Wall clock time and date at job start Mon Mar 30 2020 03:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47180 * 2 1 4 4 S 1.81404 * 109.47324 * 120.00246 * 2 1 3 5 5 C 1.81401 * 102.99793 * 67.00877 * 4 2 1 6 6 H 1.09003 * 110.76472 * 303.40018 * 5 4 2 7 7 C 1.55134 * 110.70590 * 180.19961 * 5 4 2 8 8 C 1.54904 * 101.65484 * 205.96317 * 7 5 4 9 9 N 1.47844 * 104.79257 * 37.07257 * 8 7 5 10 10 C 1.46908 * 110.99606 * 213.63916 * 9 8 7 11 11 C 1.50699 * 109.46722 * 290.83904 * 10 9 8 12 12 H 1.07998 * 120.00375 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99807 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00440 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00066 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47199 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46937 * 119.99676 * 15 13 11 18 18 H 1.48503 * 109.46901 * 239.99511 * 15 13 11 19 19 C 1.47445 * 108.56967 * 335.89787 * 9 8 7 20 20 H 1.09005 * 109.47228 * 294.67672 * 1 2 3 21 21 H 1.09002 * 109.47330 * 54.67196 * 1 2 3 22 22 H 1.08997 * 109.47397 * 174.67078 * 1 2 3 23 23 H 1.08997 * 109.47268 * 240.00615 * 2 1 3 24 24 H 1.09002 * 109.46919 * 179.97438 * 3 2 1 25 25 H 1.08990 * 109.47656 * 300.00089 * 3 2 1 26 26 H 1.09003 * 109.46991 * 60.00662 * 3 2 1 27 27 H 1.09009 * 110.98766 * 324.05714 * 7 5 4 28 28 H 1.09002 * 110.99295 * 87.82910 * 7 5 4 29 29 H 1.08997 * 110.37393 * 278.24306 * 8 7 5 30 30 H 1.09004 * 110.37057 * 155.89451 * 8 7 5 31 31 H 1.09003 * 109.47024 * 170.84268 * 10 9 8 32 32 H 1.08992 * 109.47214 * 50.84016 * 10 9 8 33 33 H 0.96994 * 120.00541 * 180.02562 * 14 13 11 34 34 H 1.09008 * 109.88665 * 120.39679 * 19 9 8 35 35 H 1.08999 * 109.89465 * 241.58914 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8552 1.4811 5 6 1.6198 -2.5717 1.1999 6 1 0.5429 -2.6313 1.0421 7 6 2.0513 -3.4750 2.3851 8 6 2.1584 -4.8602 1.7000 9 7 2.7046 -4.5753 0.3560 10 6 2.1635 -5.5091 -0.6407 11 6 2.7149 -6.8886 -0.3879 12 1 3.3985 -7.0552 0.4315 13 6 2.3468 -7.9382 -1.2026 14 7 1.5140 -7.7357 -2.2001 15 14 3.0297 -9.6484 -0.8888 16 1 3.9384 -9.6108 0.2851 17 1 1.9105 -10.5865 -0.6192 18 1 3.7834 -10.1072 -2.0832 19 6 2.3810 -3.1807 0.0036 20 1 -0.3634 0.4291 0.9339 21 1 -0.3634 0.5943 -0.8384 22 1 -0.3634 -1.0232 -0.0954 23 1 1.8933 -0.5137 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 3.0159 -3.1610 2.7842 28 1 1.2916 -3.4829 3.1667 29 1 1.1739 -5.3210 1.6198 30 1 2.8371 -5.5070 2.2561 31 1 2.4504 -5.1807 -1.6397 32 1 1.0765 -5.5327 -0.5642 33 1 1.2547 -8.4741 -2.7730 34 1 3.2991 -2.6209 -0.1755 35 1 1.7516 -3.1594 -0.8861 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394955180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:13 Heat of formation + Delta-G solvation = -12.388419 kcal Electronic energy + Delta-G solvation = -14131.120804 eV Core-core repulsion = 11868.622693 eV Total energy + Delta-G solvation = -2262.498111 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.14436 -34.80566 -33.11003 -30.92436 -28.58057 -27.35851 -26.32015 -22.61417 -22.01135 -20.69366 -19.94699 -16.63966 -16.29109 -15.63623 -15.32518 -14.52752 -14.25145 -13.63747 -13.43600 -13.19962 -12.80314 -12.41198 -12.38013 -11.92383 -11.67856 -11.46635 -11.36479 -11.23685 -11.02792 -10.67718 -10.59343 -10.53761 -10.27425 -9.88792 -9.61827 -9.15403 -8.45886 -7.58244 -7.26197 -6.04342 -4.05792 1.78660 2.66469 3.30477 3.37850 3.43296 4.42211 4.71170 4.76134 4.80494 4.88638 5.18145 5.26883 5.33284 5.35403 5.44968 5.57672 5.60954 5.73318 5.79223 5.83616 5.99786 6.03365 6.04440 6.14720 6.39643 6.56587 6.60641 7.15090 7.27325 7.79055 8.01030 8.15910 8.50096 9.02711 9.59025 11.06717 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.050160 B = 0.005525 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.082170 B = 5066.530602 C = 5360.466494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 C -0.131 4.131 4 S -0.255 6.255 5 C -0.073 4.073 6 H 0.086 0.914 7 C -0.107 4.107 8 C 0.062 3.938 9 N -0.524 5.524 10 C 0.187 3.813 11 C -0.506 4.506 12 H 0.064 0.936 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.898 3.102 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.051 3.949 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.056 0.944 23 H 0.088 0.912 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.029 0.971 32 H -0.008 1.008 33 H 0.261 0.739 34 H 0.076 0.924 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.803 14.455 5.528 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.193 4.193 3 C -0.189 4.189 4 S -0.026 6.026 5 C -0.203 4.203 6 H 0.105 0.895 7 C -0.146 4.146 8 C -0.068 4.068 9 N -0.249 5.249 10 C 0.062 3.938 11 C -0.544 4.544 12 H 0.082 0.918 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.726 3.274 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.080 4.080 20 H 0.084 0.916 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.107 0.893 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.047 0.953 32 H 0.010 0.990 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.799 14.737 6.240 16.023 hybrid contribution -1.343 -1.435 -1.131 2.267 sum -2.142 13.302 5.109 14.409 Atomic orbital electron populations 1.22086 0.93523 1.02415 1.02550 1.23057 0.98604 0.99253 0.98362 1.21595 1.01803 0.93153 1.02341 1.86589 1.78046 1.06718 1.31255 1.24503 1.02153 0.92668 1.00983 0.89539 1.22635 1.01741 0.94687 0.95526 1.22859 0.98930 0.94360 0.90623 1.63724 1.57615 1.00653 1.02905 1.19963 0.92868 0.90860 0.90157 1.21188 1.26938 0.92179 1.14120 0.91778 1.24998 0.95231 0.99317 0.95109 1.69963 1.34235 1.31976 1.17840 0.86434 0.78774 0.83944 0.78249 1.19587 1.21107 1.20989 1.23221 0.98122 0.91901 0.94732 0.91572 0.91943 0.92450 0.89339 0.91674 0.91407 0.91960 0.90256 0.90888 0.93596 0.90413 0.95299 0.99039 0.92976 0.90546 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.07 37.16 0.34 -1.21 16 2 C -0.06 -0.74 3.26 -26.73 -0.09 -0.83 16 3 C -0.13 -1.24 9.20 37.16 0.34 -0.90 16 4 S -0.25 -3.56 20.41 -107.50 -2.19 -5.75 16 5 C -0.07 -1.15 3.25 -24.91 -0.08 -1.23 16 6 H 0.09 1.34 7.31 -51.93 -0.38 0.96 16 7 C -0.11 -1.67 6.54 -24.60 -0.16 -1.83 16 8 C 0.06 1.19 6.14 -2.30 -0.01 1.18 16 9 N -0.52 -11.57 5.15 -232.68 -1.20 -12.77 16 10 C 0.19 4.93 4.33 -4.97 -0.02 4.91 16 11 C -0.51 -14.35 8.80 -34.44 -0.30 -14.65 16 12 H 0.06 1.81 7.76 -52.49 -0.41 1.40 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 15 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 C 0.05 0.94 6.18 -2.83 -0.02 0.92 16 20 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.66 7.22 -51.93 -0.37 0.29 16 23 H 0.09 1.09 7.96 -51.93 -0.41 0.67 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.23 8.04 -51.92 -0.42 0.82 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.93 7.62 -51.93 -0.40 0.54 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 32 H -0.01 -0.23 7.85 -51.93 -0.41 -0.63 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.08 1.39 7.78 -51.92 -0.40 0.99 16 35 H 0.05 0.91 7.55 -51.93 -0.39 0.51 16 LS Contribution 294.37 15.07 4.44 4.44 Total: -1.00 -29.66 294.37 -9.45 -39.11 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -6.10 Total: -3.39 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -0.10 Total: -12.20 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: -0.46 Total: -38.92 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -2.19 Total: -5.75 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.66 -9.45 -39.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394955180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.720 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds