Wall clock time and date at job start Mon Mar 30 2020 03:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46900 * 109.47213 * 56.24361 * 3 2 1 5 5 C 1.46899 * 110.99521 * 174.80170 * 4 3 2 6 6 H 1.09004 * 109.47278 * 325.24593 * 5 4 3 7 7 C 1.52998 * 109.46968 * 205.24963 * 5 4 3 8 8 C 1.50703 * 109.47376 * 64.99983 * 7 5 4 9 9 H 1.07997 * 119.99768 * 359.97438 * 8 7 5 10 10 C 1.37871 * 120.00104 * 180.02562 * 8 7 5 11 11 N 1.31513 * 120.00110 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99969 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47440 * 89.99389 * 12 10 8 14 14 H 1.48497 * 109.47340 * 209.99657 * 12 10 8 15 15 H 1.48503 * 109.47195 * 329.99399 * 12 10 8 16 16 C 1.50704 * 109.47311 * 85.24968 * 5 4 3 17 17 C 1.38233 * 119.99697 * 46.34199 * 16 5 4 18 18 C 1.38236 * 119.99674 * 179.80879 * 17 16 5 19 19 C 1.38230 * 120.00273 * 0.40103 * 18 17 16 20 20 C 1.38240 * 119.99795 * 359.85239 * 19 18 17 21 21 C 1.38230 * 119.99970 * 359.95702 * 20 19 18 22 22 H 4.40882 * 5.52208 * 180.02562 * 4 1 2 23 23 H 1.09003 * 109.47213 * 296.23874 * 3 2 1 24 24 H 1.09006 * 109.46392 * 176.24118 * 3 2 1 25 25 H 1.00895 * 111.00003 * 298.75093 * 4 3 2 26 26 H 1.08998 * 109.47546 * 185.00487 * 7 5 4 27 27 H 1.09002 * 109.47293 * 305.00181 * 7 5 4 28 28 H 0.97007 * 119.99900 * 180.02562 * 11 10 8 29 29 H 1.07995 * 120.00235 * 359.97438 * 17 16 5 30 30 H 1.08003 * 120.00041 * 180.23017 * 18 17 16 31 31 H 1.07998 * 120.00510 * 179.83126 * 19 18 17 32 32 H 1.07997 * 120.00257 * 179.97438 * 20 19 18 33 33 H 1.08007 * 120.00237 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1360 -0.7687 -1.1515 5 6 4.5991 -0.6875 -1.2546 6 1 4.9319 0.2994 -0.9328 7 6 5.0217 -0.9197 -2.7066 8 6 4.4986 0.2011 -3.5675 9 1 3.9220 0.9990 -3.1235 10 6 4.7552 0.2073 -4.9221 11 7 5.4570 -0.7647 -5.4629 12 14 4.1074 1.5969 -5.9891 13 1 5.1131 2.6881 -6.0454 14 1 3.8504 1.0894 -7.3607 15 1 2.8434 2.1182 -5.4093 16 6 5.2239 -1.7398 -0.3751 17 6 4.7431 -3.0356 -0.3997 18 6 5.3188 -4.0017 0.4041 19 6 6.3698 -3.6702 1.2386 20 6 6.8472 -2.3731 1.2670 21 6 6.2741 -1.4079 0.4604 22 1 -1.0499 0.0000 -0.0003 23 1 3.0096 -0.4535 0.9218 24 1 3.0088 1.0264 -0.0674 25 1 2.8298 -1.7288 -1.1016 26 1 6.1096 -0.9480 -2.7683 27 1 4.6133 -1.8678 -3.0567 28 1 5.6378 -0.7601 -6.4159 29 1 3.9195 -3.2937 -1.0488 30 1 4.9456 -5.0149 0.3822 31 1 6.8178 -4.4243 1.8686 32 1 7.6680 -2.1140 1.9192 33 1 6.6473 -0.3946 0.4822 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379826037.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:01 Heat of formation + Delta-G solvation = 75.409712 kcal Electronic energy + Delta-G solvation = -15020.301778 eV Core-core repulsion = 12626.166928 eV Total energy + Delta-G solvation = -2394.134850 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.24976 -36.33964 -33.53476 -32.31823 -30.70504 -30.39041 -28.73836 -25.59916 -23.89704 -22.33135 -21.85200 -19.72493 -17.96846 -16.90826 -16.04274 -15.16245 -14.97811 -14.60352 -14.36239 -13.90359 -13.70413 -13.09261 -12.78459 -12.60443 -12.24051 -12.03671 -11.30007 -11.03178 -10.90931 -10.70186 -10.54296 -10.22611 -10.07855 -9.99517 -9.61478 -9.01471 -8.64019 -8.27909 -8.24563 -7.77460 -5.87950 -3.86333 1.67290 1.68351 3.03863 3.13101 3.39934 3.46162 3.51662 4.09460 4.57128 4.61287 5.04712 5.15327 5.18422 5.27469 5.42737 5.49503 5.72637 5.77348 5.82455 5.86906 6.08881 6.20488 6.28915 6.36246 6.73689 6.75700 6.79193 6.94598 7.30486 7.44977 7.63356 7.87274 7.95110 7.98026 8.12505 8.55508 9.18448 9.75092 11.23814 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.018300 B = 0.008427 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.728194 B = 3321.728996 C = 4441.605560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.165 4.165 3 C 0.161 3.839 4 N -0.655 5.655 5 C 0.129 3.871 6 H 0.077 0.923 7 C 0.042 3.958 8 C -0.491 4.491 9 H 0.060 0.940 10 C 0.051 3.949 11 N -0.902 5.902 12 Si 0.890 3.110 13 H -0.284 1.284 14 H -0.289 1.289 15 H -0.274 1.274 16 C -0.095 4.095 17 C -0.116 4.116 18 C -0.120 4.120 19 C -0.136 4.136 20 C -0.122 4.122 21 C -0.117 4.117 22 H 0.214 0.786 23 H 0.045 0.955 24 H 0.093 0.907 25 H 0.337 0.663 26 H 0.021 0.979 27 H 0.020 0.980 28 H 0.258 0.742 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.899 -3.065 13.506 13.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.165 4.165 3 C 0.033 3.967 4 N -0.285 5.285 5 C 0.020 3.980 6 H 0.095 0.905 7 C 0.004 3.996 8 C -0.530 4.530 9 H 0.078 0.922 10 C -0.148 4.148 11 N -0.543 5.543 12 Si 0.719 3.281 13 H -0.210 1.210 14 H -0.215 1.215 15 H -0.199 1.199 16 C -0.097 4.097 17 C -0.134 4.134 18 C -0.138 4.138 19 C -0.154 4.154 20 C -0.140 4.140 21 C -0.136 4.136 22 H 0.231 0.769 23 H 0.063 0.937 24 H 0.111 0.889 25 H 0.156 0.844 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.939 -2.599 12.871 13.273 hybrid contribution -0.193 0.049 -0.010 0.199 sum -2.131 -2.550 12.861 13.283 Atomic orbital electron populations 1.24757 0.95799 1.01620 1.01644 1.23149 0.94450 0.99671 0.99242 1.18954 0.84367 1.00306 0.93113 1.60634 1.11026 1.16912 1.39911 1.21024 0.84475 0.94805 0.97692 0.90461 1.19102 0.96044 0.97836 0.86577 1.21112 1.32061 1.07634 0.92170 0.92218 1.24990 0.95668 0.96004 0.98172 1.69970 1.40333 1.32276 1.11685 0.86620 0.79287 0.82445 0.79782 1.20993 1.21514 1.19904 1.21172 0.96292 0.96336 0.95891 1.21004 1.00620 0.92881 0.98918 1.21074 0.96862 0.98995 0.96838 1.21025 0.97837 0.96415 1.00095 1.21082 0.99838 0.93505 0.99594 1.21102 0.96565 0.99523 0.96362 0.76946 0.93747 0.88913 0.84397 0.96096 0.96173 0.93287 0.86064 0.86549 0.86757 0.86618 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.14 19.25 29.55 0.57 -2.57 16 2 C -0.16 -2.67 13.65 -37.12 -0.51 -3.17 16 3 C 0.16 2.60 5.98 -6.61 -0.04 2.56 16 4 N -0.65 -12.36 5.90 -111.03 -0.66 -13.01 16 5 C 0.13 2.56 2.17 -68.86 -0.15 2.41 16 6 H 0.08 1.51 7.51 -51.93 -0.39 1.12 16 7 C 0.04 1.05 4.56 -27.88 -0.13 0.93 16 8 C -0.49 -13.78 8.84 -34.44 -0.30 -14.08 16 9 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 10 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 11 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 12 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 15 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 16 C -0.10 -1.65 4.78 -104.62 -0.50 -2.15 16 17 C -0.12 -1.89 8.96 -39.58 -0.35 -2.24 16 18 C -0.12 -1.70 10.05 -39.59 -0.40 -2.09 16 19 C -0.14 -1.80 10.05 -39.58 -0.40 -2.20 16 20 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 21 C -0.12 -1.83 9.67 -39.59 -0.38 -2.21 16 22 H 0.21 2.18 7.80 -54.10 -0.42 1.76 16 23 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 24 H 0.09 1.47 7.93 -51.93 -0.41 1.05 16 25 H 0.34 6.03 6.69 -39.29 -0.26 5.77 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.12 1.95 6.88 -52.49 -0.36 1.59 16 30 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 31 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.12 1.71 7.99 -52.48 -0.42 1.30 16 LS Contribution 292.91 15.07 4.41 4.41 Total: -1.00 -31.25 292.91 -7.95 -39.21 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -4.34 Total: 4.34 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -3.09 Total: -25.52 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.08 Total: -39.62 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.25 -7.95 -39.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379826037.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.615 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds