Wall clock time and date at job start Mon Mar 30 2020 03:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46817 * 2 1 4 4 S 1.81398 * 109.46554 * 180.02562 * 3 2 1 5 5 C 1.81401 * 102.99572 * 179.97438 * 4 3 2 6 6 C 1.53349 * 109.42095 * 295.12820 * 5 4 3 7 7 C 1.53196 * 109.15353 * 178.67488 * 6 5 4 8 8 N 1.46928 * 108.89135 * 54.57497 * 7 6 5 9 9 C 1.36936 * 120.63013 * 126.29699 * 8 7 6 10 10 H 1.07999 * 120.00022 * 331.83633 * 9 8 7 11 11 C 1.38813 * 120.00005 * 151.82709 * 9 8 7 12 12 N 1.31618 * 120.00004 * 343.09585 * 11 9 8 13 13 Si 1.86806 * 119.99953 * 163.09475 * 11 9 8 14 14 H 1.48494 * 109.47083 * 60.00061 * 13 11 9 15 15 H 1.48500 * 109.46851 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47024 * 300.00112 * 13 11 9 17 17 C 1.46924 * 118.73859 * 306.32337 * 8 7 6 18 18 C 1.53044 * 109.46147 * 175.00049 * 5 4 3 19 19 H 1.09004 * 109.47019 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.47080 * 300.00016 * 1 2 3 21 21 H 1.09001 * 109.47220 * 59.99967 * 1 2 3 22 22 H 1.08997 * 109.46977 * 240.00170 * 2 1 3 23 23 H 1.09001 * 109.46955 * 119.99552 * 2 1 3 24 24 H 1.08996 * 109.46776 * 59.99996 * 3 2 1 25 25 H 1.09002 * 109.46536 * 299.99803 * 3 2 1 26 26 H 1.09003 * 109.46194 * 55.02980 * 5 4 3 27 27 H 1.08998 * 109.68701 * 58.70977 * 6 5 4 28 28 H 1.09000 * 109.47234 * 298.51045 * 6 5 4 29 29 H 1.08996 * 109.58345 * 294.72319 * 7 6 5 30 30 H 1.08994 * 109.58644 * 174.43734 * 7 6 5 31 31 H 0.96996 * 119.99787 * 179.97438 * 12 11 9 32 32 H 1.09000 * 109.58664 * 173.39523 * 17 8 7 33 33 H 1.08996 * 109.58580 * 293.67452 * 17 8 7 34 34 H 1.08992 * 109.49619 * 61.43077 * 18 5 4 35 35 H 1.08999 * 109.52313 * 301.35091 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 16 3.8539 1.4425 -0.0008 5 6 4.2620 3.2100 -0.0015 6 6 3.7777 3.8446 -1.3108 7 6 4.0956 5.3431 -1.2908 8 7 5.5297 5.5217 -1.0260 9 6 6.3060 6.2738 -1.8667 10 1 6.0427 6.3623 -2.9103 11 6 7.4314 6.9228 -1.3774 12 7 7.5775 7.1000 -0.0814 13 14 8.7385 7.5445 -2.5584 14 1 8.1343 8.5286 -3.4919 15 1 9.8301 8.1954 -1.7904 16 1 9.2903 6.4029 -3.3316 17 6 6.1151 4.8774 0.1575 18 6 5.7774 3.3836 0.1236 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 3.7700 3.6967 0.8408 27 1 2.7018 3.7023 -1.4119 28 1 4.2878 3.3757 -2.1523 29 1 3.5159 5.8291 -0.5061 30 1 3.8446 5.7827 -2.2561 31 1 8.3641 7.5531 0.2604 32 1 7.1973 5.0076 0.1468 33 1 5.7020 5.3273 1.0603 34 1 6.2685 2.9188 -0.7312 35 1 6.1234 2.9114 1.0430 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383455792.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:13 Heat of formation + Delta-G solvation = -4.938249 kcal Electronic energy + Delta-G solvation = -14208.099562 eV Core-core repulsion = 11945.924514 eV Total energy + Delta-G solvation = -2262.175047 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -37.40705 -34.74862 -33.13901 -30.52229 -29.83570 -27.31656 -25.31860 -22.38084 -22.20079 -21.39767 -19.20009 -16.84285 -15.98261 -15.41233 -14.94320 -14.29459 -14.05120 -13.58106 -13.54721 -13.14590 -12.90137 -12.68214 -12.52832 -11.90432 -11.43876 -11.39239 -11.03120 -10.94652 -10.87491 -10.70343 -10.34715 -10.25929 -9.97124 -9.87493 -9.54949 -9.28131 -8.48733 -7.39355 -6.69062 -5.80770 -3.23484 1.98155 2.92849 3.38596 3.44231 3.45850 4.48579 4.76184 4.80911 5.15327 5.23143 5.33264 5.36577 5.39072 5.50525 5.57240 5.58514 5.80589 5.83781 5.95828 6.05337 6.09788 6.25209 6.35996 6.50933 6.59812 6.61942 6.72803 6.93036 7.31799 7.61086 7.77840 8.42900 9.18879 9.81874 10.38653 11.27841 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.064817 B = 0.005485 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.881818 B = 5103.383248 C = 5239.326607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.083 4.083 4 S -0.298 6.298 5 C -0.027 4.027 6 C -0.126 4.126 7 C 0.148 3.852 8 N -0.590 5.590 9 C -0.255 4.255 10 H 0.066 0.934 11 C 0.004 3.996 12 N -0.903 5.903 13 Si 0.904 3.096 14 H -0.282 1.282 15 H -0.290 1.290 16 H -0.283 1.283 17 C 0.176 3.824 18 C -0.120 4.120 19 H 0.057 0.943 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.017 0.983 30 H 0.057 0.943 31 H 0.255 0.745 32 H 0.093 0.907 33 H 0.020 0.980 34 H 0.063 0.937 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.407 -10.537 0.789 14.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C -0.231 4.231 4 S -0.067 6.067 5 C -0.155 4.155 6 C -0.167 4.167 7 C 0.019 3.981 8 N -0.312 5.312 9 C -0.385 4.385 10 H 0.083 0.917 11 C -0.195 4.195 12 N -0.547 5.547 13 Si 0.733 3.267 14 H -0.209 1.209 15 H -0.216 1.216 16 H -0.209 1.209 17 C 0.049 3.951 18 C -0.161 4.161 19 H 0.076 0.924 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.579 -11.340 0.893 14.871 hybrid contribution -0.161 1.381 -0.483 1.472 sum -9.740 -9.959 0.409 13.936 Atomic orbital electron populations 1.21773 0.95095 1.01789 1.02002 1.21262 0.95666 0.94526 1.03084 1.23332 0.94508 1.00729 1.04568 1.86746 1.06490 1.15459 1.98022 1.23194 1.01374 0.90054 1.00913 1.22380 0.98792 0.99345 0.96226 1.20914 0.86899 0.91505 0.98752 1.44060 1.02385 1.56539 1.28265 1.19155 1.05928 1.23165 0.90254 0.91659 1.25052 1.00671 0.97981 0.95779 1.70009 1.28697 1.44672 1.11360 0.86352 0.81485 0.78583 0.80257 1.20850 1.21585 1.20946 1.20818 1.00518 0.85293 0.88513 1.22115 0.90996 1.01772 1.01229 0.92390 0.92624 0.92560 0.91201 0.91284 0.90626 0.90301 0.90479 0.93271 0.91178 0.96494 0.92449 0.93496 0.88934 0.96156 0.91795 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.11 -1.11 5.94 -26.73 -0.16 -1.27 16 3 C -0.08 -1.03 5.64 37.16 0.21 -0.82 16 4 S -0.30 -4.74 21.15 -107.50 -2.27 -7.01 16 5 C -0.03 -0.48 2.62 -26.53 -0.07 -0.55 16 6 C -0.13 -2.26 5.31 -26.45 -0.14 -2.40 16 7 C 0.15 3.10 6.51 -3.71 -0.02 3.08 16 8 N -0.59 -14.85 2.99 -172.32 -0.52 -15.36 16 9 C -0.26 -7.03 9.58 -15.06 -0.14 -7.17 16 10 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 11 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 12 N -0.90 -26.13 11.20 55.49 0.62 -25.51 16 13 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 C 0.18 4.22 5.30 -3.71 -0.02 4.20 16 18 C -0.12 -2.40 5.37 -26.61 -0.14 -2.54 16 19 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 20 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 21 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.08 0.96 7.11 -51.92 -0.37 0.60 16 26 H 0.08 1.38 8.14 -51.92 -0.42 0.95 16 27 H 0.05 0.76 6.87 -51.93 -0.36 0.41 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.09 2.47 6.06 -51.93 -0.31 2.16 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 289.21 15.07 4.36 4.36 Total: -1.00 -28.60 289.21 -9.12 -37.72 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -6.07 Total: -2.53 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -0.21 Total: -8.30 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.11 Total: -40.87 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Atomic # 16 Polarization: -4.74 SS G_CDS: -2.27 Total: -7.01 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.60 -9.12 -37.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383455792.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.779 kcal (2) G-P(sol) polarization free energy of solvation -28.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds