Wall clock time and date at job start Mon Mar 30 2020 02:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50694 * 109.47384 * 2 1 4 4 C 1.37787 * 120.11050 * 265.00120 * 3 2 1 5 5 C 1.38790 * 120.66750 * 180.02562 * 4 3 2 6 6 C 1.36659 * 120.52963 * 0.02562 * 5 4 3 7 7 C 1.39591 * 119.76243 * 0.02562 * 6 5 4 8 8 C 1.46494 * 134.03536 * 179.97438 * 7 6 5 9 9 C 1.34232 * 106.99721 * 180.02562 * 8 7 6 10 10 C 1.50700 * 125.03081 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46869 * 85.02737 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 10 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 N 1.36833 * 109.94362 * 0.26654 * 9 8 7 20 20 H 0.96997 * 125.06536 * 179.73133 * 19 9 8 21 21 C 1.37703 * 109.87094 * 359.55329 * 19 9 8 22 22 H 1.08999 * 109.47297 * 60.00359 * 1 2 3 23 23 H 1.09000 * 109.47327 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47275 * 300.00176 * 1 2 3 25 25 H 1.09004 * 109.47275 * 239.99824 * 2 1 3 26 26 H 1.09002 * 109.47015 * 120.00087 * 2 1 3 27 27 H 1.07999 * 119.66785 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.73416 * 180.02562 * 5 4 3 29 29 H 1.07999 * 120.12045 * 180.02562 * 6 5 4 30 30 H 1.07997 * 126.49768 * 359.97438 * 8 7 6 31 31 H 1.09004 * 109.47210 * 325.03030 * 10 9 8 32 32 H 1.08994 * 109.47551 * 205.02682 * 10 9 8 33 33 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3607 2.0378 -1.1874 5 6 2.8250 3.3457 -1.2008 6 6 2.9651 4.0446 -0.0348 7 6 2.6392 3.4386 1.1797 8 6 2.6669 3.8782 2.5769 9 6 2.2347 2.8481 3.3210 10 6 2.1025 2.8608 4.8222 11 6 0.7698 3.4517 5.2041 12 1 0.0866 3.7843 4.4365 13 6 0.4199 3.5619 6.5332 14 7 -0.7454 4.0725 6.8663 15 14 1.6012 2.9860 7.8608 16 1 2.4865 4.1104 8.2572 17 1 0.8301 2.5227 9.0424 18 1 2.4259 1.8671 7.3381 19 7 1.9379 1.7825 2.5155 20 1 1.6111 0.9235 2.8256 21 6 2.1687 2.1126 1.1987 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.2565 1.4980 -2.1170 28 1 3.0776 3.8148 -2.1403 29 1 3.3265 5.0621 -0.0530 30 1 2.9772 4.8471 2.9394 31 1 2.9033 3.4623 5.2524 32 1 2.1700 1.8413 5.2016 33 1 -0.9913 4.1503 7.8014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260810414.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:27 Heat of formation + Delta-G solvation = 32.859995 kcal Electronic energy + Delta-G solvation = -15102.982356 eV Core-core repulsion = 12707.002412 eV Total energy + Delta-G solvation = -2395.979944 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.79501 -36.97828 -34.06537 -33.17335 -30.71921 -30.06203 -28.36658 -27.06391 -23.79197 -22.75312 -21.41579 -19.96789 -19.45982 -17.13269 -16.89892 -15.52830 -14.95747 -14.42053 -14.20471 -13.97071 -13.57159 -13.33996 -12.80722 -12.53332 -12.36711 -12.00419 -11.93618 -11.73295 -11.32739 -11.10762 -10.85005 -10.71041 -10.43148 -10.23375 -10.08519 -9.48791 -9.00785 -8.68442 -7.58789 -7.03236 -6.16509 -4.17649 1.56248 2.06644 3.21727 3.29894 3.30286 3.42627 3.72942 4.30246 4.31915 4.91697 5.03987 5.14830 5.30098 5.39674 5.44354 5.55813 5.64069 5.77298 5.89688 5.92408 6.04778 6.24371 6.26596 6.32773 6.50729 6.60645 6.73231 6.81682 6.91348 6.99876 7.29252 7.50228 7.54711 7.78850 8.12636 8.40066 8.88899 9.41678 10.96080 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.033846 B = 0.006610 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.083800 B = 4235.005009 C = 4632.950944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.092 4.092 4 C -0.117 4.117 5 C -0.152 4.152 6 C -0.083 4.083 7 C -0.095 4.095 8 C -0.232 4.232 9 C 0.146 3.854 10 C 0.036 3.964 11 C -0.519 4.519 12 H 0.076 0.924 13 C 0.072 3.928 14 N -0.895 5.895 15 Si 0.878 3.122 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.266 1.266 19 N -0.590 5.590 20 H 0.410 0.590 21 C 0.092 3.908 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.141 0.859 31 H 0.043 0.957 32 H 0.027 0.973 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.398 -6.193 -12.475 15.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.095 4.095 4 C -0.137 4.137 5 C -0.171 4.171 6 C -0.101 4.101 7 C -0.101 4.101 8 C -0.255 4.255 9 C 0.038 3.962 10 C -0.002 4.002 11 C -0.558 4.558 12 H 0.094 0.906 13 C -0.131 4.131 14 N -0.533 5.533 15 Si 0.704 3.296 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.191 1.191 19 N -0.192 5.192 20 H 0.246 0.754 21 C -0.015 4.015 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.159 0.841 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.236 -6.240 -12.235 15.084 hybrid contribution 0.243 -0.537 0.940 1.109 sum 6.479 -6.777 -11.296 14.680 Atomic orbital electron populations 1.21761 0.94922 1.01303 1.02530 1.20418 0.96079 0.93086 1.02136 1.18773 1.04350 0.95851 0.90492 1.20494 1.01933 0.95313 0.95914 1.20445 1.04216 0.95028 0.97437 1.20190 0.99979 0.99174 0.90796 1.19301 1.03363 0.93437 0.93961 1.21318 1.14550 0.99868 0.89774 1.20902 0.94930 0.86018 0.94397 1.18545 0.99240 0.98094 0.84358 1.20889 0.99947 1.41523 0.93394 0.90560 1.24979 0.95114 0.94520 0.98442 1.69891 1.20841 1.44631 1.17907 0.86816 0.81328 0.79773 0.81642 1.19876 1.21113 1.19056 1.41876 1.58589 1.14608 1.04146 0.75357 1.18037 1.03465 0.95301 0.84729 0.92460 0.92700 0.92506 0.91178 0.91999 0.86662 0.86833 0.86675 0.84120 0.93945 0.95474 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.89 37.15 0.37 -1.41 16 2 C -0.08 -0.98 6.07 -27.89 -0.17 -1.15 16 3 C -0.09 -1.40 5.15 -104.48 -0.54 -1.94 16 4 C -0.12 -1.64 9.65 -39.54 -0.38 -2.03 16 5 C -0.15 -2.16 9.97 -39.95 -0.40 -2.56 16 6 C -0.08 -1.34 10.05 -39.65 -0.40 -1.74 16 7 C -0.10 -1.81 6.37 -105.13 -0.67 -2.48 16 8 C -0.23 -4.75 10.95 -37.67 -0.41 -5.16 16 9 C 0.15 3.09 6.27 -81.77 -0.51 2.58 16 10 C 0.04 0.82 4.55 -29.03 -0.13 0.69 16 11 C -0.52 -14.39 9.65 -34.44 -0.33 -14.72 16 12 H 0.08 2.35 7.98 -52.49 -0.42 1.93 16 13 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 14 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 15 Si 0.88 20.64 27.47 -169.99 -4.67 15.97 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 19 N -0.59 -11.02 6.07 -6.95 -0.04 -11.06 16 20 H 0.41 6.73 8.96 -40.82 -0.37 6.37 16 21 C 0.09 1.67 6.97 -83.98 -0.59 1.08 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 26 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 27 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 28 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 30 H 0.14 2.73 8.06 -52.49 -0.42 2.31 16 31 H 0.04 0.95 7.58 -51.93 -0.39 0.56 16 32 H 0.03 0.60 7.19 -51.93 -0.37 0.23 16 33 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 282.12 15.07 4.25 4.25 Total: -1.00 -30.33 282.12 -8.47 -38.80 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -4.52 Total: 5.06 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -4.26 Total: -26.92 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.73 Total: -37.16 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.33 -8.47 -38.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260810414.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.659 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds