Wall clock time and date at job start Mon Mar 30 2020 02:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47124 * 2 1 4 4 C 1.34917 * 125.23788 * 85.02385 * 3 2 1 5 5 C 1.41062 * 107.79642 * 179.97438 * 4 3 2 6 6 C 1.40562 * 106.89381 * 359.97438 * 5 4 3 7 7 C 1.38972 * 119.64259 * 180.02562 * 6 5 4 8 8 C 1.38403 * 121.04464 * 359.71126 * 7 6 5 9 9 C 1.37642 * 121.57680 * 0.56241 * 8 7 6 10 10 C 1.40834 * 120.03831 * 359.46094 * 9 8 7 11 11 C 1.40593 * 120.71416 * 180.23716 * 10 9 8 12 12 H 1.08006 * 120.00030 * 204.16812 * 11 10 9 13 13 C 1.40022 * 120.00296 * 24.16589 * 11 10 9 14 14 N 1.30818 * 120.00260 * 17.70707 * 13 11 10 15 15 Si 1.86807 * 120.00149 * 197.70847 * 13 11 10 16 16 H 1.48499 * 109.46806 * 90.00005 * 15 13 11 17 17 H 1.48501 * 109.46803 * 210.00034 * 15 13 11 18 18 H 1.48496 * 109.47103 * 330.00121 * 15 13 11 19 19 N 1.36550 * 125.23879 * 264.99840 * 3 2 1 20 20 C 1.46495 * 125.56922 * 0.05660 * 19 3 2 21 21 H 1.08999 * 109.47126 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47134 * 300.00394 * 1 2 3 23 23 H 1.09006 * 109.47083 * 60.00008 * 1 2 3 24 24 H 1.08995 * 109.47299 * 240.00374 * 2 1 3 25 25 H 1.09002 * 109.46771 * 119.99308 * 2 1 3 26 26 H 1.07998 * 126.10568 * 359.97438 * 4 3 2 27 27 H 1.07993 * 119.47605 * 179.97438 * 7 6 5 28 28 H 1.07995 * 119.21403 * 180.26944 * 8 7 6 29 29 H 1.07995 * 119.97819 * 179.73676 * 9 8 7 30 30 H 0.96999 * 120.00977 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.47262 * 90.00114 * 20 19 3 32 32 H 1.09001 * 109.46930 * 210.00112 * 20 19 3 33 33 H 1.09004 * 109.47416 * 329.99728 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2017 2.1866 1.0978 5 6 2.6854 3.4430 0.6766 6 6 2.7968 3.3894 -0.7235 7 6 3.2556 4.5012 -1.4196 8 6 3.6002 5.6662 -0.7566 9 6 3.5145 5.7682 0.6133 10 6 3.0568 4.6752 1.3743 11 6 2.9589 4.7654 2.7740 12 1 2.9935 3.8698 3.3766 13 6 2.8165 6.0164 3.3867 14 7 2.4307 7.0494 2.6828 15 14 3.1775 6.2103 5.2092 16 1 4.6089 6.5588 5.3959 17 1 2.3276 7.2913 5.7698 18 1 2.8830 4.9350 5.9106 19 7 2.3866 2.1312 -1.1110 20 6 2.3387 1.6374 -2.4894 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5137 0.8901 26 1 2.0025 1.8906 2.1171 27 1 3.3405 4.4569 -2.4953 28 1 3.9492 6.5140 -1.3274 29 1 3.7942 6.6884 1.1045 30 1 2.3316 7.9159 3.1073 31 1 1.3619 1.8570 -2.9203 32 1 3.1141 2.1277 -3.0781 33 1 2.5047 0.5601 -2.4954 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261048119.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:44 Heat of formation + Delta-G solvation = 26.102467 kcal Electronic energy + Delta-G solvation = -15415.084900 eV Core-core repulsion = 13018.811928 eV Total energy + Delta-G solvation = -2396.272972 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.85145 -37.76162 -35.45038 -34.12555 -33.28109 -31.09409 -28.92100 -26.96121 -26.71548 -24.50530 -22.20755 -21.60943 -20.39133 -18.77837 -17.51565 -16.89845 -16.50631 -16.03330 -15.58396 -15.04707 -14.67384 -14.51988 -13.90465 -13.83200 -13.53049 -13.38885 -13.07703 -12.96904 -12.74351 -12.71765 -12.13755 -12.09902 -11.91864 -11.59388 -11.49376 -11.19543 -11.02248 -9.96373 -8.74918 -8.57722 -8.28870 -6.18730 0.69146 1.29890 1.37708 1.51871 1.57317 2.14222 2.18757 2.25947 2.74669 3.80777 3.97647 4.10217 4.19846 4.40182 4.44371 4.56296 4.63489 4.73277 4.78194 4.86747 4.94728 5.02987 5.09161 5.14977 5.33538 5.39900 5.40720 5.58475 5.64193 5.95886 6.20692 6.31418 6.36683 6.46551 6.77891 6.93223 6.95549 7.12688 8.27956 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.029152 B = 0.008320 C = 0.006753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.267717 B = 3364.571927 C = 4145.288620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C 0.027 3.973 4 C -0.204 4.204 5 C -0.215 4.215 6 C 0.100 3.900 7 C -0.278 4.278 8 C -0.067 4.067 9 C -0.260 4.260 10 C 0.120 3.880 11 C -0.472 4.472 12 H 0.075 0.925 13 C 0.033 3.967 14 N -0.809 5.809 15 Si 0.987 3.013 16 H -0.260 1.260 17 H -0.264 1.264 18 H -0.257 1.257 19 N -0.483 5.483 20 C 0.079 3.921 21 H 0.085 0.915 22 H 0.042 0.958 23 H 0.045 0.955 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.122 0.878 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.291 0.709 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.678 -9.870 -4.191 10.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 C -0.080 4.080 4 C -0.229 4.229 5 C -0.220 4.220 6 C -0.007 4.007 7 C -0.300 4.300 8 C -0.086 4.086 9 C -0.281 4.281 10 C 0.117 3.883 11 C -0.500 4.500 12 H 0.093 0.907 13 C -0.184 4.184 14 N -0.433 5.433 15 Si 0.807 3.193 16 H -0.184 1.184 17 H -0.188 1.188 18 H -0.180 1.180 19 N -0.166 5.166 20 C -0.061 4.061 21 H 0.104 0.896 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.140 0.860 27 H 0.124 0.876 28 H 0.128 0.872 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.787 -9.783 -4.524 10.925 hybrid contribution 0.146 0.791 0.683 1.055 sum -1.642 -8.992 -3.841 9.915 Atomic orbital electron populations 1.21712 0.94037 1.02627 1.01356 1.20152 0.96405 0.87629 1.04078 1.20605 1.06284 0.96228 0.84906 1.20276 1.11011 0.93906 0.97722 1.19682 1.12337 0.96967 0.92966 1.18257 1.01907 0.86912 0.93629 1.19269 1.19847 0.93296 0.97583 1.20501 0.97925 0.95946 0.94254 1.20873 1.13476 1.00395 0.93399 1.18507 0.86822 0.89677 0.93283 1.19706 1.43690 0.94138 0.92448 0.90661 1.26922 0.91244 0.94359 1.05882 1.69913 1.30627 1.02134 1.40675 0.85132 0.79463 0.79342 0.75353 1.18439 1.18786 1.18031 1.43796 1.55937 1.09944 1.06953 1.22015 1.03131 1.01654 0.79304 0.89579 0.93857 0.93615 0.89372 0.89225 0.86010 0.87601 0.87202 0.88174 0.89806 0.91135 0.90302 0.87799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.89 71.98 0.71 -2.53 16 2 C -0.04 -1.15 6.17 29.85 0.18 -0.97 16 3 C 0.03 1.03 6.11 41.06 0.25 1.28 16 4 C -0.20 -9.64 10.62 22.20 0.24 -9.41 16 5 C -0.22 -11.78 6.21 -19.90 -0.12 -11.91 16 6 C 0.10 4.93 6.82 38.93 0.27 5.20 16 7 C -0.28 -13.42 9.96 22.49 0.22 -13.19 16 8 C -0.07 -3.42 9.94 22.17 0.22 -3.19 16 9 C -0.26 -14.95 8.71 22.76 0.20 -14.75 16 10 C 0.12 7.10 5.73 -19.95 -0.11 6.99 16 11 C -0.47 -26.94 9.01 23.28 0.21 -26.73 16 12 H 0.08 4.17 7.91 -2.91 -0.02 4.15 16 13 C 0.03 1.71 5.15 85.28 0.44 2.15 16 14 N -0.81 -43.85 10.95 21.84 0.24 -43.61 16 15 Si 0.99 39.10 29.60 68.60 2.03 41.13 16 16 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 17 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 18 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 19 N -0.48 -19.04 3.19 -524.42 -1.67 -20.71 16 20 C 0.08 2.12 10.86 127.77 1.39 3.51 16 21 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 24 H 0.09 1.80 6.84 -2.39 -0.02 1.78 16 25 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.12 5.53 8.06 -2.91 -0.02 5.50 16 27 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 28 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 29 H 0.10 5.91 6.16 -2.91 -0.02 5.89 16 30 H 0.29 14.06 8.30 -92.71 -0.77 13.29 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.10 2.05 6.88 -2.39 -0.02 2.04 16 Total: -1.00 -68.69 279.34 5.78 -62.91 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 1.09 Total: 23.84 kcal Atomic # 6 Polarization: -67.66 SS G_CDS: 4.09 Total: -63.57 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -1.43 Total: -64.32 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -68.69 5.78 -62.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261048119.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.017 kcal (2) G-P(sol) polarization free energy of solvation -68.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds