Wall clock time and date at job start Mon Mar 30 2020 02:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39128 * 126.25063 * 2 1 4 4 C 1.39916 * 125.69523 * 359.97438 * 3 2 1 5 5 H 1.07999 * 120.00289 * 134.84595 * 4 3 2 6 6 C 1.40188 * 120.00035 * 314.84316 * 4 3 2 7 7 N 1.30751 * 119.99996 * 152.22977 * 6 4 3 8 8 Si 1.86796 * 120.00044 * 332.22281 * 6 4 3 9 9 H 1.48492 * 109.47203 * 95.39539 * 8 6 4 10 10 H 1.48505 * 109.47425 * 215.39733 * 8 6 4 11 11 H 1.48503 * 109.47345 * 335.39533 * 8 6 4 12 12 N 1.38316 * 108.60789 * 179.97438 * 3 2 1 13 13 C 1.46499 * 125.60369 * 180.26074 * 12 3 2 14 14 C 1.38048 * 108.79491 * 359.97438 * 12 3 2 15 15 C 1.38930 * 132.79535 * 180.02562 * 14 12 3 16 16 C 1.37957 * 119.89194 * 179.97438 * 15 14 12 17 17 C 1.50707 * 119.65089 * 179.97438 * 16 15 14 18 18 C 1.38942 * 120.70226 * 359.97438 * 16 15 14 19 19 C 1.36433 * 120.58941 * 0.03340 * 18 16 15 20 20 C 1.40482 * 119.80527 * 359.97438 * 19 18 16 21 21 H 1.08992 * 109.47484 * 263.74912 * 1 2 3 22 22 H 1.09001 * 109.47205 * 23.75260 * 1 2 3 23 23 H 1.09006 * 109.46728 * 143.74887 * 1 2 3 24 24 H 0.96995 * 120.00055 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.47129 * 269.69305 * 13 12 3 26 26 H 1.09001 * 109.46785 * 29.69301 * 13 12 3 27 27 H 1.08997 * 109.46949 * 149.69588 * 13 12 3 28 28 H 1.07997 * 120.05436 * 359.97328 * 15 14 12 29 29 H 1.08991 * 109.47389 * 269.98799 * 17 16 15 30 30 H 1.09001 * 109.46992 * 29.99177 * 17 16 15 31 31 H 1.09004 * 109.47135 * 149.98568 * 17 16 15 32 32 H 1.07991 * 119.70676 * 180.02562 * 18 16 15 33 33 H 1.08005 * 120.09822 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3297 1.1220 0.0000 4 6 1.8961 2.4522 -0.0005 5 1 2.3556 3.1703 0.6626 6 6 0.8652 2.8531 -0.8618 7 7 0.0955 3.8588 -0.5365 8 14 0.5913 1.9507 -2.4742 9 1 -0.4568 0.9151 -2.2901 10 1 0.1554 2.9168 -3.5144 11 1 1.8578 1.3028 -2.9003 12 7 3.6478 0.7028 0.0006 13 6 4.8216 1.5794 0.0062 14 6 3.6756 -0.6774 0.0015 15 6 4.7138 -1.6006 0.0029 16 6 4.4328 -2.9513 0.0041 17 6 5.5633 -3.9480 0.0050 18 6 3.1187 -3.4025 0.0046 19 6 2.0807 -2.5172 0.0032 20 6 2.3404 -1.1366 0.0017 21 1 -0.3634 -0.1119 1.0215 22 1 -0.3634 0.9406 -0.4139 23 1 -0.3633 -0.8288 -0.6077 24 1 -0.6180 4.1359 -1.1323 25 1 5.1178 1.7966 -1.0201 26 1 4.5776 2.5099 0.5186 27 1 5.6427 1.0838 0.5242 28 1 5.7391 -1.2615 0.0029 29 1 5.8356 -4.1894 -1.0224 30 1 6.4245 -3.5201 0.5183 31 1 5.2473 -4.8553 0.5199 32 1 2.9172 -4.4634 0.0061 33 1 1.0622 -2.8767 0.0032 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260811775.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:49 Heat of formation + Delta-G solvation = 24.592240 kcal Electronic energy + Delta-G solvation = -15708.339605 eV Core-core repulsion = 13312.001144 eV Total energy + Delta-G solvation = -2396.338461 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.82287 -38.15876 -35.57082 -34.43670 -32.18856 -31.11841 -29.59314 -28.69424 -26.39657 -24.61237 -22.82800 -21.18507 -20.53983 -18.80137 -17.41256 -17.06370 -16.54320 -15.95255 -15.45797 -14.94187 -14.69324 -14.52197 -14.30694 -14.18930 -13.68006 -13.53114 -13.33281 -12.94742 -12.82115 -12.73486 -12.51856 -12.18233 -12.15682 -11.68368 -11.48483 -11.31683 -10.95917 -10.06026 -8.88082 -8.76913 -8.13208 -6.43443 0.43393 0.98129 1.26644 1.30203 1.41787 1.92954 2.15939 2.31839 2.94550 3.23321 4.03332 4.09851 4.25371 4.43635 4.50579 4.59975 4.62732 4.67149 4.77660 4.86272 4.98351 5.00257 5.00994 5.05402 5.19525 5.25889 5.33504 5.49839 5.52903 5.81342 5.92453 6.00331 6.19036 6.32873 6.45508 6.68068 6.88418 7.10608 8.21259 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.034929 B = 0.009416 C = 0.008298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.422670 B = 2972.814720 C = 3373.487925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.324 4.324 3 C 0.247 3.753 4 C -0.509 4.509 5 H 0.064 0.936 6 C 0.090 3.910 7 N -0.838 5.838 8 Si 0.932 3.068 9 H -0.242 1.242 10 H -0.270 1.270 11 H -0.279 1.279 12 N -0.514 5.514 13 C 0.091 3.909 14 C 0.036 3.964 15 C -0.128 4.128 16 C -0.118 4.118 17 C -0.094 4.094 18 C -0.139 4.139 19 C -0.123 4.123 20 C -0.087 4.087 21 H 0.042 0.958 22 H 0.045 0.955 23 H 0.051 0.949 24 H 0.294 0.706 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.125 0.875 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.139 0.861 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.779 -9.943 -1.537 12.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.329 4.329 3 C 0.140 3.860 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.127 4.127 7 N -0.465 5.465 8 Si 0.755 3.245 9 H -0.166 1.166 10 H -0.195 1.195 11 H -0.204 1.204 12 N -0.200 5.200 13 C -0.050 4.050 14 C -0.068 4.068 15 C -0.149 4.149 16 C -0.119 4.119 17 C -0.151 4.151 18 C -0.158 4.158 19 C -0.142 4.142 20 C -0.092 4.092 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.104 0.896 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.143 0.857 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.157 0.843 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.874 -9.527 -1.548 11.849 hybrid contribution -0.312 0.530 -0.434 0.753 sum 6.562 -8.997 -1.981 11.311 Atomic orbital electron populations 1.19945 0.91045 1.00025 0.99809 1.19730 0.94876 0.91022 1.27306 1.18062 0.81129 0.93353 0.93416 1.18024 1.18955 0.93428 1.23861 0.91793 1.26105 0.91775 0.94274 1.00535 1.69706 1.13642 1.26130 1.36982 0.86181 0.80253 0.79410 0.78623 1.16593 1.19504 1.20429 1.45048 1.06618 1.04091 1.64243 1.21759 0.86247 0.94380 1.02627 1.18717 0.95964 0.83489 1.08661 1.20026 0.96284 0.91797 1.06826 1.19792 0.95648 0.93049 1.03389 1.20647 0.95014 0.96960 1.02463 1.20616 0.91756 0.99476 1.03944 1.20483 0.99489 0.90656 1.03579 1.18370 0.92675 0.93902 1.04263 0.93906 0.93601 0.93024 0.89563 0.91639 0.90853 0.89131 0.85736 0.90983 0.91395 0.90555 0.84324 0.86419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -2.38 8.82 71.24 0.63 -1.75 16 2 C -0.32 -16.42 5.21 -18.99 -0.10 -16.52 16 3 C 0.25 12.97 5.39 38.74 0.21 13.18 16 4 C -0.51 -28.17 8.94 23.15 0.21 -27.96 16 5 H 0.06 3.75 7.86 -2.91 -0.02 3.73 16 6 C 0.09 4.80 4.31 85.33 0.37 5.17 16 7 N -0.84 -44.98 13.92 21.87 0.30 -44.68 16 8 Si 0.93 43.25 24.94 68.60 1.71 44.96 16 9 H -0.24 -10.70 6.00 99.48 0.60 -10.10 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 12 N -0.51 -23.90 3.24 -530.00 -1.72 -25.62 16 13 C 0.09 3.31 10.86 127.77 1.39 4.69 16 14 C 0.04 1.60 6.81 39.06 0.27 1.87 16 15 C -0.13 -4.68 9.59 22.37 0.21 -4.47 16 16 C -0.12 -3.75 5.89 -19.76 -0.12 -3.86 16 17 C -0.09 -2.06 9.99 71.24 0.71 -1.35 16 18 C -0.14 -4.58 9.61 22.02 0.21 -4.37 16 19 C -0.12 -4.86 10.07 22.40 0.23 -4.64 16 20 C -0.09 -4.10 6.09 -21.35 -0.13 -4.23 16 21 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.05 2.21 3.85 -2.39 -0.01 2.20 16 23 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 24 H 0.29 14.21 8.29 -92.71 -0.77 13.44 16 25 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 26 H 0.07 2.70 7.60 -2.39 -0.02 2.69 16 27 H 0.09 2.66 8.12 -2.39 -0.02 2.64 16 28 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.33 8.08 -2.39 -0.02 1.32 16 31 H 0.08 1.41 8.08 -2.38 -0.02 1.39 16 32 H 0.14 3.57 8.06 -2.92 -0.02 3.55 16 33 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -62.49 272.51 5.37 -57.13 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.99 Total: 12.45 kcal Atomic # 6 Polarization: -48.32 SS G_CDS: 4.08 Total: -44.24 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: -1.41 Total: -70.30 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.71 Total: 44.96 kcal Total: -62.49 5.37 -57.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260811775.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.717 kcal (2) G-P(sol) polarization free energy of solvation -62.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds