Wall clock time and date at job start Mon Mar 30 2020 03:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47085 * 2 1 4 4 C 1.53006 * 109.47011 * 119.99857 * 2 1 3 5 5 N 1.46503 * 109.47018 * 64.99879 * 4 2 1 6 6 C 1.36942 * 119.99860 * 89.99985 * 5 4 2 7 7 H 1.07995 * 119.99910 * 213.21253 * 6 5 4 8 8 C 1.38806 * 119.99877 * 33.21732 * 6 5 4 9 9 N 1.31620 * 120.00412 * 23.82079 * 8 6 5 10 10 Si 1.86806 * 119.99843 * 203.82122 * 8 6 5 11 11 H 1.48502 * 109.46935 * 179.97438 * 10 8 6 12 12 H 1.48502 * 109.46986 * 300.00132 * 10 8 6 13 13 H 1.48497 * 109.46867 * 59.99916 * 10 8 6 14 14 C 1.46494 * 120.00068 * 269.99906 * 5 4 2 15 15 H 1.09009 * 108.85258 * 5.09464 * 14 5 4 16 16 C 1.52942 * 108.88897 * 246.65807 * 14 5 4 17 17 C 1.55154 * 108.96216 * 209.10253 * 16 14 5 18 18 S 1.83990 * 100.90777 * 41.43842 * 17 16 14 19 19 C 1.53704 * 108.89302 * 123.67415 * 14 5 4 20 20 H 1.08999 * 109.46880 * 300.00349 * 1 2 3 21 21 H 1.08997 * 109.47149 * 60.00501 * 1 2 3 22 22 H 1.09001 * 109.46734 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46880 * 239.99651 * 2 1 3 24 24 H 1.09000 * 109.47076 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.47036 * 299.99319 * 3 2 1 26 26 H 1.08999 * 109.47547 * 60.00059 * 3 2 1 27 27 H 1.08998 * 109.47321 * 305.00020 * 4 2 1 28 28 H 1.08994 * 109.46739 * 184.99906 * 4 2 1 29 29 H 0.97002 * 120.00416 * 175.29704 * 9 8 6 30 30 H 1.09001 * 109.60342 * 329.03581 * 16 14 5 31 31 H 1.09001 * 109.60297 * 89.17190 * 16 14 5 32 32 H 1.08995 * 111.13398 * 283.52900 * 17 16 14 33 33 H 1.09000 * 111.16759 * 159.35725 * 17 16 14 34 34 H 1.08998 * 110.34390 * 242.49780 * 19 14 5 35 35 H 1.09004 * 110.33541 * 4.64231 * 19 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2493 5 7 1.6524 -2.1328 1.1907 6 6 2.4846 -3.0475 0.6024 7 1 2.0702 -3.8954 0.0774 8 6 3.8609 -2.8849 0.6809 9 7 4.3853 -2.1778 1.6594 10 14 4.9689 -3.6697 -0.6021 11 1 6.3859 -3.3481 -0.2957 12 1 4.7800 -5.1426 -0.5849 13 1 4.6213 -3.1417 -1.9458 14 6 0.3746 -2.5659 1.7613 15 1 -0.1772 -1.6875 2.0965 16 6 0.6503 -3.4640 2.9682 17 6 -0.5165 -4.4752 3.1212 18 16 -0.8095 -4.9371 1.3645 19 6 -0.4409 -3.2797 0.6714 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 3.1300 1.4424 -0.0005 25 1 1.6768 1.9562 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6054 -0.2617 2.1370 28 1 3.1263 -0.6443 1.2952 29 1 5.3490 -2.1204 1.7540 30 1 1.5848 -4.0041 2.8162 31 1 0.7259 -2.8540 3.8683 32 1 -1.3958 -3.9981 3.5539 33 1 -0.2125 -5.3409 3.7096 34 1 -1.3655 -2.7374 0.4737 35 1 0.1466 -3.3714 -0.2423 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261162480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:04 Heat of formation + Delta-G solvation = 6.664431 kcal Electronic energy + Delta-G solvation = -15137.536895 eV Core-core repulsion = 12875.864977 eV Total energy + Delta-G solvation = -2261.671917 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -37.51316 -34.62132 -32.77001 -30.43760 -28.39478 -26.43330 -25.45654 -24.37632 -22.16082 -19.47774 -19.25029 -16.36690 -16.02063 -15.45392 -14.37822 -14.15918 -13.72570 -13.49188 -13.19247 -13.03053 -12.19254 -12.08530 -11.66738 -11.52480 -11.37750 -11.21660 -10.99461 -10.80247 -10.63784 -10.50015 -10.30316 -9.93958 -9.80642 -9.74591 -9.52185 -9.21348 -8.50347 -7.14141 -6.58516 -5.81247 -3.31829 2.50806 2.97204 3.38338 3.43361 3.46808 4.46887 5.16926 5.24598 5.40407 5.61066 5.72222 5.73524 5.79876 5.85225 5.89375 6.03754 6.16045 6.17455 6.32962 6.38359 6.48234 6.48772 6.56651 6.66638 6.82600 6.96467 7.00688 7.16562 7.31165 7.73693 7.87210 8.49761 9.17459 9.80155 10.34958 11.20325 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.018821 B = 0.012881 C = 0.009108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.380115 B = 2173.180879 C = 3073.565506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.139 4.139 4 C 0.148 3.852 5 N -0.573 5.573 6 C -0.255 4.255 7 H 0.067 0.933 8 C 0.014 3.986 9 N -0.890 5.890 10 Si 0.895 3.105 11 H -0.292 1.292 12 H -0.281 1.281 13 H -0.283 1.283 14 C 0.168 3.832 15 H 0.056 0.944 16 C -0.134 4.134 17 C -0.063 4.063 18 S -0.331 6.331 19 C -0.065 4.065 20 H 0.039 0.961 21 H 0.034 0.966 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.050 0.950 25 H 0.039 0.961 26 H 0.044 0.956 27 H 0.019 0.981 28 H 0.103 0.897 29 H 0.256 0.744 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.195 2.402 0.620 7.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.138 4.138 3 C -0.197 4.197 4 C 0.022 3.978 5 N -0.292 5.292 6 C -0.384 4.384 7 H 0.085 0.915 8 C -0.186 4.186 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.218 1.218 12 H -0.207 1.207 13 H -0.209 1.209 14 C 0.059 3.941 15 H 0.074 0.926 16 C -0.174 4.174 17 C -0.212 4.212 18 S -0.106 6.106 19 C -0.215 4.215 20 H 0.058 0.942 21 H 0.053 0.947 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.037 0.963 28 H 0.120 0.880 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.322 1.455 0.113 7.466 hybrid contribution 0.926 0.645 -0.112 1.134 sum -6.396 2.100 0.000 6.732 Atomic orbital electron populations 1.21905 0.97157 1.01541 0.99339 1.21722 0.94600 0.94816 1.02700 1.21747 1.00825 0.97183 0.99978 1.21137 1.03112 0.82056 0.91486 1.44047 1.16463 1.03247 1.65492 1.18964 0.86577 1.06353 1.26546 0.91513 1.25041 0.97334 0.99223 0.97030 1.69880 1.10966 1.43385 1.29020 0.86477 0.79533 0.79346 0.82182 1.21768 1.20678 1.20949 1.20869 0.88989 0.94973 0.89313 0.92593 1.22906 0.98620 0.96990 0.98899 1.24209 1.01401 1.02085 0.93467 1.87409 1.91812 1.22659 1.08736 1.24588 1.01776 0.91428 1.03679 0.94218 0.94704 0.92008 0.91518 0.93072 0.94178 0.93689 0.96252 0.87983 0.93430 0.88592 0.91852 0.90476 0.88913 0.91016 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.38 37.16 0.31 -2.06 16 2 C -0.12 -2.24 3.13 -90.62 -0.28 -2.52 16 3 C -0.14 -2.31 9.19 37.15 0.34 -1.97 16 4 C 0.15 3.26 4.71 -4.04 -0.02 3.24 16 5 N -0.57 -13.02 2.14 -165.28 -0.35 -13.37 16 6 C -0.25 -6.50 7.82 -15.06 -0.12 -6.62 16 7 H 0.07 1.76 6.91 -52.49 -0.36 1.39 16 8 C 0.01 0.36 4.94 -17.43 -0.09 0.27 16 9 N -0.89 -24.43 11.31 55.49 0.63 -23.80 16 10 Si 0.89 21.25 29.62 -169.99 -5.03 16.21 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.17 3.29 2.06 -67.60 -0.14 3.15 16 15 H 0.06 1.04 7.12 -51.92 -0.37 0.67 16 16 C -0.13 -2.54 5.93 -25.62 -0.15 -2.70 16 17 C -0.06 -1.02 7.52 38.30 0.29 -0.73 16 18 S -0.33 -6.10 23.23 -107.50 -2.50 -8.60 16 19 C -0.06 -1.20 5.32 37.52 0.20 -1.00 16 20 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 1.07 4.47 -51.93 -0.23 0.84 16 23 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.02 0.41 7.95 -51.93 -0.41 0.00 16 28 H 0.10 2.59 5.29 -51.93 -0.27 2.32 16 29 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 30 H 0.10 2.19 7.20 -51.93 -0.37 1.81 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.07 1.18 7.55 -51.93 -0.39 0.79 16 35 H 0.11 2.22 6.57 -51.93 -0.34 1.88 16 LS Contribution 281.28 15.07 4.24 4.24 Total: -1.00 -26.30 281.28 -8.38 -34.67 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.70 Total: 1.59 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 0.34 Total: -10.94 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.27 Total: -37.18 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.21 kcal Atomic # 16 Polarization: -6.10 SS G_CDS: -2.50 Total: -8.60 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -26.30 -8.38 -34.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261162480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.336 kcal (2) G-P(sol) polarization free energy of solvation -26.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds