Wall clock time and date at job start Mon Mar 30 2020 02:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47179 * 2 1 4 4 C 1.38944 * 119.70096 * 89.99683 * 3 2 1 5 5 C 1.37960 * 120.69725 * 180.02562 * 4 3 2 6 6 C 1.38939 * 119.89423 * 0.02562 * 5 4 3 7 7 C 1.41185 * 119.37569 * 0.02562 * 6 5 4 8 8 C 1.40937 * 107.27710 * 179.97438 * 7 6 5 9 9 C 1.39130 * 107.49458 * 359.97438 * 8 7 6 10 10 C 1.39916 * 125.69702 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99878 * 179.97438 * 10 9 8 12 12 C 1.40180 * 120.00186 * 359.95469 * 10 9 8 13 13 N 1.30753 * 120.00078 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00099 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47781 * 90.00013 * 14 12 10 16 16 H 1.48511 * 109.47195 * 209.99944 * 14 12 10 17 17 H 1.48499 * 109.46997 * 329.99631 * 14 12 10 18 18 N 1.38041 * 132.79812 * 179.97438 * 6 5 4 19 19 C 1.46498 * 125.59962 * 0.03590 * 18 6 5 20 20 C 1.36427 * 119.70546 * 270.21723 * 3 2 1 21 21 H 1.08999 * 109.47430 * 59.99993 * 1 2 3 22 22 H 1.08998 * 109.47113 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47626 * 299.99743 * 1 2 3 24 24 H 1.09001 * 109.47185 * 240.00413 * 2 1 3 25 25 H 1.08999 * 109.47430 * 120.00007 * 2 1 3 26 26 H 1.08000 * 119.64977 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.05178 * 180.02562 * 5 4 3 28 28 H 1.08002 * 126.25556 * 180.02562 * 8 7 6 29 29 H 0.96998 * 120.00300 * 179.97438 * 13 12 10 30 30 H 1.08994 * 109.47097 * 90.00264 * 19 18 6 31 31 H 1.08999 * 109.46687 * 210.00001 * 19 18 6 32 32 H 1.08994 * 109.47341 * 329.99837 * 19 18 6 33 33 H 1.08007 * 120.09813 * 359.78584 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2617 2.0699 1.2069 5 6 2.7210 3.3706 1.2309 6 6 2.9579 4.0435 0.0386 7 6 2.7235 3.3836 -1.1874 8 6 3.0424 4.2901 -2.2183 9 6 3.4606 5.4743 -1.6195 10 6 3.8675 6.6308 -2.2937 11 1 4.1749 7.5021 -1.7343 12 6 3.8765 6.6585 -3.6952 13 7 3.5043 5.6038 -4.3724 14 14 4.4204 8.2023 -4.5953 15 1 5.8849 8.1460 -4.8346 16 1 3.7096 8.2934 -5.8960 17 1 4.0990 9.3951 -3.7711 18 7 3.4070 5.3173 -0.2462 19 6 3.7674 6.3356 0.7433 20 6 2.2534 2.0597 -1.1850 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.0778 1.5510 2.1360 27 1 2.8962 3.8650 2.1750 28 1 2.9739 4.1006 -3.2794 29 1 3.5102 5.6231 -5.3422 30 1 4.8258 6.2463 0.9877 31 1 3.5716 7.3263 0.3330 32 1 3.1728 6.1921 1.6455 33 1 2.0723 1.5476 -2.1185 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260881274.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:58 Heat of formation + Delta-G solvation = 19.115716 kcal Electronic energy + Delta-G solvation = -15282.853008 eV Core-core repulsion = 12886.277067 eV Total energy + Delta-G solvation = -2396.575940 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.53538 -38.28899 -35.65731 -33.98553 -33.05535 -30.21360 -30.07772 -27.25784 -26.43730 -24.03564 -22.75302 -21.05168 -20.86184 -18.77728 -17.49557 -17.20504 -15.96373 -15.84094 -15.75180 -14.96707 -14.71791 -14.24689 -14.12164 -13.92205 -13.52651 -13.37370 -13.15104 -12.97833 -12.78507 -12.68509 -12.26108 -11.87509 -11.81130 -11.70747 -11.48381 -11.25332 -11.00043 -10.12687 -8.82193 -8.52701 -8.12637 -6.32427 0.60934 1.07762 1.39131 1.43286 1.54976 2.15160 2.25453 2.54788 3.23808 3.46768 4.10705 4.14023 4.19844 4.39909 4.51581 4.54461 4.66603 4.67577 4.78960 4.89554 4.97250 5.09934 5.12547 5.19264 5.26878 5.36761 5.47092 5.58731 5.83004 5.87413 6.05314 6.10757 6.21489 6.52569 6.77096 6.85184 7.11522 7.28284 8.34220 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.038239 B = 0.007069 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.052055 B = 3959.898807 C = 4592.914567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 C -0.100 4.100 4 C -0.163 4.163 5 C -0.119 4.119 6 C 0.015 3.985 7 C -0.081 4.081 8 C -0.373 4.373 9 C 0.237 3.763 10 C -0.470 4.470 11 H 0.088 0.912 12 C 0.025 3.975 13 N -0.814 5.814 14 Si 1.006 2.994 15 H -0.262 1.262 16 H -0.268 1.268 17 H -0.253 1.253 18 N -0.526 5.526 19 C 0.093 3.907 20 C -0.150 4.150 21 H 0.038 0.962 22 H 0.075 0.925 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.140 0.860 27 H 0.125 0.875 28 H 0.141 0.859 29 H 0.287 0.713 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.440 -2.257 6.580 7.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 C -0.102 4.102 4 C -0.182 4.182 5 C -0.140 4.140 6 C -0.088 4.088 7 C -0.086 4.086 8 C -0.396 4.396 9 C 0.131 3.869 10 C -0.503 4.503 11 H 0.106 0.894 12 C -0.190 4.190 13 N -0.440 5.440 14 Si 0.825 3.175 15 H -0.186 1.186 16 H -0.193 1.193 17 H -0.176 1.176 18 N -0.217 5.217 19 C -0.048 4.048 20 C -0.169 4.169 21 H 0.057 0.943 22 H 0.094 0.906 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.157 0.843 27 H 0.143 0.857 28 H 0.158 0.842 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.399 -2.116 6.575 7.047 hybrid contribution 0.279 0.687 -0.757 1.060 sum -1.120 -1.429 5.818 6.094 Atomic orbital electron populations 1.21704 0.94499 1.02095 1.01395 1.20448 0.96393 0.91359 1.02719 1.19446 1.01331 0.97154 0.92234 1.20617 1.05906 0.94119 0.97524 1.20109 1.04311 0.95565 0.94047 1.18638 1.07703 0.86719 0.95747 1.18834 1.00916 0.94890 0.93940 1.21728 1.24718 0.94638 0.98493 1.18483 0.93360 0.95227 0.79852 1.19066 1.40910 0.97915 0.92385 0.89409 1.26899 0.92873 1.01336 0.97928 1.69846 1.34337 1.30551 1.09279 0.84844 0.78936 0.76312 0.77369 1.18626 1.19251 1.17645 1.44366 1.60507 1.11080 1.05733 1.21735 1.00743 0.91007 0.91297 1.20179 1.05750 0.93344 0.97637 0.94327 0.90587 0.92706 0.91783 0.89811 0.84268 0.85744 0.84192 0.90219 0.92023 0.90425 0.89584 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.89 71.98 0.71 -2.86 16 2 C -0.07 -2.07 6.04 29.85 0.18 -1.89 16 3 C -0.10 -3.87 5.10 -20.12 -0.10 -3.97 16 4 C -0.16 -5.99 9.67 22.37 0.22 -5.77 16 5 C -0.12 -4.85 9.96 22.37 0.22 -4.63 16 6 C 0.01 0.73 6.81 39.06 0.27 0.99 16 7 C -0.08 -4.39 6.14 -21.35 -0.13 -4.52 16 8 C -0.37 -22.18 9.80 23.15 0.23 -21.95 16 9 C 0.24 13.36 6.65 38.74 0.26 13.62 16 10 C -0.47 -25.02 8.96 23.15 0.21 -24.82 16 11 H 0.09 4.26 7.06 -2.91 -0.02 4.24 16 12 C 0.03 1.27 5.50 85.33 0.47 1.74 16 13 N -0.81 -43.68 10.18 21.87 0.22 -43.46 16 14 Si 1.01 37.40 29.56 68.60 2.03 39.43 16 15 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 16 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 17 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 18 N -0.53 -26.01 3.24 -530.02 -1.72 -27.72 16 19 C 0.09 3.43 10.81 127.77 1.38 4.81 16 20 C -0.15 -7.05 9.70 22.39 0.22 -6.84 16 21 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 24 H 0.06 1.80 8.08 -2.39 -0.02 1.79 16 25 H 0.08 2.02 8.08 -2.39 -0.02 2.00 16 26 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 27 H 0.12 4.23 8.06 -2.91 -0.02 4.20 16 28 H 0.14 8.79 5.58 -2.91 -0.02 8.78 16 29 H 0.29 13.81 8.29 -92.71 -0.77 13.04 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 31 H 0.08 2.73 7.26 -2.39 -0.02 2.71 16 32 H 0.09 2.65 8.11 -2.39 -0.02 2.63 16 33 H 0.10 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -65.53 278.53 5.75 -59.79 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 1.09 Total: 28.05 kcal Atomic # 6 Polarization: -60.20 SS G_CDS: 4.12 Total: -56.08 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: -1.50 Total: -71.18 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.43 kcal Total: -65.53 5.75 -59.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260881274.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.901 kcal (2) G-P(sol) polarization free energy of solvation -65.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds