Wall clock time and date at job start Mon Mar 30 2020 02:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47124 * 2 1 4 4 C 1.34917 * 125.23788 * 85.02385 * 3 2 1 5 5 C 1.41062 * 107.79642 * 179.97438 * 4 3 2 6 6 C 1.40562 * 106.89381 * 359.97438 * 5 4 3 7 7 C 1.38972 * 119.64259 * 180.02562 * 6 5 4 8 8 C 1.38403 * 121.04464 * 359.71126 * 7 6 5 9 9 C 1.37642 * 121.57680 * 0.56241 * 8 7 6 10 10 C 1.40834 * 120.03831 * 359.46094 * 9 8 7 11 11 C 1.40593 * 120.71416 * 180.23716 * 10 9 8 12 12 H 1.08006 * 120.00030 * 204.16812 * 11 10 9 13 13 C 1.40022 * 120.00296 * 24.16589 * 11 10 9 14 14 N 1.30818 * 120.00260 * 17.70707 * 13 11 10 15 15 Si 1.86807 * 120.00149 * 197.70847 * 13 11 10 16 16 H 1.48499 * 109.46806 * 90.00005 * 15 13 11 17 17 H 1.48501 * 109.46803 * 210.00034 * 15 13 11 18 18 H 1.48496 * 109.47103 * 330.00121 * 15 13 11 19 19 N 1.36550 * 125.23879 * 264.99840 * 3 2 1 20 20 C 1.46495 * 125.56922 * 0.05660 * 19 3 2 21 21 H 1.08999 * 109.47126 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47134 * 300.00394 * 1 2 3 23 23 H 1.09006 * 109.47083 * 60.00008 * 1 2 3 24 24 H 1.08995 * 109.47299 * 240.00374 * 2 1 3 25 25 H 1.09002 * 109.46771 * 119.99308 * 2 1 3 26 26 H 1.07998 * 126.10568 * 359.97438 * 4 3 2 27 27 H 1.07993 * 119.47605 * 179.97438 * 7 6 5 28 28 H 1.07995 * 119.21403 * 180.26944 * 8 7 6 29 29 H 1.07995 * 119.97819 * 179.73676 * 9 8 7 30 30 H 0.96999 * 120.00977 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.47262 * 90.00114 * 20 19 3 32 32 H 1.09001 * 109.46930 * 210.00112 * 20 19 3 33 33 H 1.09004 * 109.47416 * 329.99728 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2017 2.1866 1.0978 5 6 2.6854 3.4430 0.6766 6 6 2.7968 3.3894 -0.7235 7 6 3.2556 4.5012 -1.4196 8 6 3.6002 5.6662 -0.7566 9 6 3.5145 5.7682 0.6133 10 6 3.0568 4.6752 1.3743 11 6 2.9589 4.7654 2.7740 12 1 2.9935 3.8698 3.3766 13 6 2.8165 6.0164 3.3867 14 7 2.4307 7.0494 2.6828 15 14 3.1775 6.2103 5.2092 16 1 4.6089 6.5588 5.3959 17 1 2.3276 7.2913 5.7698 18 1 2.8830 4.9350 5.9106 19 7 2.3866 2.1312 -1.1110 20 6 2.3387 1.6374 -2.4894 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5137 0.8901 26 1 2.0025 1.8906 2.1171 27 1 3.3405 4.4569 -2.4953 28 1 3.9492 6.5140 -1.3274 29 1 3.7942 6.6884 1.1045 30 1 2.3316 7.9159 3.1073 31 1 1.3619 1.8570 -2.9203 32 1 3.1141 2.1277 -3.0781 33 1 2.5047 0.5601 -2.4954 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261048119.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:44 Heat of formation + Delta-G solvation = 41.542529 kcal Electronic energy + Delta-G solvation = -15414.415369 eV Core-core repulsion = 13018.811928 eV Total energy + Delta-G solvation = -2395.603441 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.11832 -35.91912 -33.66978 -32.66952 -31.66741 -29.23911 -27.19369 -25.37474 -24.93247 -23.07577 -20.37711 -19.77098 -18.74417 -16.97678 -15.70332 -15.20415 -14.82365 -14.50592 -13.95193 -13.62560 -13.04309 -12.78074 -12.56864 -12.32030 -12.03060 -11.76255 -11.55342 -11.37950 -11.10775 -10.87766 -10.86208 -10.61361 -10.40673 -9.78769 -9.68754 -9.30249 -9.13998 -8.11136 -6.87703 -6.70052 -6.45130 -4.20153 2.51758 3.01873 3.07125 3.10203 3.41776 3.81483 3.91123 3.93869 4.66081 5.27760 5.31986 5.35265 5.56881 5.73189 5.80086 5.83651 5.98676 6.03203 6.13953 6.29283 6.46992 6.51898 6.71644 6.78344 7.02909 7.16897 7.24921 7.46871 7.50641 7.87306 8.14609 8.22606 8.28795 8.33310 8.59287 8.76194 8.90345 9.08162 10.11783 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.029152 B = 0.008320 C = 0.006753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.267717 B = 3364.571927 C = 4145.288620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C -0.012 4.012 4 C -0.152 4.152 5 C -0.187 4.187 6 C 0.130 3.870 7 C -0.285 4.285 8 C -0.052 4.052 9 C -0.232 4.232 10 C 0.158 3.842 11 C -0.435 4.435 12 H 0.081 0.919 13 C 0.074 3.926 14 N -0.774 5.774 15 Si 0.911 3.089 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.260 1.260 19 N -0.486 5.486 20 C 0.091 3.909 21 H 0.049 0.951 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.122 0.878 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.282 0.718 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.187 -7.578 -3.212 8.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 C -0.116 4.116 4 C -0.178 4.178 5 C -0.190 4.190 6 C 0.024 3.976 7 C -0.308 4.308 8 C -0.072 4.072 9 C -0.253 4.253 10 C 0.154 3.846 11 C -0.463 4.463 12 H 0.099 0.901 13 C -0.146 4.146 14 N -0.398 5.398 15 Si 0.735 3.265 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.184 1.184 19 N -0.171 5.171 20 C -0.052 4.052 21 H 0.069 0.931 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.140 0.860 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.134 0.866 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.294 -7.481 -3.494 8.357 hybrid contribution 0.052 0.256 0.572 0.629 sum -1.242 -7.224 -2.923 7.891 Atomic orbital electron populations 1.21759 0.95487 1.00572 1.02349 1.19916 0.95376 0.91252 1.01786 1.19790 1.11023 0.94677 0.86140 1.20113 1.07526 0.93834 0.96284 1.19210 1.12113 0.96243 0.91479 1.18045 1.00636 0.84959 0.93932 1.18949 1.21690 0.93864 0.96256 1.20232 0.97602 0.94546 0.94802 1.20891 1.11497 1.00704 0.92201 1.18087 0.85736 0.88451 0.92322 1.19526 1.41277 0.93237 0.92261 0.90083 1.26029 0.92269 0.95374 1.00971 1.69867 1.30024 1.01437 1.38451 0.86267 0.79412 0.79111 0.81742 1.19104 1.20207 1.18415 1.43411 1.57758 1.11362 1.04599 1.21589 1.01742 0.99463 0.82414 0.93146 0.92173 0.93212 0.92449 0.90726 0.86012 0.90397 0.89561 0.86571 0.90661 0.92857 0.91094 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.89 37.16 0.37 -1.58 16 2 C -0.05 -0.67 6.17 -27.88 -0.17 -0.85 16 3 C -0.01 -0.24 6.11 -81.67 -0.50 -0.74 16 4 C -0.15 -3.52 10.62 -39.69 -0.42 -3.94 16 5 C -0.19 -4.93 6.21 -104.67 -0.65 -5.58 16 6 C 0.13 3.21 6.82 -83.99 -0.57 2.64 16 7 C -0.28 -6.92 9.96 -39.25 -0.39 -7.31 16 8 C -0.05 -1.30 9.94 -39.74 -0.39 -1.70 16 9 C -0.23 -6.31 8.71 -38.82 -0.34 -6.65 16 10 C 0.16 4.39 5.73 -104.75 -0.60 3.79 16 11 C -0.43 -11.71 9.01 -38.03 -0.34 -12.05 16 12 H 0.08 2.10 7.91 -52.48 -0.42 1.69 16 13 C 0.07 1.85 5.15 -17.32 -0.09 1.76 16 14 N -0.77 -20.05 10.95 55.55 0.61 -19.44 16 15 Si 0.91 18.54 29.60 -169.99 -5.03 13.51 16 16 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 17 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 18 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 19 N -0.49 -10.13 3.19 -117.11 -0.37 -10.50 16 20 C 0.09 1.40 10.86 59.84 0.65 2.05 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.76 6.84 -51.93 -0.36 0.40 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.12 2.65 8.06 -52.49 -0.42 2.22 16 27 H 0.08 1.70 8.06 -52.49 -0.42 1.27 16 28 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 29 H 0.12 3.20 6.16 -52.49 -0.32 2.88 16 30 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.87 6.88 -51.93 -0.36 0.51 16 LS Contribution 279.34 15.07 4.21 4.21 Total: -1.00 -29.69 279.34 -8.43 -38.12 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -4.39 Total: 4.24 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: -3.45 Total: -30.14 kcal Atomic # 7 Polarization: -30.17 SS G_CDS: 0.23 Total: -29.94 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.69 -8.43 -38.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261048119.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.664 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds