Wall clock time and date at job start Mon Mar 30 2020 03:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47198 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47200 * 179.97438 * 199.61479 * 3 2 1 5 5 N 1.46901 * 109.47132 * 171.19702 * 4 3 2 6 6 C 1.46891 * 110.99909 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46919 * 179.97438 * 6 5 4 8 8 C 1.38641 * 119.74978 * 269.72424 * 7 6 5 9 9 C 1.37617 * 120.24689 * 179.72013 * 8 7 6 10 10 C 1.40708 * 119.74682 * 0.57331 * 9 8 7 11 11 C 1.41398 * 120.24546 * 179.67843 * 10 9 8 12 12 H 1.08002 * 119.99972 * 155.31161 * 11 10 9 13 13 C 1.39945 * 119.99831 * 335.31258 * 11 10 9 14 14 N 1.30817 * 120.00179 * 342.23322 * 13 11 10 15 15 Si 1.86801 * 119.99573 * 162.22986 * 13 11 10 16 16 H 1.48503 * 109.46856 * 94.66946 * 15 13 11 17 17 H 1.48501 * 109.46918 * 214.66692 * 15 13 11 18 18 H 1.48500 * 109.47372 * 334.66822 * 15 13 11 19 19 C 1.40713 * 119.51152 * 359.70582 * 10 9 8 20 20 C 1.37616 * 119.74766 * 359.97438 * 19 10 9 21 21 H 1.09006 * 109.46724 * 169.19343 * 1 2 3 22 22 H 1.09003 * 109.47342 * 289.18965 * 1 2 3 23 23 H 1.08997 * 109.47668 * 49.19216 * 1 2 3 24 24 H 1.08993 * 109.47275 * 51.19545 * 4 3 2 25 25 H 1.09005 * 109.46756 * 291.19110 * 4 3 2 26 26 H 1.00904 * 110.99948 * 56.03775 * 5 4 3 27 27 H 1.08995 * 109.47509 * 299.99636 * 6 5 4 28 28 H 1.09002 * 109.47246 * 59.99973 * 6 5 4 29 29 H 1.08003 * 119.87265 * 359.97438 * 8 7 6 30 30 H 1.08004 * 120.12312 * 180.27968 * 9 8 7 31 31 H 0.97004 * 120.00149 * 179.97438 * 14 13 11 32 32 H 1.08002 * 120.12805 * 179.97438 * 19 10 9 33 33 H 1.07995 * 119.88350 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0002 5 7 4.6065 1.3709 -0.2117 6 6 6.0748 1.4110 -0.2168 7 6 6.5379 2.8281 -0.4368 8 6 6.7556 3.2884 -1.7263 9 6 7.1730 4.5823 -1.9393 10 6 7.3903 5.4354 -0.8417 11 6 7.8257 6.7648 -1.0480 12 1 7.6196 7.5219 -0.3059 13 6 8.5236 7.0995 -2.2140 14 7 9.0755 6.1603 -2.9383 15 14 8.6668 8.8873 -2.7360 16 1 9.9425 9.4511 -2.2260 17 1 8.6451 8.9734 -4.2183 18 1 7.5268 9.6587 -2.1786 19 6 7.1717 4.9557 0.4630 20 6 6.7480 3.6601 0.6521 21 1 -0.3633 -1.0095 -0.1927 22 1 -0.3634 0.3378 0.9706 23 1 -0.3634 0.6716 -0.7778 24 1 4.4820 -0.6418 -0.8005 25 1 4.4814 -0.3694 0.9585 26 1 4.2302 2.0004 0.4814 27 1 6.4516 1.0497 0.7400 28 1 6.4528 0.7770 -1.0189 29 1 6.5932 2.6302 -2.5671 30 1 7.3377 4.9402 -2.9450 31 1 9.5590 6.3922 -3.7467 32 1 7.3358 5.6018 1.3127 33 1 6.5791 3.2898 1.6524 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398982584.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:07 Heat of formation + Delta-G solvation = 54.828692 kcal Electronic energy + Delta-G solvation = -14274.979957 eV Core-core repulsion = 11879.952648 eV Total energy + Delta-G solvation = -2395.027310 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -37.82672 -36.10159 -34.04825 -33.26231 -30.62536 -29.27691 -28.72948 -26.54002 -24.45567 -22.71161 -20.93878 -19.90548 -17.28066 -16.90812 -15.41547 -15.27332 -14.59735 -14.45081 -13.90542 -13.77327 -13.56807 -13.36626 -13.25230 -12.48975 -12.36780 -11.92194 -11.69683 -11.49711 -11.06256 -10.98373 -10.49966 -10.40548 -9.90455 -9.74457 -9.57085 -9.35550 -9.11278 -8.10413 -7.42203 -7.29552 -6.75102 -4.33609 2.61741 2.78771 2.82967 3.07673 3.10355 3.12302 3.21473 3.94204 4.25681 4.57385 4.93152 5.37285 5.42995 5.53520 5.54845 5.61448 5.75617 5.82481 5.89789 5.94244 6.24326 6.37255 6.46681 6.97636 7.08578 7.29700 7.33090 7.37483 7.62626 7.67545 7.72574 7.89919 8.07579 8.16393 8.31970 8.66479 8.91184 8.99784 10.19546 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.041501 B = 0.004392 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.528583 B = 6373.696631 C = 6572.934072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.196 4.196 3 C -0.174 4.174 4 C 0.167 3.833 5 N -0.681 5.681 6 C 0.124 3.876 7 C -0.215 4.215 8 C -0.078 4.078 9 C -0.168 4.168 10 C 0.113 3.887 11 C -0.463 4.463 12 H 0.077 0.923 13 C 0.076 3.924 14 N -0.792 5.792 15 Si 0.907 3.093 16 H -0.271 1.271 17 H -0.275 1.275 18 H -0.260 1.260 19 C -0.228 4.228 20 C -0.085 4.085 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.048 0.952 26 H 0.343 0.657 27 H 0.022 0.978 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.280 0.720 32 H 0.090 0.910 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.269 -7.791 3.053 11.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.198 4.198 3 C -0.174 4.174 4 C 0.040 3.960 5 N -0.313 5.313 6 C -0.003 4.003 7 C -0.217 4.217 8 C -0.097 4.097 9 C -0.187 4.187 10 C 0.111 3.889 11 C -0.493 4.493 12 H 0.095 0.905 13 C -0.142 4.142 14 N -0.418 5.418 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.200 1.200 18 H -0.184 1.184 19 C -0.247 4.247 20 C -0.103 4.103 21 H 0.095 0.905 22 H 0.095 0.905 23 H 0.098 0.902 24 H 0.109 0.891 25 H 0.065 0.935 26 H 0.162 0.838 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.135 0.865 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.143 -7.876 2.155 11.532 hybrid contribution 0.380 0.667 0.636 0.997 sum -7.763 -7.209 2.791 10.956 Atomic orbital electron populations 1.18810 0.84821 1.02701 1.02909 1.22364 0.93884 1.00862 1.02665 1.22335 0.93537 1.01221 1.00332 1.18850 0.83978 0.92867 1.00352 1.60678 1.09500 1.05480 1.55655 1.20592 0.85111 0.95950 0.98653 1.18864 1.14299 0.94773 0.93774 1.20507 0.98808 0.95771 0.94594 1.21309 1.04526 0.93514 0.99348 1.17626 0.87751 0.92876 0.90674 1.19600 1.31265 0.95103 1.03325 0.90496 1.25910 0.93194 0.99488 0.95561 1.69828 1.23899 1.34788 1.13254 0.86331 0.79535 0.82627 0.78414 1.19615 1.20024 1.18425 1.20930 1.12140 0.95370 0.96303 1.20361 0.99935 0.94342 0.95698 0.90516 0.90467 0.90207 0.89119 0.93470 0.83828 0.96025 0.91627 0.89417 0.86533 0.90895 0.89134 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.32 10.32 34.37 0.35 0.03 16 2 C -0.20 -2.64 14.13 -37.12 -0.52 -3.17 16 3 C -0.17 -2.55 13.60 -37.12 -0.50 -3.06 16 4 C 0.17 2.32 6.16 -6.61 -0.04 2.28 16 5 N -0.68 -11.38 6.46 -118.18 -0.76 -12.15 16 6 C 0.12 2.19 5.80 -4.98 -0.03 2.16 16 7 C -0.22 -4.71 5.42 -104.32 -0.56 -5.27 16 8 C -0.08 -1.85 9.67 -39.66 -0.38 -2.24 16 9 C -0.17 -4.42 8.70 -38.88 -0.34 -4.76 16 10 C 0.11 3.06 5.57 -106.83 -0.60 2.46 16 11 C -0.46 -12.44 9.05 -37.74 -0.34 -12.78 16 12 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 13 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 14 N -0.79 -20.65 10.97 55.55 0.61 -20.04 16 15 Si 0.91 18.77 29.59 -169.99 -5.03 13.74 16 16 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 17 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 18 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 19 C -0.23 -5.65 9.80 -38.87 -0.38 -6.03 16 20 C -0.08 -1.89 9.67 -39.66 -0.38 -2.28 16 21 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.34 5.79 8.70 -39.29 -0.34 5.45 16 27 H 0.02 0.35 8.08 -51.93 -0.42 -0.07 16 28 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 29 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 30 H 0.12 3.18 6.18 -52.48 -0.32 2.85 16 31 H 0.28 6.62 8.30 -40.82 -0.34 6.29 16 32 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.08 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 293.50 15.07 4.42 4.42 Total: -1.00 -28.45 293.50 -9.02 -37.47 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -4.44 Total: 7.36 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: -3.82 Total: -30.80 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: -0.15 Total: -32.19 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.45 -9.02 -37.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398982584.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.296 kcal (2) G-P(sol) polarization free energy of solvation -28.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds