Wall clock time and date at job start Mon Mar 30 2020 02:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47179 * 2 1 4 4 C 1.38944 * 119.70096 * 89.99683 * 3 2 1 5 5 C 1.37960 * 120.69725 * 180.02562 * 4 3 2 6 6 C 1.38939 * 119.89423 * 0.02562 * 5 4 3 7 7 C 1.41185 * 119.37569 * 0.02562 * 6 5 4 8 8 C 1.40937 * 107.27710 * 179.97438 * 7 6 5 9 9 C 1.39130 * 107.49458 * 359.97438 * 8 7 6 10 10 C 1.39916 * 125.69702 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99878 * 179.97438 * 10 9 8 12 12 C 1.40180 * 120.00186 * 359.95469 * 10 9 8 13 13 N 1.30753 * 120.00078 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00099 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47781 * 90.00013 * 14 12 10 16 16 H 1.48511 * 109.47195 * 209.99944 * 14 12 10 17 17 H 1.48499 * 109.46997 * 329.99631 * 14 12 10 18 18 N 1.38041 * 132.79812 * 179.97438 * 6 5 4 19 19 C 1.46498 * 125.59962 * 0.03590 * 18 6 5 20 20 C 1.36427 * 119.70546 * 270.21723 * 3 2 1 21 21 H 1.08999 * 109.47430 * 59.99993 * 1 2 3 22 22 H 1.08998 * 109.47113 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47626 * 299.99743 * 1 2 3 24 24 H 1.09001 * 109.47185 * 240.00413 * 2 1 3 25 25 H 1.08999 * 109.47430 * 120.00007 * 2 1 3 26 26 H 1.08000 * 119.64977 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.05178 * 180.02562 * 5 4 3 28 28 H 1.08002 * 126.25556 * 180.02562 * 8 7 6 29 29 H 0.96998 * 120.00300 * 179.97438 * 13 12 10 30 30 H 1.08994 * 109.47097 * 90.00264 * 19 18 6 31 31 H 1.08999 * 109.46687 * 210.00001 * 19 18 6 32 32 H 1.08994 * 109.47341 * 329.99837 * 19 18 6 33 33 H 1.08007 * 120.09813 * 359.78584 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2617 2.0699 1.2069 5 6 2.7210 3.3706 1.2309 6 6 2.9579 4.0435 0.0386 7 6 2.7235 3.3836 -1.1874 8 6 3.0424 4.2901 -2.2183 9 6 3.4606 5.4743 -1.6195 10 6 3.8675 6.6308 -2.2937 11 1 4.1749 7.5021 -1.7343 12 6 3.8765 6.6585 -3.6952 13 7 3.5043 5.6038 -4.3724 14 14 4.4204 8.2023 -4.5953 15 1 5.8849 8.1460 -4.8346 16 1 3.7096 8.2934 -5.8960 17 1 4.0990 9.3951 -3.7711 18 7 3.4070 5.3173 -0.2462 19 6 3.7674 6.3356 0.7433 20 6 2.2534 2.0597 -1.1850 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.0778 1.5510 2.1360 27 1 2.8962 3.8650 2.1750 28 1 2.9739 4.1006 -3.2794 29 1 3.5102 5.6231 -5.3422 30 1 4.8258 6.2463 0.9877 31 1 3.5716 7.3263 0.3330 32 1 3.1728 6.1921 1.6455 33 1 2.0723 1.5476 -2.1185 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260881274.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:58 Heat of formation + Delta-G solvation = 33.219437 kcal Electronic energy + Delta-G solvation = -15282.241424 eV Core-core repulsion = 12886.277067 eV Total energy + Delta-G solvation = -2395.964357 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.74855 -36.63968 -33.84477 -32.50798 -31.31422 -28.52377 -28.36165 -25.59527 -24.68580 -22.60222 -21.02409 -19.25651 -19.15271 -16.93079 -15.71076 -15.49024 -14.42652 -14.29286 -14.08117 -13.53217 -13.02767 -12.80287 -12.48389 -12.35058 -11.89581 -11.78176 -11.60098 -11.37782 -11.27818 -11.02216 -10.66134 -10.54145 -10.26071 -10.05001 -9.76815 -9.53685 -9.27152 -8.32027 -6.99468 -6.70509 -6.30989 -4.37028 2.36946 2.78538 2.98890 3.00221 3.03937 3.79043 4.09371 4.24828 5.02480 5.36091 5.50083 5.51048 5.65505 5.85789 5.90198 6.00193 6.09452 6.13580 6.16893 6.24500 6.33434 6.53918 6.62140 6.86280 6.88651 6.97713 7.08403 7.34214 7.63983 7.67634 7.82370 7.91766 8.03649 8.35285 8.68495 8.77256 8.98042 9.17381 10.13243 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.038239 B = 0.007069 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.052055 B = 3959.898807 C = 4592.914567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C -0.105 4.105 4 C -0.175 4.175 5 C -0.116 4.116 6 C 0.036 3.964 7 C -0.043 4.043 8 C -0.325 4.325 9 C 0.261 3.739 10 C -0.442 4.442 11 H 0.076 0.924 12 C 0.072 3.928 13 N -0.778 5.778 14 Si 0.927 3.073 15 H -0.268 1.268 16 H -0.275 1.275 17 H -0.263 1.263 18 N -0.519 5.519 19 C 0.099 3.901 20 C -0.130 4.130 21 H 0.054 0.946 22 H 0.045 0.955 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.165 0.835 29 H 0.280 0.720 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.295 -1.981 4.545 5.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C -0.107 4.107 4 C -0.194 4.194 5 C -0.137 4.137 6 C -0.066 4.066 7 C -0.048 4.048 8 C -0.348 4.348 9 C 0.157 3.843 10 C -0.474 4.474 11 H 0.094 0.906 12 C -0.148 4.148 13 N -0.403 5.403 14 Si 0.751 3.249 15 H -0.193 1.193 16 H -0.199 1.199 17 H -0.187 1.187 18 N -0.209 5.209 19 C -0.044 4.044 20 C -0.149 4.149 21 H 0.073 0.927 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.182 0.818 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.248 -1.827 4.501 5.016 hybrid contribution 0.293 0.786 -0.238 0.872 sum -0.955 -1.040 4.264 4.492 Atomic orbital electron populations 1.21736 0.95938 1.00297 1.02064 1.20360 0.95271 0.94198 1.01195 1.18940 1.03352 0.95154 0.93246 1.20052 1.08625 0.94650 0.96061 1.19683 1.05075 0.94981 0.93985 1.18224 1.06994 0.86295 0.95128 1.18510 0.99309 0.93508 0.93440 1.21776 1.21582 0.92635 0.98828 1.18180 0.92900 0.95028 0.78194 1.18680 1.39780 0.97710 0.91278 0.90592 1.25783 0.93534 0.97929 0.97521 1.69713 1.33626 1.28299 1.08683 0.86010 0.79337 0.80780 0.78789 1.19344 1.19946 1.18702 1.44141 1.60728 1.10190 1.05881 1.21457 0.99411 0.92006 0.91515 1.19962 1.04844 0.93909 0.96148 0.92692 0.93571 0.92960 0.92183 0.92393 0.88340 0.88846 0.81834 0.90807 0.93415 0.90927 0.92232 0.88172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.89 37.15 0.37 -1.68 16 2 C -0.07 -1.16 6.04 -27.88 -0.17 -1.33 16 3 C -0.11 -2.13 5.10 -105.01 -0.54 -2.67 16 4 C -0.17 -3.50 9.67 -39.42 -0.38 -3.89 16 5 C -0.12 -2.49 9.96 -39.42 -0.39 -2.88 16 6 C 0.04 0.89 6.81 -83.69 -0.57 0.32 16 7 C -0.04 -1.11 6.14 -106.91 -0.66 -1.76 16 8 C -0.33 -9.05 9.80 -38.23 -0.37 -9.42 16 9 C 0.26 7.05 6.65 -83.98 -0.56 6.49 16 10 C -0.44 -11.36 8.96 -38.22 -0.34 -11.70 16 11 H 0.08 1.81 7.06 -52.48 -0.37 1.44 16 12 C 0.07 1.75 5.50 -17.28 -0.10 1.65 16 13 N -0.78 -19.78 10.18 55.56 0.57 -19.22 16 14 Si 0.93 18.08 29.56 -169.99 -5.03 13.05 16 15 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 16 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 17 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 18 N -0.52 -12.61 3.24 -118.88 -0.39 -13.00 16 19 C 0.10 1.87 10.81 59.85 0.65 2.52 16 20 C -0.13 -2.97 9.70 -39.39 -0.38 -3.36 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 25 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 26 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 28 H 0.16 4.70 5.58 -52.49 -0.29 4.41 16 29 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.30 7.26 -51.93 -0.38 0.92 16 32 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 33 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 LS Contribution 278.53 15.07 4.20 4.20 Total: -1.00 -28.48 278.53 -8.48 -36.96 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -4.39 Total: 5.71 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -3.44 Total: -27.70 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: 0.18 Total: -32.21 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.48 -8.48 -36.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260881274.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.179 kcal (2) G-P(sol) polarization free energy of solvation -28.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds