Wall clock time and date at job start Mon Mar 30 2020 02:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37794 * 120.11491 * 2 1 4 4 C 1.38779 * 120.66499 * 180.02562 * 3 2 1 5 5 C 1.36668 * 120.53388 * 359.70605 * 4 3 2 6 6 C 1.39588 * 119.76017 * 0.02568 * 5 4 3 7 7 C 1.46489 * 134.03542 * 180.02562 * 6 5 4 8 8 C 1.34238 * 106.99961 * 179.97438 * 7 6 5 9 9 C 1.50704 * 125.03334 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.46964 * 204.97801 * 9 8 7 11 11 C 1.52998 * 109.46813 * 84.97760 * 9 8 7 12 12 C 1.50698 * 109.47148 * 324.97940 * 9 8 7 13 13 H 1.08001 * 120.00113 * 5.44342 * 12 9 8 14 14 C 1.37874 * 119.99982 * 185.45024 * 12 9 8 15 15 N 1.31510 * 119.99975 * 9.69948 * 14 12 9 16 16 Si 1.86796 * 119.99897 * 189.70503 * 14 12 9 17 17 H 1.48502 * 109.47192 * 84.99089 * 16 14 12 18 18 H 1.48501 * 109.47127 * 204.99009 * 16 14 12 19 19 H 1.48505 * 109.47423 * 324.99032 * 16 14 12 20 20 N 1.36835 * 109.93863 * 0.02562 * 8 7 6 21 21 H 0.97002 * 125.06650 * 180.02562 * 20 8 7 22 22 C 1.37693 * 109.86899 * 0.02562 * 20 8 7 23 23 H 1.09002 * 109.47437 * 270.48574 * 1 2 3 24 24 H 1.08998 * 109.47137 * 30.48865 * 1 2 3 25 25 H 1.09006 * 109.47561 * 150.48380 * 1 2 3 26 26 H 1.08001 * 119.66237 * 359.77928 * 3 2 1 27 27 H 1.08007 * 119.73596 * 179.72889 * 4 3 2 28 28 H 1.07995 * 120.11832 * 180.02562 * 5 4 3 29 29 H 1.07999 * 126.50644 * 0.03253 * 7 6 5 30 30 H 1.08999 * 109.46894 * 183.50223 * 11 9 8 31 31 H 1.08994 * 109.47273 * 303.50329 * 11 9 8 32 32 H 1.09001 * 109.47099 * 63.50363 * 11 9 8 33 33 H 0.97008 * 120.00202 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1920 0.0000 4 6 3.5860 1.2053 -0.0005 5 6 4.2916 0.0349 0.0050 6 6 3.6116 -1.1842 0.0106 7 6 4.0352 -2.5864 0.0177 8 6 2.9198 -3.3334 0.0214 9 6 2.8876 -4.8400 0.0284 10 1 1.9483 -5.1854 -0.4037 11 6 3.0033 -5.3458 1.4677 12 6 4.0399 -5.3709 -0.7847 13 1 4.7766 -4.6905 -1.1857 14 6 4.1537 -6.7252 -1.0169 15 7 3.1659 -7.5324 -0.6974 16 14 5.7110 -7.4135 -1.7854 17 1 6.7216 -7.6547 -0.7244 18 1 5.4002 -8.6925 -2.4729 19 1 6.2492 -6.4404 -2.7697 20 7 1.8163 -2.5242 0.0168 21 1 0.8974 -2.8349 0.0186 22 6 2.2047 -1.2032 0.0092 23 1 -0.3634 0.0087 1.0276 24 1 -0.3633 0.8855 -0.5214 25 1 -0.3634 -0.8943 -0.5063 26 1 1.6547 2.1252 -0.0036 27 1 4.1127 2.1482 -0.0050 28 1 5.3714 0.0531 0.0049 29 1 5.0520 -2.9505 0.0204 30 1 3.0426 -6.4351 1.4680 31 1 3.9122 -4.9494 1.9202 32 1 2.1374 -5.0134 2.0404 33 1 3.2460 -8.4853 -0.8604 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261295581.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:49 Heat of formation + Delta-G solvation = 19.493193 kcal Electronic energy + Delta-G solvation = -15232.885563 eV Core-core repulsion = 12836.325992 eV Total energy + Delta-G solvation = -2396.559572 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.12824 -38.25317 -35.91464 -34.04297 -32.83383 -30.75569 -28.90804 -27.55431 -27.16696 -24.11116 -22.67866 -21.42776 -20.84569 -18.54737 -18.03209 -16.95615 -16.36568 -15.80400 -15.54712 -15.12358 -14.72370 -14.37689 -14.08485 -13.98760 -13.71232 -13.44534 -13.10243 -12.95458 -12.75093 -12.49742 -12.34149 -12.16312 -12.06320 -11.67053 -11.53554 -11.07468 -10.50732 -10.28589 -8.90695 -8.39316 -8.17831 -6.25822 0.32144 0.83590 1.42546 1.43878 1.52941 1.96991 2.30745 2.48787 3.07188 3.14364 3.90821 4.06146 4.16798 4.33337 4.50015 4.55584 4.67730 4.76828 4.80456 4.84693 5.01167 5.02324 5.08461 5.13483 5.28324 5.36545 5.46917 5.66283 5.72028 5.79144 5.83517 6.00908 6.08850 6.28485 6.47132 6.79522 6.82963 7.41040 8.90844 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.039599 B = 0.006636 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.918669 B = 4218.199920 C = 4639.628824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.107 4.107 3 C -0.113 4.113 4 C -0.144 4.144 5 C -0.099 4.099 6 C -0.129 4.129 7 C -0.233 4.233 8 C 0.115 3.885 9 C 0.096 3.904 10 H 0.016 0.984 11 C -0.113 4.113 12 C -0.525 4.525 13 H 0.059 0.941 14 C 0.019 3.981 15 N -0.917 5.917 16 Si 0.954 3.046 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.271 1.271 20 N -0.593 5.593 21 H 0.416 0.584 22 C 0.072 3.928 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.052 0.948 26 H 0.154 0.846 27 H 0.149 0.851 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.206 14.606 2.085 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.109 4.109 3 C -0.132 4.132 4 C -0.163 4.163 5 C -0.118 4.118 6 C -0.134 4.134 7 C -0.257 4.257 8 C 0.007 3.993 9 C 0.076 3.924 10 H 0.034 0.966 11 C -0.171 4.171 12 C -0.563 4.563 13 H 0.077 0.923 14 C -0.180 4.180 15 N -0.556 5.556 16 Si 0.780 3.220 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.196 1.196 20 N -0.196 5.196 21 H 0.253 0.747 22 C -0.035 4.035 23 H 0.094 0.906 24 H 0.108 0.892 25 H 0.072 0.928 26 H 0.172 0.828 27 H 0.167 0.833 28 H 0.145 0.855 29 H 0.149 0.851 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.375 14.350 2.080 14.887 hybrid contribution 0.432 -1.221 -0.418 1.361 sum -2.943 13.129 1.662 13.557 Atomic orbital electron populations 1.20714 0.89530 1.03250 1.02819 1.19270 0.96814 0.89641 1.05219 1.21026 0.94267 0.96844 1.01078 1.20899 0.94420 0.97908 1.03056 1.20486 1.00060 0.90580 1.00667 1.19604 0.93053 0.94008 1.06754 1.21421 0.97877 0.90584 1.15792 1.21032 0.85925 0.93839 0.98520 1.17419 0.97298 0.83186 0.94478 0.96574 1.21551 0.98540 1.01145 0.95901 1.21339 1.09512 0.92455 1.33039 0.92323 1.25665 0.99001 0.97335 0.96040 1.70056 1.31948 1.04327 1.49266 0.85624 0.80137 0.77608 0.78674 1.19710 1.20886 1.19583 1.41847 1.08351 1.03924 1.65505 0.74655 1.18470 0.94044 0.85111 1.05883 0.90554 0.89181 0.92849 0.82838 0.83347 0.85517 0.85070 0.93205 0.94423 0.94924 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 10.02 71.23 0.71 -1.53 16 2 C -0.11 -3.03 5.89 -19.77 -0.12 -3.15 16 3 C -0.11 -2.76 9.67 22.29 0.22 -2.54 16 4 C -0.14 -3.66 9.97 22.03 0.22 -3.44 16 5 C -0.10 -3.16 10.05 22.23 0.22 -2.94 16 6 C -0.13 -5.04 6.37 -20.20 -0.13 -5.17 16 7 C -0.23 -10.32 9.92 23.51 0.23 -10.08 16 8 C 0.12 5.19 6.02 40.87 0.25 5.43 16 9 C 0.10 4.82 2.61 -12.29 -0.03 4.78 16 10 H 0.02 0.88 8.09 -2.39 -0.02 0.86 16 11 C -0.11 -5.37 9.05 71.98 0.65 -4.72 16 12 C -0.53 -28.84 8.18 25.60 0.21 -28.63 16 13 H 0.06 3.23 6.63 -2.91 -0.02 3.21 16 14 C 0.02 1.04 5.17 84.65 0.44 1.47 16 15 N -0.92 -52.18 12.17 21.45 0.26 -51.92 16 16 Si 0.95 43.41 29.55 68.60 2.03 45.44 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 N -0.59 -22.68 6.07 -175.90 -1.07 -23.74 16 21 H 0.42 13.74 8.86 -92.71 -0.82 12.92 16 22 C 0.07 2.60 6.95 39.03 0.27 2.87 16 23 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.09 1.45 8.09 -2.39 -0.02 1.43 16 25 H 0.05 1.16 7.99 -2.38 -0.02 1.14 16 26 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 27 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 28 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 29 H 0.13 5.90 7.47 -2.91 -0.02 5.88 16 30 H 0.05 2.55 6.84 -2.39 -0.02 2.54 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 Total: -1.00 -62.45 279.87 4.65 -57.80 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.29 Total: 20.06 kcal Atomic # 6 Polarization: -50.79 SS G_CDS: 3.14 Total: -47.64 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -0.81 Total: -75.66 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -62.45 4.65 -57.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261295581.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.297 kcal (2) G-P(sol) polarization free energy of solvation -62.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds