Wall clock time and date at job start Mon Mar 30 2020 03:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46817 * 2 1 4 4 S 1.81398 * 109.46554 * 180.02562 * 3 2 1 5 5 C 1.81401 * 102.99572 * 179.97438 * 4 3 2 6 6 C 1.53349 * 109.42095 * 295.12820 * 5 4 3 7 7 C 1.53196 * 109.15353 * 178.67488 * 6 5 4 8 8 N 1.46928 * 108.89135 * 54.57497 * 7 6 5 9 9 C 1.36936 * 120.63013 * 126.29699 * 8 7 6 10 10 H 1.07999 * 120.00022 * 331.83633 * 9 8 7 11 11 C 1.38813 * 120.00005 * 151.82709 * 9 8 7 12 12 N 1.31618 * 120.00004 * 343.09585 * 11 9 8 13 13 Si 1.86806 * 119.99953 * 163.09475 * 11 9 8 14 14 H 1.48494 * 109.47083 * 60.00061 * 13 11 9 15 15 H 1.48500 * 109.46851 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47024 * 300.00112 * 13 11 9 17 17 C 1.46924 * 118.73859 * 306.32337 * 8 7 6 18 18 C 1.53044 * 109.46147 * 175.00049 * 5 4 3 19 19 H 1.09004 * 109.47019 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.47080 * 300.00016 * 1 2 3 21 21 H 1.09001 * 109.47220 * 59.99967 * 1 2 3 22 22 H 1.08997 * 109.46977 * 240.00170 * 2 1 3 23 23 H 1.09001 * 109.46955 * 119.99552 * 2 1 3 24 24 H 1.08996 * 109.46776 * 59.99996 * 3 2 1 25 25 H 1.09002 * 109.46536 * 299.99803 * 3 2 1 26 26 H 1.09003 * 109.46194 * 55.02980 * 5 4 3 27 27 H 1.08998 * 109.68701 * 58.70977 * 6 5 4 28 28 H 1.09000 * 109.47234 * 298.51045 * 6 5 4 29 29 H 1.08996 * 109.58345 * 294.72319 * 7 6 5 30 30 H 1.08994 * 109.58644 * 174.43734 * 7 6 5 31 31 H 0.96996 * 119.99787 * 179.97438 * 12 11 9 32 32 H 1.09000 * 109.58664 * 173.39523 * 17 8 7 33 33 H 1.08996 * 109.58580 * 293.67452 * 17 8 7 34 34 H 1.08992 * 109.49619 * 61.43077 * 18 5 4 35 35 H 1.08999 * 109.52313 * 301.35091 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 16 3.8539 1.4425 -0.0008 5 6 4.2620 3.2100 -0.0015 6 6 3.7777 3.8446 -1.3108 7 6 4.0956 5.3431 -1.2908 8 7 5.5297 5.5217 -1.0260 9 6 6.3060 6.2738 -1.8667 10 1 6.0427 6.3623 -2.9103 11 6 7.4314 6.9228 -1.3774 12 7 7.5775 7.1000 -0.0814 13 14 8.7385 7.5445 -2.5584 14 1 8.1343 8.5286 -3.4919 15 1 9.8301 8.1954 -1.7904 16 1 9.2903 6.4029 -3.3316 17 6 6.1151 4.8774 0.1575 18 6 5.7774 3.3836 0.1236 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 3.7700 3.6967 0.8408 27 1 2.7018 3.7023 -1.4119 28 1 4.2878 3.3757 -2.1523 29 1 3.5159 5.8291 -0.5061 30 1 3.8446 5.7827 -2.2561 31 1 8.3641 7.5531 0.2604 32 1 7.1973 5.0076 0.1468 33 1 5.7020 5.3273 1.0603 34 1 6.2685 2.9188 -0.7312 35 1 6.1234 2.9114 1.0430 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383455792.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:13 Heat of formation + Delta-G solvation = -19.532754 kcal Electronic energy + Delta-G solvation = -14208.732427 eV Core-core repulsion = 11945.924514 eV Total energy + Delta-G solvation = -2262.807912 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.14494 -35.57127 -35.03712 -32.37705 -31.59876 -28.18089 -27.24779 -24.00678 -23.91527 -22.39350 -20.90199 -18.77834 -17.33453 -16.83149 -16.26985 -15.83788 -15.51572 -15.39263 -14.87992 -14.58275 -14.43345 -14.15203 -13.52924 -13.27212 -13.08314 -12.88698 -12.58767 -12.42912 -12.18130 -12.12650 -11.96287 -11.77763 -11.66421 -11.55196 -11.20256 -10.71323 -10.54633 -8.74742 -8.61286 -7.89628 -5.35596 0.74687 1.46894 1.49838 1.56382 1.69270 2.50427 3.26099 3.63148 3.80171 3.84924 3.93126 3.96492 4.28977 4.38434 4.43775 4.56449 4.62118 4.66765 4.77012 4.86416 4.87790 4.94749 4.98499 5.08606 5.15258 5.21109 5.28876 5.39224 5.43825 5.61416 5.67429 6.36738 7.12031 7.82160 8.34415 9.16878 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.064817 B = 0.005485 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.881818 B = 5103.383248 C = 5239.326607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C -0.075 4.075 4 S -0.310 6.310 5 C -0.026 4.026 6 C -0.111 4.111 7 C 0.143 3.857 8 N -0.610 5.610 9 C -0.269 4.269 10 H 0.067 0.933 11 C -0.047 4.047 12 N -0.934 5.934 13 Si 0.968 3.032 14 H -0.274 1.274 15 H -0.293 1.293 16 H -0.279 1.279 17 C 0.184 3.816 18 C -0.107 4.107 19 H 0.070 0.930 20 H 0.059 0.941 21 H 0.059 0.941 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.018 0.982 30 H 0.059 0.941 31 H 0.251 0.749 32 H 0.059 0.941 33 H 0.002 0.998 34 H 0.052 0.948 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.981 -11.729 0.161 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.223 4.223 4 S -0.079 6.079 5 C -0.154 4.154 6 C -0.152 4.152 7 C 0.016 3.984 8 N -0.333 5.333 9 C -0.399 4.399 10 H 0.085 0.915 11 C -0.243 4.243 12 N -0.580 5.580 13 Si 0.796 3.204 14 H -0.199 1.199 15 H -0.219 1.219 16 H -0.205 1.205 17 C 0.056 3.944 18 C -0.147 4.147 19 H 0.089 0.911 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.102 0.898 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.036 0.964 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.020 0.980 34 H 0.071 0.929 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.174 -12.545 0.253 16.802 hybrid contribution 0.226 1.696 -0.269 1.732 sum -10.948 -10.849 -0.016 15.413 Atomic orbital electron populations 1.21745 0.93196 1.02818 1.02455 1.21265 0.97112 0.92969 1.02915 1.23485 0.91067 1.02403 1.05316 1.86797 1.10367 1.12689 1.98070 1.22968 0.99495 0.92074 1.00866 1.22211 1.00583 0.96571 0.95852 1.21068 0.84640 0.93890 0.98773 1.44310 1.04123 1.56720 1.28159 1.19492 1.06576 1.22991 0.90798 0.91517 1.25805 1.02586 0.98694 0.97220 1.70162 1.29025 1.45786 1.13029 0.85340 0.78745 0.78083 0.78281 1.19944 1.21886 1.20517 1.20569 0.98320 0.87859 0.87627 1.21835 0.93058 0.98523 1.01293 0.91144 0.92149 0.92144 0.91475 0.91431 0.89808 0.89584 0.90380 0.90112 0.92159 0.96424 0.92208 0.93971 0.92311 0.97988 0.92899 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.91 71.98 0.71 -1.19 16 2 C -0.10 -1.84 5.94 30.60 0.18 -1.66 16 3 C -0.07 -1.62 5.64 71.98 0.41 -1.21 16 4 S -0.31 -9.19 21.15 -56.49 -1.19 -10.39 16 5 C -0.03 -0.87 2.62 30.73 0.08 -0.79 16 6 C -0.11 -3.78 5.31 30.78 0.16 -3.62 16 7 C 0.14 5.94 6.51 86.36 0.56 6.50 16 8 N -0.61 -31.05 2.99 -699.11 -2.09 -33.14 16 9 C -0.27 -14.93 9.58 84.03 0.81 -14.13 16 10 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 11 C -0.05 -2.66 4.92 84.86 0.42 -2.25 16 12 N -0.93 -55.50 11.20 21.65 0.24 -55.26 16 13 Si 0.97 45.03 29.59 68.60 2.03 47.06 16 14 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 15 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 17 C 0.18 9.04 5.30 86.36 0.46 9.50 16 18 C -0.11 -4.25 5.37 30.67 0.16 -4.09 16 19 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 20 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 21 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 25 H 0.09 1.78 7.11 -2.39 -0.02 1.76 16 26 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.08 2.24 6.87 -2.39 -0.02 2.23 16 28 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 31 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 32 H 0.06 3.27 6.06 -2.39 -0.01 3.25 16 33 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -61.47 289.21 3.96 -57.51 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 1.03 Total: 7.15 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 3.95 Total: -12.93 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -1.85 Total: -88.40 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: -9.19 SS G_CDS: -1.19 Total: -10.39 kcal Total: -61.47 3.96 -57.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383455792.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.975 kcal (2) G-P(sol) polarization free energy of solvation -61.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds