Wall clock time and date at job start Mon Mar 30 2020 03:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47622 * 2 1 4 4 N 1.46504 * 109.47084 * 119.99949 * 2 1 3 5 5 C 1.36935 * 120.00430 * 125.59430 * 4 2 1 6 6 H 1.07995 * 120.00647 * 148.91488 * 5 4 2 7 7 C 1.38815 * 119.99452 * 328.91418 * 5 4 2 8 8 N 1.31615 * 120.00446 * 333.13160 * 7 5 4 9 9 Si 1.86802 * 119.99719 * 153.13590 * 7 5 4 10 10 H 1.48505 * 109.47123 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.47106 * 59.99751 * 9 7 5 12 12 H 1.48499 * 109.47135 * 299.99738 * 9 7 5 13 13 C 1.46502 * 119.99608 * 305.59171 * 4 2 1 14 14 C 1.53008 * 109.46972 * 95.58207 * 13 4 2 15 15 H 1.08998 * 108.84842 * 307.01470 * 14 13 4 16 16 C 1.52935 * 108.88611 * 188.57559 * 14 13 4 17 17 C 1.55155 * 108.96135 * 209.10729 * 16 14 13 18 18 S 1.83985 * 100.91101 * 41.43619 * 17 16 14 19 19 C 1.53704 * 108.88643 * 65.59482 * 14 13 4 20 20 H 1.09001 * 109.47104 * 300.00258 * 1 2 3 21 21 H 1.09001 * 109.46774 * 60.00051 * 1 2 3 22 22 H 1.08997 * 109.47515 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47104 * 239.99742 * 2 1 3 24 24 H 1.08995 * 109.47708 * 179.25939 * 3 2 1 25 25 H 1.09007 * 109.46811 * 299.26408 * 3 2 1 26 26 H 1.09003 * 109.47163 * 59.25380 * 3 2 1 27 27 H 0.97003 * 119.99850 * 356.12093 * 8 7 5 28 28 H 1.09000 * 109.47162 * 215.57995 * 13 4 2 29 29 H 1.08993 * 109.47275 * 335.57970 * 13 4 2 30 30 H 1.09004 * 109.60506 * 329.03493 * 16 14 13 31 31 H 1.09004 * 109.60713 * 89.17259 * 16 14 13 32 32 H 1.09009 * 111.12663 * 283.52958 * 17 16 14 33 33 H 1.08997 * 111.17347 * 159.36741 * 17 16 14 34 34 H 1.09004 * 110.34251 * 242.49187 * 19 14 13 35 35 H 1.08996 * 110.34562 * 4.74461 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8973 -1.7335 1.0739 6 1 3.6255 -1.9197 1.8493 7 6 2.8522 -2.5513 -0.0468 8 7 1.7237 -2.7008 -0.7075 9 14 4.3931 -3.4399 -0.6171 10 1 4.0820 -4.2439 -1.8264 11 1 4.8753 -4.3377 0.4631 12 1 5.4469 -2.4451 -0.9412 13 6 1.5662 -0.2654 2.5233 14 6 0.3871 -1.1355 2.9634 15 1 -0.3732 -1.1195 2.1825 16 6 -0.2099 -0.5495 4.2437 17 6 -0.8374 -1.6969 5.0785 18 16 0.4359 -3.0098 4.8783 19 6 0.8775 -2.5801 3.1510 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 3.1299 1.4425 0.0133 25 1 1.6875 1.9524 -0.8966 26 1 1.6659 1.9602 0.8832 27 1 0.9110 -2.2849 -0.3797 28 1 2.3831 -0.3725 3.2370 29 1 1.2530 0.7778 2.4834 30 1 0.5743 -0.0622 4.8232 31 1 -0.9788 0.1798 3.9883 32 1 -1.7939 -2.0099 4.6596 33 1 -0.9445 -1.4096 6.1245 34 1 0.3698 -3.2462 2.4532 35 1 1.9570 -2.6350 3.0110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308140134.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:00 Heat of formation + Delta-G solvation = 2.982840 kcal Electronic energy + Delta-G solvation = -15201.064012 eV Core-core repulsion = 12939.232449 eV Total energy + Delta-G solvation = -2261.831563 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -37.80012 -35.20688 -31.96843 -30.72873 -28.54847 -26.48405 -26.00068 -23.59984 -22.46488 -19.69245 -19.05065 -17.44743 -16.16031 -15.16477 -14.57490 -14.03052 -13.71398 -13.67212 -13.12475 -13.07651 -12.57854 -12.02188 -11.81659 -11.63280 -11.51782 -11.33670 -11.02219 -10.80637 -10.58269 -10.43588 -10.26706 -10.09049 -9.93744 -9.79343 -9.34186 -9.26809 -8.34751 -7.26869 -6.86167 -6.11874 -3.28252 2.35162 2.90423 3.49088 3.51942 3.69262 4.55737 4.94970 5.05658 5.20676 5.36440 5.47960 5.61778 5.72847 5.84812 5.88744 6.01357 6.11066 6.16481 6.28754 6.30388 6.36417 6.44260 6.49968 6.57408 6.60056 6.72119 6.93471 6.96772 7.19941 7.31240 8.04142 8.59041 9.12924 9.82118 10.26996 11.17543 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.023996 B = 0.010943 C = 0.008427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.564304 B = 2558.033272 C = 3321.946183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.158 3.842 3 C -0.158 4.158 4 N -0.589 5.589 5 C -0.352 4.352 6 H 0.054 0.946 7 C -0.016 4.016 8 N -0.908 5.908 9 Si 1.057 2.943 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.293 1.293 13 C 0.159 3.841 14 C -0.119 4.119 15 H 0.073 0.927 16 C -0.118 4.118 17 C -0.063 4.063 18 S -0.350 6.350 19 C -0.024 4.024 20 H 0.038 0.962 21 H 0.040 0.960 22 H 0.056 0.944 23 H 0.090 0.910 24 H 0.050 0.950 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.274 0.726 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.970 5.386 5.939 8.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.051 3.949 3 C -0.217 4.217 4 N -0.310 5.310 5 C -0.481 4.481 6 H 0.072 0.928 7 C -0.220 4.220 8 N -0.548 5.548 9 Si 0.887 3.113 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.221 1.221 13 C 0.031 3.969 14 C -0.142 4.142 15 H 0.091 0.909 16 C -0.158 4.158 17 C -0.212 4.212 18 S -0.125 6.125 19 C -0.171 4.171 20 H 0.058 0.942 21 H 0.059 0.941 22 H 0.075 0.925 23 H 0.108 0.892 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.913 3.496 5.498 7.136 hybrid contribution -1.162 1.764 0.481 2.167 sum -4.075 5.260 5.979 8.945 Atomic orbital electron populations 1.22323 0.98827 1.01115 0.99248 1.20470 0.91170 0.90720 0.92531 1.22275 1.01153 0.98987 0.99306 1.44047 1.51827 1.35935 0.99237 1.19807 1.10822 1.07919 1.09549 0.92835 1.25755 1.02325 0.96676 0.97256 1.70810 0.99134 1.40787 1.44101 0.83632 0.75286 0.76012 0.76375 1.21176 1.21929 1.22062 1.20922 0.92996 0.94470 0.88511 1.22435 1.00414 0.95059 0.96318 0.90864 1.22453 0.99832 0.97344 0.96134 1.24198 0.98598 0.95387 1.02974 1.87652 1.51027 1.49186 1.24604 1.24118 1.06784 0.97327 0.88860 0.94245 0.94140 0.92496 0.89191 0.93095 0.94182 0.94272 0.91376 0.93815 0.94109 0.90912 0.91174 0.90003 0.88632 0.90383 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 7.76 37.15 0.29 -2.73 16 2 C 0.16 3.42 2.24 -67.93 -0.15 3.27 16 3 C -0.16 -2.95 9.25 37.16 0.34 -2.61 16 4 N -0.59 -13.42 2.18 -165.66 -0.36 -13.78 16 5 C -0.35 -9.04 7.16 -15.06 -0.11 -9.15 16 6 H 0.05 1.43 7.73 -52.49 -0.41 1.02 16 7 C -0.02 -0.44 4.62 -17.43 -0.08 -0.52 16 8 N -0.91 -25.48 12.36 55.49 0.69 -24.79 16 9 Si 1.06 24.55 30.00 -169.99 -5.10 19.45 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 13 C 0.16 3.10 4.00 -4.04 -0.02 3.08 16 14 C -0.12 -2.16 2.68 -90.28 -0.24 -2.40 16 15 H 0.07 1.40 5.91 -51.93 -0.31 1.10 16 16 C -0.12 -1.72 5.79 -25.62 -0.15 -1.86 16 17 C -0.06 -0.90 7.52 38.30 0.29 -0.61 16 18 S -0.35 -6.33 23.23 -107.50 -2.50 -8.83 16 19 C -0.02 -0.48 6.33 37.52 0.24 -0.24 16 20 H 0.04 0.69 6.72 -51.93 -0.35 0.35 16 21 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.06 1.21 6.15 -51.93 -0.32 0.89 16 23 H 0.09 2.27 5.90 -51.93 -0.31 1.97 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.68 6.95 -51.93 -0.36 0.32 16 27 H 0.27 7.54 5.27 -40.82 -0.22 7.33 16 28 H 0.04 0.89 8.06 -51.93 -0.42 0.47 16 29 H 0.04 0.74 6.52 -51.93 -0.34 0.40 16 30 H 0.07 1.04 7.83 -51.93 -0.41 0.63 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.10 8.14 -51.92 -0.42 0.67 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 35 H 0.12 2.77 5.64 -51.93 -0.29 2.47 16 LS Contribution 276.12 15.07 4.16 4.16 Total: -1.00 -27.04 276.12 -8.17 -35.22 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.48 Total: 2.35 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 0.41 Total: -13.77 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.32 Total: -38.57 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.10 Total: 19.45 kcal Atomic # 16 Polarization: -6.33 SS G_CDS: -2.50 Total: -8.83 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.04 -8.17 -35.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308140134.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.199 kcal (2) G-P(sol) polarization free energy of solvation -27.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds