Wall clock time and date at job start Mon Mar 30 2020 02:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37794 * 120.11491 * 2 1 4 4 C 1.38779 * 120.66499 * 180.02562 * 3 2 1 5 5 C 1.36668 * 120.53388 * 359.70605 * 4 3 2 6 6 C 1.39588 * 119.76017 * 0.02568 * 5 4 3 7 7 C 1.46489 * 134.03542 * 180.02562 * 6 5 4 8 8 C 1.34238 * 106.99961 * 179.97438 * 7 6 5 9 9 C 1.50704 * 125.03334 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.46964 * 204.97801 * 9 8 7 11 11 C 1.52998 * 109.46813 * 84.97760 * 9 8 7 12 12 C 1.50698 * 109.47148 * 324.97940 * 9 8 7 13 13 H 1.08001 * 120.00113 * 5.44342 * 12 9 8 14 14 C 1.37874 * 119.99982 * 185.45024 * 12 9 8 15 15 N 1.31510 * 119.99975 * 9.69948 * 14 12 9 16 16 Si 1.86796 * 119.99897 * 189.70503 * 14 12 9 17 17 H 1.48502 * 109.47192 * 84.99089 * 16 14 12 18 18 H 1.48501 * 109.47127 * 204.99009 * 16 14 12 19 19 H 1.48505 * 109.47423 * 324.99032 * 16 14 12 20 20 N 1.36835 * 109.93863 * 0.02562 * 8 7 6 21 21 H 0.97002 * 125.06650 * 180.02562 * 20 8 7 22 22 C 1.37693 * 109.86899 * 0.02562 * 20 8 7 23 23 H 1.09002 * 109.47437 * 270.48574 * 1 2 3 24 24 H 1.08998 * 109.47137 * 30.48865 * 1 2 3 25 25 H 1.09006 * 109.47561 * 150.48380 * 1 2 3 26 26 H 1.08001 * 119.66237 * 359.77928 * 3 2 1 27 27 H 1.08007 * 119.73596 * 179.72889 * 4 3 2 28 28 H 1.07995 * 120.11832 * 180.02562 * 5 4 3 29 29 H 1.07999 * 126.50644 * 0.03253 * 7 6 5 30 30 H 1.08999 * 109.46894 * 183.50223 * 11 9 8 31 31 H 1.08994 * 109.47273 * 303.50329 * 11 9 8 32 32 H 1.09001 * 109.47099 * 63.50363 * 11 9 8 33 33 H 0.97008 * 120.00202 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1920 0.0000 4 6 3.5860 1.2053 -0.0005 5 6 4.2916 0.0349 0.0050 6 6 3.6116 -1.1842 0.0106 7 6 4.0352 -2.5864 0.0177 8 6 2.9198 -3.3334 0.0214 9 6 2.8876 -4.8400 0.0284 10 1 1.9483 -5.1854 -0.4037 11 6 3.0033 -5.3458 1.4677 12 6 4.0399 -5.3709 -0.7847 13 1 4.7766 -4.6905 -1.1857 14 6 4.1537 -6.7252 -1.0169 15 7 3.1659 -7.5324 -0.6974 16 14 5.7110 -7.4135 -1.7854 17 1 6.7216 -7.6547 -0.7244 18 1 5.4002 -8.6925 -2.4729 19 1 6.2492 -6.4404 -2.7697 20 7 1.8163 -2.5242 0.0168 21 1 0.8974 -2.8349 0.0186 22 6 2.2047 -1.2032 0.0092 23 1 -0.3634 0.0087 1.0276 24 1 -0.3633 0.8855 -0.5214 25 1 -0.3634 -0.8943 -0.5063 26 1 1.6547 2.1252 -0.0036 27 1 4.1127 2.1482 -0.0050 28 1 5.3714 0.0531 0.0049 29 1 5.0520 -2.9505 0.0204 30 1 3.0426 -6.4351 1.4680 31 1 3.9122 -4.9494 1.9202 32 1 2.1374 -5.0134 2.0404 33 1 3.2460 -8.4853 -0.8604 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261295581.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:49 Heat of formation + Delta-G solvation = 34.243772 kcal Electronic energy + Delta-G solvation = -15232.245930 eV Core-core repulsion = 12836.325992 eV Total energy + Delta-G solvation = -2395.919939 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.71206 -36.89346 -34.05022 -32.81956 -30.91771 -29.39771 -27.39152 -26.44148 -25.13990 -22.42080 -21.37927 -20.02619 -19.19047 -17.10418 -16.13020 -15.37761 -14.80231 -14.35020 -14.18725 -13.76105 -13.10856 -12.93916 -12.82042 -12.42533 -12.22139 -11.96647 -11.68126 -11.24910 -11.09364 -10.90433 -10.75772 -10.51291 -10.44026 -10.21443 -9.69955 -9.09584 -8.93067 -8.43887 -7.53840 -6.93967 -6.12753 -4.14058 1.61111 2.10876 3.28867 3.35151 3.38023 3.55302 3.77740 4.36032 4.40647 5.08404 5.21138 5.22383 5.38590 5.51387 5.69261 5.71887 5.79960 5.97997 6.07268 6.30621 6.39738 6.57027 6.64300 6.73177 6.85932 6.93532 6.98280 7.06549 7.27656 7.39919 7.60001 7.71982 7.82534 7.93703 8.18425 8.35564 8.88139 9.49776 10.96997 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.039599 B = 0.006636 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.918669 B = 4218.199920 C = 4639.628824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C -0.121 4.121 4 C -0.153 4.153 5 C -0.084 4.084 6 C -0.097 4.097 7 C -0.219 4.219 8 C 0.137 3.863 9 C 0.092 3.908 10 H 0.042 0.958 11 C -0.125 4.125 12 C -0.510 4.510 13 H 0.066 0.934 14 C 0.064 3.936 15 N -0.890 5.890 16 Si 0.894 3.106 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.273 1.273 20 N -0.597 5.597 21 H 0.407 0.593 22 C 0.087 3.913 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.143 0.857 30 H 0.072 0.928 31 H 0.036 0.964 32 H 0.012 0.988 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.951 12.016 2.124 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.101 4.101 3 C -0.141 4.141 4 C -0.172 4.172 5 C -0.102 4.102 6 C -0.102 4.102 7 C -0.242 4.242 8 C 0.029 3.971 9 C 0.073 3.927 10 H 0.060 0.940 11 C -0.183 4.183 12 C -0.548 4.548 13 H 0.084 0.916 14 C -0.138 4.138 15 N -0.528 5.528 16 Si 0.722 3.278 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.198 1.198 20 N -0.199 5.199 21 H 0.243 0.757 22 C -0.021 4.021 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.161 0.839 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.031 0.969 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.108 11.745 2.115 12.332 hybrid contribution 0.380 -0.592 -0.435 0.827 sum -2.728 11.153 1.680 11.604 Atomic orbital electron populations 1.20652 0.91990 1.02148 1.01685 1.18786 0.94826 0.90457 1.06070 1.20477 0.94080 0.95850 1.03650 1.20435 0.93931 0.97359 1.05491 1.20200 0.99067 0.90766 1.00185 1.19404 0.92015 0.94125 1.04705 1.21385 0.98479 0.88840 1.15501 1.21504 0.84589 0.94923 0.96067 1.17628 0.99401 0.81176 0.94482 0.94047 1.21715 0.97643 1.02834 0.96076 1.21066 1.08895 0.92152 1.32734 0.91588 1.24944 0.96369 0.97063 0.95437 1.69957 1.30448 1.04151 1.48243 0.86562 0.83520 0.78349 0.79384 1.20398 1.21334 1.19785 1.42016 1.08634 1.03785 1.65469 0.75660 1.18071 0.93975 0.84676 1.05353 0.91779 0.91671 0.92511 0.86722 0.86915 0.86720 0.83880 0.90945 0.94505 0.96886 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.02 36.00 0.36 -0.95 16 2 C -0.10 -1.54 5.89 -104.47 -0.62 -2.16 16 3 C -0.12 -1.74 9.67 -39.54 -0.38 -2.13 16 4 C -0.15 -2.24 9.97 -39.95 -0.40 -2.63 16 5 C -0.08 -1.40 10.05 -39.65 -0.40 -1.80 16 6 C -0.10 -1.90 6.37 -105.14 -0.67 -2.57 16 7 C -0.22 -4.69 9.92 -37.67 -0.37 -5.07 16 8 C 0.14 2.98 6.02 -81.77 -0.49 2.49 16 9 C 0.09 2.24 2.61 -92.92 -0.24 2.00 16 10 H 0.04 1.07 8.09 -51.93 -0.42 0.65 16 11 C -0.12 -2.86 9.05 37.16 0.34 -2.53 16 12 C -0.51 -13.55 8.18 -34.44 -0.28 -13.83 16 13 H 0.07 1.75 6.63 -52.49 -0.35 1.40 16 14 C 0.06 1.72 5.17 -17.82 -0.09 1.62 16 15 N -0.89 -24.72 12.17 55.43 0.67 -24.04 16 16 Si 0.89 20.85 29.55 -169.99 -5.02 15.83 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 N -0.60 -11.28 6.07 -6.95 -0.04 -11.32 16 21 H 0.41 6.64 8.86 -40.82 -0.36 6.28 16 22 C 0.09 1.60 6.95 -83.99 -0.58 1.02 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 25 H 0.06 0.68 7.99 -51.93 -0.41 0.26 16 26 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 27 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 28 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.14 3.05 7.47 -52.49 -0.39 2.66 16 30 H 0.07 1.80 6.84 -51.93 -0.36 1.45 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 279.87 15.07 4.22 4.22 Total: -1.00 -28.53 279.87 -8.39 -36.92 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -4.38 Total: 4.94 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: -3.83 Total: -26.54 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.63 Total: -35.37 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.53 -8.39 -36.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261295581.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.166 kcal (2) G-P(sol) polarization free energy of solvation -28.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds