Wall clock time and date at job start Mon Mar 30 2020 02:47:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.39128 * 126.25063 * 2 1
4 4 C 1.39916 * 125.69523 * 359.97438 * 3 2 1
5 5 H 1.07999 * 120.00289 * 134.84595 * 4 3 2
6 6 C 1.40188 * 120.00035 * 314.84316 * 4 3 2
7 7 N 1.30751 * 119.99996 * 152.22977 * 6 4 3
8 8 Si 1.86796 * 120.00044 * 332.22281 * 6 4 3
9 9 H 1.48492 * 109.47203 * 95.39539 * 8 6 4
10 10 H 1.48505 * 109.47425 * 215.39733 * 8 6 4
11 11 H 1.48503 * 109.47345 * 335.39533 * 8 6 4
12 12 N 1.38316 * 108.60789 * 179.97438 * 3 2 1
13 13 C 1.46499 * 125.60369 * 180.26074 * 12 3 2
14 14 C 1.38048 * 108.79491 * 359.97438 * 12 3 2
15 15 C 1.38930 * 132.79535 * 180.02562 * 14 12 3
16 16 C 1.37957 * 119.89194 * 179.97438 * 15 14 12
17 17 C 1.50707 * 119.65089 * 179.97438 * 16 15 14
18 18 C 1.38942 * 120.70226 * 359.97438 * 16 15 14
19 19 C 1.36433 * 120.58941 * 0.03340 * 18 16 15
20 20 C 1.40482 * 119.80527 * 359.97438 * 19 18 16
21 21 H 1.08992 * 109.47484 * 263.74912 * 1 2 3
22 22 H 1.09001 * 109.47205 * 23.75260 * 1 2 3
23 23 H 1.09006 * 109.46728 * 143.74887 * 1 2 3
24 24 H 0.96995 * 120.00055 * 180.02562 * 7 6 4
25 25 H 1.09002 * 109.47129 * 269.69305 * 13 12 3
26 26 H 1.09001 * 109.46785 * 29.69301 * 13 12 3
27 27 H 1.08997 * 109.46949 * 149.69588 * 13 12 3
28 28 H 1.07997 * 120.05436 * 359.97328 * 15 14 12
29 29 H 1.08991 * 109.47389 * 269.98799 * 17 16 15
30 30 H 1.09001 * 109.46992 * 29.99177 * 17 16 15
31 31 H 1.09004 * 109.47135 * 149.98568 * 17 16 15
32 32 H 1.07991 * 119.70676 * 180.02562 * 18 16 15
33 33 H 1.08005 * 120.09822 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3297 1.1220 0.0000
4 6 1.8961 2.4522 -0.0005
5 1 2.3556 3.1703 0.6626
6 6 0.8652 2.8531 -0.8618
7 7 0.0955 3.8588 -0.5365
8 14 0.5913 1.9507 -2.4742
9 1 -0.4568 0.9151 -2.2901
10 1 0.1554 2.9168 -3.5144
11 1 1.8578 1.3028 -2.9003
12 7 3.6478 0.7028 0.0006
13 6 4.8216 1.5794 0.0062
14 6 3.6756 -0.6774 0.0015
15 6 4.7138 -1.6006 0.0029
16 6 4.4328 -2.9513 0.0041
17 6 5.5633 -3.9480 0.0050
18 6 3.1187 -3.4025 0.0046
19 6 2.0807 -2.5172 0.0032
20 6 2.3404 -1.1366 0.0017
21 1 -0.3634 -0.1119 1.0215
22 1 -0.3634 0.9406 -0.4139
23 1 -0.3633 -0.8288 -0.6077
24 1 -0.6180 4.1359 -1.1323
25 1 5.1178 1.7966 -1.0201
26 1 4.5776 2.5099 0.5186
27 1 5.6427 1.0838 0.5242
28 1 5.7391 -1.2615 0.0029
29 1 5.8356 -4.1894 -1.0224
30 1 6.4245 -3.5201 0.5183
31 1 5.2473 -4.8553 0.5199
32 1 2.9172 -4.4634 0.0061
33 1 1.0622 -2.8767 0.0032
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260811775.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:47:49
Heat of formation + Delta-G solvation = 24.592240 kcal
Electronic energy + Delta-G solvation = -15708.339605 eV
Core-core repulsion = 13312.001144 eV
Total energy + Delta-G solvation = -2396.338461 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 229.116 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-41.82287 -38.15876 -35.57082 -34.43670 -32.18856 -31.11841 -29.59314 -28.69424
-26.39657 -24.61237 -22.82800 -21.18507 -20.53983 -18.80137 -17.41256 -17.06370
-16.54320 -15.95255 -15.45797 -14.94187 -14.69324 -14.52197 -14.30694 -14.18930
-13.68006 -13.53114 -13.33281 -12.94742 -12.82115 -12.73486 -12.51856 -12.18233
-12.15682 -11.68368 -11.48483 -11.31683 -10.95917 -10.06026 -8.88082 -8.76913
-8.13208 -6.43443 0.43393 0.98129 1.26644 1.30203 1.41787 1.92954
2.15939 2.31839 2.94550 3.23321 4.03332 4.09851 4.25371 4.43635
4.50579 4.59975 4.62732 4.67149 4.77660 4.86272 4.98351 5.00257
5.00994 5.05402 5.19525 5.25889 5.33504 5.49839 5.52903 5.81342
5.92453 6.00331 6.19036 6.32873 6.45508 6.68068 6.88418 7.10608
8.21259
Molecular weight = 229.12amu
Principal moments of inertia in cm(-1)
A = 0.034929 B = 0.009416 C = 0.008298
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 801.422670 B = 2972.814720 C = 3373.487925
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.051 4.051
2 C -0.324 4.324
3 C 0.247 3.753
4 C -0.509 4.509
5 H 0.064 0.936
6 C 0.090 3.910
7 N -0.838 5.838
8 Si 0.932 3.068
9 H -0.242 1.242
10 H -0.270 1.270
11 H -0.279 1.279
12 N -0.514 5.514
13 C 0.091 3.909
14 C 0.036 3.964
15 C -0.128 4.128
16 C -0.118 4.118
17 C -0.094 4.094
18 C -0.139 4.139
19 C -0.123 4.123
20 C -0.087 4.087
21 H 0.042 0.958
22 H 0.045 0.955
23 H 0.051 0.949
24 H 0.294 0.706
25 H 0.065 0.935
26 H 0.073 0.927
27 H 0.090 0.910
28 H 0.125 0.875
29 H 0.072 0.928
30 H 0.067 0.933
31 H 0.076 0.924
32 H 0.139 0.861
33 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.779 -9.943 -1.537 12.132
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.108 4.108
2 C -0.329 4.329
3 C 0.140 3.860
4 C -0.543 4.543
5 H 0.082 0.918
6 C -0.127 4.127
7 N -0.465 5.465
8 Si 0.755 3.245
9 H -0.166 1.166
10 H -0.195 1.195
11 H -0.204 1.204
12 N -0.200 5.200
13 C -0.050 4.050
14 C -0.068 4.068
15 C -0.149 4.149
16 C -0.119 4.119
17 C -0.151 4.151
18 C -0.158 4.158
19 C -0.142 4.142
20 C -0.092 4.092
21 H 0.061 0.939
22 H 0.064 0.936
23 H 0.070 0.930
24 H 0.104 0.896
25 H 0.084 0.916
26 H 0.091 0.909
27 H 0.109 0.891
28 H 0.143 0.857
29 H 0.090 0.910
30 H 0.086 0.914
31 H 0.094 0.906
32 H 0.157 0.843
33 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges 6.874 -9.527 -1.548 11.849
hybrid contribution -0.312 0.530 -0.434 0.753
sum 6.562 -8.997 -1.981 11.311
Atomic orbital electron populations
1.19945 0.91045 1.00025 0.99809 1.19730 0.94876 0.91022 1.27306
1.18062 0.81129 0.93353 0.93416 1.18024 1.18955 0.93428 1.23861
0.91793 1.26105 0.91775 0.94274 1.00535 1.69706 1.13642 1.26130
1.36982 0.86181 0.80253 0.79410 0.78623 1.16593 1.19504 1.20429
1.45048 1.06618 1.04091 1.64243 1.21759 0.86247 0.94380 1.02627
1.18717 0.95964 0.83489 1.08661 1.20026 0.96284 0.91797 1.06826
1.19792 0.95648 0.93049 1.03389 1.20647 0.95014 0.96960 1.02463
1.20616 0.91756 0.99476 1.03944 1.20483 0.99489 0.90656 1.03579
1.18370 0.92675 0.93902 1.04263 0.93906 0.93601 0.93024 0.89563
0.91639 0.90853 0.89131 0.85736 0.90983 0.91395 0.90555 0.84324
0.86419
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.05 -2.38 8.82 71.24 0.63 -1.75 16
2 C -0.32 -16.42 5.21 -18.99 -0.10 -16.52 16
3 C 0.25 12.97 5.39 38.74 0.21 13.18 16
4 C -0.51 -28.17 8.94 23.15 0.21 -27.96 16
5 H 0.06 3.75 7.86 -2.91 -0.02 3.73 16
6 C 0.09 4.80 4.31 85.33 0.37 5.17 16
7 N -0.84 -44.98 13.92 21.87 0.30 -44.68 16
8 Si 0.93 43.25 24.94 68.60 1.71 44.96 16
9 H -0.24 -10.70 6.00 99.48 0.60 -10.10 16
10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16
11 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16
12 N -0.51 -23.90 3.24 -530.00 -1.72 -25.62 16
13 C 0.09 3.31 10.86 127.77 1.39 4.69 16
14 C 0.04 1.60 6.81 39.06 0.27 1.87 16
15 C -0.13 -4.68 9.59 22.37 0.21 -4.47 16
16 C -0.12 -3.75 5.89 -19.76 -0.12 -3.86 16
17 C -0.09 -2.06 9.99 71.24 0.71 -1.35 16
18 C -0.14 -4.58 9.61 22.02 0.21 -4.37 16
19 C -0.12 -4.86 10.07 22.40 0.23 -4.64 16
20 C -0.09 -4.10 6.09 -21.35 -0.13 -4.23 16
21 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16
22 H 0.05 2.21 3.85 -2.39 -0.01 2.20 16
23 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16
24 H 0.29 14.21 8.29 -92.71 -0.77 13.44 16
25 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16
26 H 0.07 2.70 7.60 -2.39 -0.02 2.69 16
27 H 0.09 2.66 8.12 -2.39 -0.02 2.64 16
28 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16
29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16
30 H 0.07 1.33 8.08 -2.39 -0.02 1.32 16
31 H 0.08 1.41 8.08 -2.38 -0.02 1.39 16
32 H 0.14 3.57 8.06 -2.92 -0.02 3.55 16
33 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16
Total: -1.00 -62.49 272.51 5.37 -57.13
By element:
Atomic # 1 Polarization: 11.46 SS G_CDS: 0.99 Total: 12.45 kcal
Atomic # 6 Polarization: -48.32 SS G_CDS: 4.08 Total: -44.24 kcal
Atomic # 7 Polarization: -68.88 SS G_CDS: -1.41 Total: -70.30 kcal
Atomic # 14 Polarization: 43.25 SS G_CDS: 1.71 Total: 44.96 kcal
Total: -62.49 5.37 -57.13 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260811775.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.717 kcal
(2) G-P(sol) polarization free energy of solvation -62.491 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.226 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.125 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.592 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds