Wall clock time and date at job start Mon Mar 30 2020 02:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50694 * 109.47384 * 2 1 4 4 C 1.37787 * 120.11050 * 265.00120 * 3 2 1 5 5 C 1.38790 * 120.66750 * 180.02562 * 4 3 2 6 6 C 1.36659 * 120.52963 * 0.02562 * 5 4 3 7 7 C 1.39591 * 119.76243 * 0.02562 * 6 5 4 8 8 C 1.46494 * 134.03536 * 179.97438 * 7 6 5 9 9 C 1.34232 * 106.99721 * 180.02562 * 8 7 6 10 10 C 1.50700 * 125.03081 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46869 * 85.02737 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 10 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 N 1.36833 * 109.94362 * 0.26654 * 9 8 7 20 20 H 0.96997 * 125.06536 * 179.73133 * 19 9 8 21 21 C 1.37703 * 109.87094 * 359.55329 * 19 9 8 22 22 H 1.08999 * 109.47297 * 60.00359 * 1 2 3 23 23 H 1.09000 * 109.47327 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47275 * 300.00176 * 1 2 3 25 25 H 1.09004 * 109.47275 * 239.99824 * 2 1 3 26 26 H 1.09002 * 109.47015 * 120.00087 * 2 1 3 27 27 H 1.07999 * 119.66785 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.73416 * 180.02562 * 5 4 3 29 29 H 1.07999 * 120.12045 * 180.02562 * 6 5 4 30 30 H 1.07997 * 126.49768 * 359.97438 * 8 7 6 31 31 H 1.09004 * 109.47210 * 325.03030 * 10 9 8 32 32 H 1.08994 * 109.47551 * 205.02682 * 10 9 8 33 33 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3607 2.0378 -1.1874 5 6 2.8250 3.3457 -1.2008 6 6 2.9651 4.0446 -0.0348 7 6 2.6392 3.4386 1.1797 8 6 2.6669 3.8782 2.5769 9 6 2.2347 2.8481 3.3210 10 6 2.1025 2.8608 4.8222 11 6 0.7698 3.4517 5.2041 12 1 0.0866 3.7843 4.4365 13 6 0.4199 3.5619 6.5332 14 7 -0.7454 4.0725 6.8663 15 14 1.6012 2.9860 7.8608 16 1 2.4865 4.1104 8.2572 17 1 0.8301 2.5227 9.0424 18 1 2.4259 1.8671 7.3381 19 7 1.9379 1.7825 2.5155 20 1 1.6111 0.9235 2.8256 21 6 2.1687 2.1126 1.1987 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.2565 1.4980 -2.1170 28 1 3.0776 3.8148 -2.1403 29 1 3.3265 5.0621 -0.0530 30 1 2.9772 4.8471 2.9394 31 1 2.9033 3.4623 5.2524 32 1 2.1700 1.8413 5.2016 33 1 -0.9913 4.1503 7.8014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260810414.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:26 Heat of formation + Delta-G solvation = 15.639950 kcal Electronic energy + Delta-G solvation = -15103.729073 eV Core-core repulsion = 12707.002412 eV Total energy + Delta-G solvation = -2396.726661 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.16268 -38.25762 -35.22011 -35.16366 -32.52441 -31.38923 -29.58632 -28.66210 -25.20564 -24.31200 -22.66080 -21.26734 -21.01083 -19.03989 -18.44829 -16.90874 -16.38327 -15.99256 -15.52682 -15.25745 -14.86106 -14.73002 -14.52680 -13.93645 -13.79332 -13.61823 -13.40174 -12.87310 -12.59093 -12.57920 -12.39236 -12.02795 -11.88465 -11.78873 -11.63144 -11.47026 -10.83415 -10.35191 -8.93218 -8.44641 -8.32926 -6.41182 0.29335 0.81890 1.37210 1.38173 1.49386 1.89084 2.32431 2.33050 3.00747 3.04606 3.81287 3.97663 4.06799 4.25180 4.35328 4.45735 4.48620 4.63764 4.70725 4.78764 4.83115 4.94607 4.98984 5.02643 5.20764 5.25253 5.26697 5.37376 5.46095 5.71672 5.76801 5.96171 6.08830 6.17797 6.37562 6.62330 6.78657 7.22501 8.83001 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.033846 B = 0.006610 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.083800 B = 4235.005009 C = 4632.950944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 C -0.100 4.100 4 C -0.109 4.109 5 C -0.144 4.144 6 C -0.097 4.097 7 C -0.129 4.129 8 C -0.245 4.245 9 C 0.117 3.883 10 C 0.044 3.956 11 C -0.527 4.527 12 H 0.024 0.976 13 C 0.011 3.989 14 N -0.946 5.946 15 Si 0.954 3.046 16 H -0.263 1.263 17 H -0.282 1.282 18 H -0.242 1.242 19 N -0.588 5.588 20 H 0.417 0.583 21 C 0.076 3.924 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.027 0.973 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.153 0.847 28 H 0.150 0.850 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.051 0.949 32 H 0.040 0.960 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.042 -7.804 -14.226 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.103 4.103 4 C -0.128 4.128 5 C -0.163 4.163 6 C -0.116 4.116 7 C -0.134 4.134 8 C -0.269 4.269 9 C 0.008 3.992 10 C 0.006 3.994 11 C -0.565 4.565 12 H 0.043 0.957 13 C -0.187 4.187 14 N -0.586 5.586 15 Si 0.776 3.224 16 H -0.188 1.188 17 H -0.208 1.208 18 H -0.165 1.165 19 N -0.191 5.191 20 H 0.254 0.746 21 C -0.031 4.031 22 H 0.080 0.920 23 H 0.094 0.906 24 H 0.047 0.953 25 H 0.117 0.883 26 H 0.080 0.920 27 H 0.171 0.829 28 H 0.167 0.833 29 H 0.147 0.853 30 H 0.157 0.843 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.888 -7.865 -14.015 17.903 hybrid contribution -0.327 0.011 1.259 1.301 sum 7.562 -7.855 -12.756 16.780 Atomic orbital electron populations 1.21740 0.94854 1.02335 1.01316 1.20481 0.95989 0.91440 1.03560 1.19218 1.04012 0.97322 0.89769 1.21031 0.99666 0.95335 0.96800 1.20910 1.02293 0.95073 0.98020 1.20494 1.00301 1.00214 0.90568 1.19556 1.05325 0.94452 0.94071 1.21519 1.14411 0.99679 0.91321 1.20633 0.97293 0.87492 0.93786 1.18345 0.96635 0.98238 0.86162 1.21060 1.01298 1.41578 0.92537 0.95745 1.25989 0.97025 0.94447 1.01216 1.70056 1.23351 1.46473 1.18740 0.85610 0.78870 0.80150 0.77745 1.18809 1.20801 1.16536 1.41763 1.58635 1.14337 1.04384 0.74597 1.18455 1.03871 0.95577 0.85163 0.92026 0.90580 0.95333 0.88301 0.92027 0.82893 0.83264 0.85291 0.84346 0.93079 0.94215 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.89 71.98 0.71 -2.48 16 2 C -0.08 -1.69 6.07 29.84 0.18 -1.51 16 3 C -0.10 -2.85 5.15 -19.77 -0.10 -2.95 16 4 C -0.11 -2.64 9.65 22.30 0.22 -2.43 16 5 C -0.14 -3.60 9.97 22.03 0.22 -3.38 16 6 C -0.10 -3.02 10.05 22.23 0.22 -2.79 16 7 C -0.13 -4.94 6.37 -20.20 -0.13 -5.07 16 8 C -0.24 -10.44 10.95 23.51 0.26 -10.18 16 9 C 0.12 5.11 6.27 40.86 0.26 5.37 16 10 C 0.04 2.07 4.55 29.10 0.13 2.20 16 11 C -0.53 -30.43 9.65 25.60 0.25 -30.18 16 12 H 0.02 1.61 7.98 -2.91 -0.02 1.58 16 13 C 0.01 0.63 5.47 84.66 0.46 1.09 16 14 N -0.95 -58.93 13.96 21.45 0.30 -58.63 16 15 Si 0.95 42.62 27.47 68.60 1.88 44.51 16 16 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 19 N -0.59 -22.40 6.07 -175.91 -1.07 -23.47 16 20 H 0.42 13.95 8.96 -92.71 -0.83 13.12 16 21 C 0.08 2.74 6.97 39.03 0.27 3.01 16 22 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 23 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.10 1.62 8.05 -2.39 -0.02 1.60 16 26 H 0.06 1.35 8.12 -2.39 -0.02 1.33 16 27 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 28 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 29 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 30 H 0.14 5.68 8.06 -2.91 -0.02 5.65 16 31 H 0.05 2.29 7.58 -2.38 -0.02 2.27 16 32 H 0.04 1.74 7.19 -2.39 -0.02 1.73 16 33 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -68.62 282.12 4.28 -64.34 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.21 Total: 22.56 kcal Atomic # 6 Polarization: -52.25 SS G_CDS: 2.95 Total: -49.30 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -0.77 Total: -82.10 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.88 Total: 44.51 kcal Total: -68.62 4.28 -64.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260810414.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.976 kcal (2) G-P(sol) polarization free energy of solvation -68.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds