Wall clock time and date at job start Mon Mar 30 2020 03:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08999 * 109.46796 * 107.66537 * 3 2 1 5 5 C 1.53003 * 109.47187 * 347.66050 * 3 2 1 6 6 C 1.53001 * 109.46818 * 175.00034 * 5 3 2 7 7 N 1.46501 * 109.46986 * 227.66374 * 3 2 1 8 8 C 1.39693 * 119.99851 * 275.00050 * 7 3 2 9 9 C 1.39341 * 119.94675 * 359.97438 * 8 7 3 10 10 C 1.38484 * 120.41568 * 180.02562 * 9 8 7 11 11 C 1.37678 * 120.32896 * 0.25527 * 10 9 8 12 12 C 1.40753 * 119.89300 * 359.45495 * 11 10 9 13 13 C 1.41407 * 120.20831 * 180.27274 * 12 11 10 14 14 H 1.08006 * 119.99991 * 204.63385 * 13 12 11 15 15 C 1.39926 * 120.00139 * 24.62781 * 13 12 11 16 16 N 1.30828 * 120.00037 * 17.73814 * 15 13 12 17 17 Si 1.86798 * 120.00135 * 197.72868 * 15 13 12 18 18 H 1.48502 * 109.47227 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47059 * 120.00422 * 17 15 13 20 20 H 1.48498 * 109.47571 * 240.00134 * 17 15 13 21 21 C 1.38268 * 119.95151 * 180.02562 * 8 7 3 22 22 H 4.18735 * 15.03917 * 0.02562 * 4 2 1 23 23 H 1.08999 * 109.46993 * 295.00214 * 5 3 2 24 24 H 1.09001 * 109.46803 * 55.00221 * 5 3 2 25 25 H 1.08998 * 109.46488 * 180.02562 * 6 5 3 26 26 H 1.08992 * 109.47107 * 300.00046 * 6 5 3 27 27 H 1.08996 * 109.47182 * 60.00019 * 6 5 3 28 28 H 0.96996 * 120.00256 * 95.00095 * 7 3 2 29 29 H 1.07990 * 119.79287 * 0.02562 * 9 8 7 30 30 H 1.08003 * 119.83136 * 179.97438 * 10 9 8 31 31 H 1.08000 * 120.05373 * 179.72241 * 11 10 9 32 32 H 0.97001 * 120.00359 * 179.97438 * 16 15 13 33 33 H 1.08005 * 120.16195 * 359.95171 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.3127 -0.9792 5 6 3.1567 -1.4083 0.3083 6 6 4.6815 -1.4362 0.1858 7 7 3.1339 0.9311 1.0210 8 6 3.2667 2.2892 0.7221 9 6 2.9353 2.7576 -0.5477 10 6 3.0637 4.1019 -0.8547 11 6 3.5255 4.9899 0.0906 12 6 3.8584 4.5323 1.3794 13 6 4.3279 5.4395 2.3573 14 1 4.9419 5.0852 3.1721 15 6 3.9971 6.7963 2.2691 16 7 2.9981 7.1784 1.5158 17 14 4.9817 8.0619 3.2273 18 1 6.0514 7.3774 3.9972 19 1 5.5946 9.0306 2.2831 20 1 4.0826 8.7839 4.1629 21 6 3.7278 3.1664 1.6863 22 1 -1.0500 0.0003 0.0005 23 1 2.8684 -1.6855 1.3223 24 1 2.7224 -2.1149 -0.3990 25 1 5.0452 -2.4401 0.4050 26 1 4.9697 -1.1590 -0.8281 27 1 5.1158 -0.7295 0.8930 28 1 3.3648 0.6042 1.9046 29 1 2.5760 2.0680 -1.2971 30 1 2.8045 4.4546 -1.8421 31 1 3.6281 6.0365 -0.1550 32 1 2.7685 8.1189 1.4550 33 1 3.9850 2.8044 2.6708 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313429792.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:28 Heat of formation + Delta-G solvation = 48.874147 kcal Electronic energy + Delta-G solvation = -14933.836758 eV Core-core repulsion = 12538.551240 eV Total energy + Delta-G solvation = -2395.285518 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.91503 -37.90397 -35.50264 -33.55096 -33.04745 -31.68666 -29.41214 -27.21735 -26.82592 -23.18997 -22.42220 -21.89870 -19.38809 -19.02614 -17.46419 -16.91942 -16.53872 -16.23650 -15.80549 -15.09648 -14.63980 -14.40667 -13.99206 -13.86634 -13.60425 -13.11404 -12.83845 -12.76414 -12.50364 -12.30829 -12.13486 -11.91238 -11.73433 -11.37365 -11.18201 -11.12075 -10.98624 -10.61362 -9.35051 -8.61476 -8.02332 -6.32940 1.03352 1.32088 1.39428 1.54424 1.57886 1.77357 1.92434 2.23189 2.79586 2.97437 3.48112 3.85508 4.05285 4.13447 4.40978 4.49127 4.61015 4.75519 4.88321 5.07309 5.10992 5.13496 5.15858 5.16557 5.27233 5.40621 5.43942 5.57354 5.92289 6.00487 6.18996 6.29402 6.60537 6.72279 6.86983 7.00399 7.01965 7.22527 8.37405 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.039224 B = 0.005939 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.675184 B = 4713.084029 C = 5005.313539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.228 4.228 3 C 0.259 3.741 4 H 0.089 0.911 5 C -0.112 4.112 6 C -0.148 4.148 7 N -0.739 5.739 8 C 0.235 3.765 9 C -0.302 4.302 10 C -0.076 4.076 11 C -0.231 4.231 12 C 0.112 3.888 13 C -0.501 4.501 14 H 0.073 0.927 15 C 0.035 3.965 16 N -0.825 5.825 17 Si 0.983 3.017 18 H -0.258 1.258 19 H -0.264 1.264 20 H -0.265 1.265 21 C -0.308 4.308 22 H 0.243 0.757 23 H 0.073 0.927 24 H 0.092 0.908 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.398 0.602 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.287 0.713 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.142 -11.587 -1.905 11.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.230 4.230 3 C 0.154 3.846 4 H 0.107 0.893 5 C -0.150 4.150 6 C -0.205 4.205 7 N -0.370 5.370 8 C 0.134 3.866 9 C -0.324 4.324 10 C -0.095 4.095 11 C -0.251 4.251 12 C 0.109 3.891 13 C -0.531 4.531 14 H 0.091 0.909 15 C -0.179 4.179 16 N -0.451 5.451 17 Si 0.804 3.196 18 H -0.182 1.182 19 H -0.188 1.188 20 H -0.190 1.190 21 C -0.332 4.332 22 H 0.259 0.741 23 H 0.091 0.909 24 H 0.111 0.889 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.233 0.767 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.311 -11.472 -2.139 11.674 hybrid contribution -0.039 0.816 0.681 1.064 sum -0.351 -10.656 -1.458 10.761 Atomic orbital electron populations 1.25722 0.96882 0.99792 0.99488 1.24507 0.96118 1.00987 1.01343 1.17899 0.82414 0.91066 0.93260 0.89293 1.21689 0.97057 0.92938 1.03326 1.21735 0.94286 1.02409 1.02095 1.44511 1.74030 1.03529 1.14969 1.17507 0.92462 0.83639 0.92969 1.20130 1.20294 0.95506 0.96511 1.20712 0.97585 0.93344 0.97830 1.21105 1.11213 0.98747 0.94054 1.17719 0.87374 0.91726 0.92303 1.19831 1.30060 0.93193 1.09974 0.90869 1.26785 0.94239 1.01223 0.95695 1.69928 1.22478 1.18952 1.33751 0.85155 0.78869 0.77151 0.78446 1.18161 1.18813 1.19025 1.20512 1.20223 0.94050 0.98448 0.74068 0.90873 0.88928 0.90571 0.92651 0.93432 0.76703 0.87555 0.87549 0.88539 0.90263 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.55 19.25 74.32 1.43 -4.12 16 2 C -0.23 -7.06 12.67 31.12 0.39 -6.67 16 3 C 0.26 7.62 2.14 43.19 0.09 7.71 16 4 H 0.09 2.74 6.47 -2.39 -0.02 2.72 16 5 C -0.11 -2.37 5.43 30.60 0.17 -2.21 16 6 C -0.15 -2.96 9.80 71.98 0.71 -2.26 16 7 N -0.74 -26.13 4.66 -327.75 -1.53 -27.65 16 8 C 0.23 10.69 6.61 38.16 0.25 10.94 16 9 C -0.30 -13.91 9.14 22.59 0.21 -13.70 16 10 C -0.08 -3.76 10.01 22.20 0.22 -3.54 16 11 C -0.23 -12.89 8.69 22.75 0.20 -12.69 16 12 C 0.11 6.37 5.57 -21.31 -0.12 6.25 16 13 C -0.50 -28.26 9.05 23.46 0.21 -28.05 16 14 H 0.07 3.99 7.91 -2.91 -0.02 3.97 16 15 C 0.04 1.85 5.14 85.25 0.44 2.29 16 16 N -0.83 -45.02 10.96 21.82 0.24 -44.78 16 17 Si 0.98 39.42 29.59 68.60 2.03 41.45 16 18 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 19 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 21 C -0.31 -15.90 9.63 22.85 0.22 -15.68 16 22 H 0.24 4.66 7.80 -4.42 -0.03 4.63 16 23 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.05 1.10 7.75 -2.39 -0.02 1.08 16 28 H 0.40 12.81 8.61 -92.71 -0.80 12.01 16 29 H 0.11 4.40 6.14 -2.92 -0.02 4.38 16 30 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 31 H 0.10 5.62 6.16 -2.91 -0.02 5.60 16 32 H 0.29 14.04 8.30 -92.71 -0.77 13.27 16 33 H 0.09 4.54 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -64.22 287.50 5.46 -58.76 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: 0.30 Total: 33.94 kcal Atomic # 6 Polarization: -66.13 SS G_CDS: 4.42 Total: -61.71 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -1.29 Total: -72.44 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -64.22 5.46 -58.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313429792.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.632 kcal (2) G-P(sol) polarization free energy of solvation -64.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds