.1765 -0.8465 -0.5155 30 1 2.1650 -5.2428 -0.6134 31 1 3.9370 -5.1759 -0.4589 32 1 2.8493 -8.1235 3.0397 33 1 0.7968 -2.9976 -0.0003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260714497.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:05 Heat of formation + Delta-G solvation = 14.412412 kcal Electronic energy + Delta-G solvation = -15101.259263 eV Core-core repulsion = 12704.479372 eV Total energy + Delta-G solvation = -2396.779891 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.18063 -38.32592 -35.29806 -34.87255 -32.43192 -30.87506 -30.15789 -28.53807 -25.58146 -24.83712 -22.77852 -21.20921 -20.96005 -19.03819 -17.92580 -16.87925 -16.29279 -15.86824 -15.58815 -15.31482 -14.70690 -14.28692 -14.11117 -14.07077 -13.92055 -13.69559 -13.42574 -13.30265 -12.66471 -12.52232 -12.43999 -12.09537 -12.00298 -11.77445 -11.63999 -11.58731 -10.83130 -10.21396 -8.93394 -8.36310 -8.31107 -6.41093 0.27545 0.81248 1.35908 1.38834 1.50266 1.89228 2.31877 2.33699 2.99818 3.01027 3.85752 4.01838 4.10852 4.29244 4.36460 4.41193 4.65568 4.76624 4.78075 4.80436 4.85240 4.89739 4.95508 5.01140 5.10582 5.22152 5.27856 5.41449 5.46691 5.69789 5.81305 5.98650 6.09919 6.18065 6.38871 6.62522 6.79395 7.22634 8.83107 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.033921 B = 0.006663 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.258072 B = 4201.059947 C = 4655.937930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.067 4.067 3 C -0.150 4.150 4 C -0.107 4.107 5 C -0.115 4.115 6 C -0.106 4.106 7 C 0.074 3.926 8 N -0.588 5.588 9 H 0.417 0.583 10 C 0.114 3.886 11 C 0.045 3.955 12 C -0.527 4.527 13 H 0.024 0.976 14 C 0.011 3.989 15 N -0.946 5.946 16 Si 0.954 3.046 17 H -0.263 1.263 18 H -0.282 1.282 19 H -0.242 1.242 20 C -0.239 4.239 21 C -0.127 4.127 22 H 0.077 0.923 23 H 0.052 0.948 24 H 0.084 0.916 25 H 0.148 0.852 26 H 0.154 0.846 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.269 0.731 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.867 15.111 -9.355 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.067 4.067 3 C -0.169 4.169 4 C -0.126 4.126 5 C -0.117 4.117 6 C -0.162 4.162 7 C -0.033 4.033 8 N -0.192 5.192 9 H 0.255 0.745 10 C 0.006 3.994 11 C 0.007 3.993 12 C -0.565 4.565 13 H 0.043 0.957 14 C -0.187 4.187 15 N -0.586 5.586 16 Si 0.776 3.224 17 H -0.188 1.188 18 H -0.208 1.208 19 H -0.165 1.165 20 C -0.263 4.263 21 C -0.131 4.131 22 H 0.096 0.904 23 H 0.071 0.929 24 H 0.103 0.897 25 H 0.166 0.834 26 H 0.171 0.829 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.971 14.890 -9.251 17.640 hybrid contribution 0.359 -1.268 0.184 1.331 sum 2.330 13.621 -9.067 16.528 Atomic orbital electron populations 1.20727 0.90097 1.02829 1.02703 1.19403 0.96882 0.91019 0.99432 1.20789 0.94424 0.97355 1.04349 1.21002 0.94028 0.96981 1.00591 1.19239 0.96904 0.89571 1.06029 1.20700 0.89601 1.03393 1.02533 1.18473 0.93969 0.85228 1.05642 1.41762 1.08440 1.03840 1.65148 0.74484 1.20650 0.86488 0.93276 0.99033 1.18341 0.98737 0.85844 0.96383 1.21061 1.51309 0.92283 0.91806 0.95745 1.25981 0.93697 1.00267 0.98716 1.70053 1.51487 1.15102 1.21981 0.85616 0.79397 0.77723 0.79696 1.18775 1.20789 1.16545 1.21440 0.97650 0.91068 1.16140 1.19383 0.92724 0.93572 1.07467 0.90416 0.92937 0.89701 0.83448 0.82856 0.91212 0.89015 0.92602 0.93005 0.94335 0.92166 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.73 9.95 71.23 0.71 -2.02 16 2 C -0.07 -2.10 5.87 -19.91 -0.12 -2.22 16 3 C -0.15 -3.89 9.62 22.03 0.21 -3.67 16 4 C -0.11 -2.67 9.67 22.30 0.22 -2.46 16 5 C -0.11 -3.34 5.89 -19.77 -0.12 -3.46 16 6 C -0.11 -2.31 10.02 71.24 0.71 -1.60 16 7 C 0.07 2.70 6.95 39.03 0.27 2.97 16 8 N -0.59 -22.56 6.07 -175.90 -1.07 -23.63 16 9 H 0.42 13.91 8.86 -92.71 -0.82 13.09 16 10 C 0.11 5.02 6.27 40.87 0.26 5.28 16 11 C 0.04 2.11 4.55 29.10 0.13 2.24 16 12 C -0.53 -30.43 9.65 25.60 0.25 -30.18 16 13 H 0.02 1.61 7.98 -2.91 -0.02 1.58 16 14 C 0.01 0.63 5.47 84.66 0.46 1.10 16 15 N -0.95 -58.92 13.96 21.45 0.30 -58.63 16 16 Si 0.95 42.61 27.47 68.60 1.88 44.49 16 17 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 20 C -0.24 -10.20 10.65 23.51 0.25 -9.95 16 21 C -0.13 -4.88 6.14 -20.20 -0.12 -5.01 16 22 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 23 H 0.05 1.48 7.90 -2.39 -0.02 1.46 16 24 H 0.08 1.70 8.08 -2.39 -0.02 1.68 16 25 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 26 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.09 1.51 8.09 -2.39 -0.02 1.49 16 29 H 0.05 1.21 7.98 -2.38 -0.02 1.20 16 30 H 0.05 2.36 7.20 -2.39 -0.02 2.34 16 31 H 0.04 1.67 7.57 -2.39 -0.02 1.65 16 32 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.14 5.65 8.06 -2.91 -0.02 5.63 16 Total: -1.00 -69.19 281.38 4.46 -64.73 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.23 Total: 22.01 kcal Atomic # 6 Polarization: -52.09 SS G_CDS: 3.11 Total: -48.97 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -0.77 Total: -82.26 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.49 kcal Total: -69.19 4.46 -64.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260714497.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.144 kcal (2) G-P(sol) polarization free energy of solvation -69.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds