Wall clock time and date at job start Mon Mar 30 2020 03:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47198 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47200 * 179.97438 * 199.61479 * 3 2 1 5 5 N 1.46901 * 109.47132 * 171.19702 * 4 3 2 6 6 C 1.46891 * 110.99909 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46919 * 179.97438 * 6 5 4 8 8 C 1.38641 * 119.74978 * 269.72424 * 7 6 5 9 9 C 1.37617 * 120.24689 * 179.72013 * 8 7 6 10 10 C 1.40708 * 119.74682 * 0.57331 * 9 8 7 11 11 C 1.41398 * 120.24546 * 179.67843 * 10 9 8 12 12 H 1.08002 * 119.99972 * 155.31161 * 11 10 9 13 13 C 1.39945 * 119.99831 * 335.31258 * 11 10 9 14 14 N 1.30817 * 120.00179 * 342.23322 * 13 11 10 15 15 Si 1.86801 * 119.99573 * 162.22986 * 13 11 10 16 16 H 1.48503 * 109.46856 * 94.66946 * 15 13 11 17 17 H 1.48501 * 109.46918 * 214.66692 * 15 13 11 18 18 H 1.48500 * 109.47372 * 334.66822 * 15 13 11 19 19 C 1.40713 * 119.51152 * 359.70582 * 10 9 8 20 20 C 1.37616 * 119.74766 * 359.97438 * 19 10 9 21 21 H 1.09006 * 109.46724 * 169.19343 * 1 2 3 22 22 H 1.09003 * 109.47342 * 289.18965 * 1 2 3 23 23 H 1.08997 * 109.47668 * 49.19216 * 1 2 3 24 24 H 1.08993 * 109.47275 * 51.19545 * 4 3 2 25 25 H 1.09005 * 109.46756 * 291.19110 * 4 3 2 26 26 H 1.00904 * 110.99948 * 56.03775 * 5 4 3 27 27 H 1.08995 * 109.47509 * 299.99636 * 6 5 4 28 28 H 1.09002 * 109.47246 * 59.99973 * 6 5 4 29 29 H 1.08003 * 119.87265 * 359.97438 * 8 7 6 30 30 H 1.08004 * 120.12312 * 180.27968 * 9 8 7 31 31 H 0.97004 * 120.00149 * 179.97438 * 14 13 11 32 32 H 1.08002 * 120.12805 * 179.97438 * 19 10 9 33 33 H 1.07995 * 119.88350 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0002 5 7 4.6065 1.3709 -0.2117 6 6 6.0748 1.4110 -0.2168 7 6 6.5379 2.8281 -0.4368 8 6 6.7556 3.2884 -1.7263 9 6 7.1730 4.5823 -1.9393 10 6 7.3903 5.4354 -0.8417 11 6 7.8257 6.7648 -1.0480 12 1 7.6196 7.5219 -0.3059 13 6 8.5236 7.0995 -2.2140 14 7 9.0755 6.1603 -2.9383 15 14 8.6668 8.8873 -2.7360 16 1 9.9425 9.4511 -2.2260 17 1 8.6451 8.9734 -4.2183 18 1 7.5268 9.6587 -2.1786 19 6 7.1717 4.9557 0.4630 20 6 6.7480 3.6601 0.6521 21 1 -0.3633 -1.0095 -0.1927 22 1 -0.3634 0.3378 0.9706 23 1 -0.3634 0.6716 -0.7778 24 1 4.4820 -0.6418 -0.8005 25 1 4.4814 -0.3694 0.9585 26 1 4.2302 2.0004 0.4814 27 1 6.4516 1.0497 0.7400 28 1 6.4528 0.7770 -1.0189 29 1 6.5932 2.6302 -2.5671 30 1 7.3377 4.9402 -2.9450 31 1 9.5590 6.3922 -3.7467 32 1 7.3358 5.6018 1.3127 33 1 6.5791 3.2898 1.6524 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398982584.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:06 Heat of formation + Delta-G solvation = 39.088103 kcal Electronic energy + Delta-G solvation = -14275.662520 eV Core-core repulsion = 11879.952648 eV Total energy + Delta-G solvation = -2395.709873 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.60480 -37.45861 -35.63520 -34.55832 -32.21778 -31.14802 -29.97652 -28.01997 -25.87349 -24.19454 -22.83705 -21.68668 -19.21283 -18.06878 -17.15406 -16.54356 -15.96082 -15.82973 -15.57405 -15.26052 -14.79109 -14.35684 -14.27538 -14.12715 -13.79107 -13.55949 -13.25588 -13.18743 -12.78250 -12.69795 -12.25361 -12.10489 -11.45297 -11.24843 -11.02689 -10.85627 -10.69639 -9.39195 -9.33799 -9.15938 -8.63334 -6.32758 0.93979 1.16344 1.37876 1.47103 1.53699 1.70301 1.77231 2.21189 2.71631 3.31354 3.60273 3.85646 4.26748 4.32996 4.49410 4.52059 4.61649 4.67382 4.80106 4.82533 4.85764 4.86897 5.07624 5.09577 5.16971 5.39379 5.47543 5.72430 5.92821 6.08928 6.12741 6.26112 6.40040 6.42506 6.71722 6.72217 6.95211 7.05436 8.33970 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.041501 B = 0.004392 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.528583 B = 6373.696631 C = 6572.934072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 C -0.193 4.193 3 C -0.219 4.219 4 C 0.172 3.828 5 N -0.695 5.695 6 C 0.131 3.869 7 C -0.203 4.203 8 C -0.086 4.086 9 C -0.193 4.193 10 C 0.080 3.920 11 C -0.504 4.504 12 H 0.074 0.926 13 C 0.034 3.966 14 N -0.826 5.826 15 Si 0.982 3.018 16 H -0.262 1.262 17 H -0.266 1.266 18 H -0.260 1.260 19 C -0.244 4.244 20 C -0.084 4.084 21 H 0.098 0.902 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.066 0.934 26 H 0.341 0.659 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.288 0.712 32 H 0.096 0.904 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.352 -8.716 3.639 13.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.194 4.194 3 C -0.220 4.220 4 C 0.045 3.955 5 N -0.326 5.326 6 C 0.004 3.996 7 C -0.205 4.205 8 C -0.105 4.105 9 C -0.212 4.212 10 C 0.077 3.923 11 C -0.533 4.533 12 H 0.092 0.908 13 C -0.180 4.180 14 N -0.452 5.452 15 Si 0.802 3.198 16 H -0.186 1.186 17 H -0.190 1.190 18 H -0.183 1.183 19 C -0.264 4.264 20 C -0.103 4.103 21 H 0.116 0.884 22 H 0.112 0.888 23 H 0.107 0.893 24 H 0.117 0.883 25 H 0.084 0.916 26 H 0.159 0.841 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.232 -8.824 2.751 13.064 hybrid contribution 0.604 0.783 0.517 1.116 sum -8.628 -8.041 3.268 12.239 Atomic orbital electron populations 1.19095 0.82116 1.04353 1.04185 1.23425 0.95290 0.99270 1.01429 1.22717 0.94365 1.03003 1.01900 1.18861 0.83862 0.91181 1.01635 1.60551 1.08636 1.07325 1.56102 1.20499 0.85959 0.92992 1.00164 1.19330 1.11696 0.96795 0.92660 1.20756 0.98435 0.95047 0.96272 1.21268 1.06509 0.94933 0.98500 1.17973 0.88921 0.93563 0.91798 1.19848 1.33211 0.95453 1.04836 0.90778 1.26767 0.92174 1.04104 0.94972 1.69881 1.24482 1.36995 1.13837 0.85204 0.79640 0.76658 0.78257 1.18618 1.19005 1.18335 1.21162 1.12694 0.96789 0.95752 1.20712 0.98600 0.93365 0.97587 0.88385 0.88821 0.89294 0.88279 0.91642 0.84098 0.93894 0.90716 0.88028 0.88468 0.90170 0.88599 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.63 10.32 70.18 0.72 0.09 16 2 C -0.19 -4.80 14.13 31.12 0.44 -4.36 16 3 C -0.22 -6.07 13.60 31.13 0.42 -5.65 16 4 C 0.17 4.38 6.16 84.50 0.52 4.90 16 5 N -0.69 -21.71 6.46 -527.81 -3.41 -25.12 16 6 C 0.13 4.29 5.80 85.56 0.50 4.78 16 7 C -0.20 -8.60 5.42 -19.67 -0.11 -8.71 16 8 C -0.09 -4.12 9.67 22.22 0.21 -3.90 16 9 C -0.19 -10.50 8.70 22.73 0.20 -10.31 16 10 C 0.08 4.45 5.57 -21.29 -0.12 4.33 16 11 C -0.50 -28.06 9.05 23.46 0.21 -27.84 16 12 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 13 C 0.03 1.79 5.14 85.26 0.44 2.23 16 14 N -0.83 -44.35 10.97 21.83 0.24 -44.11 16 15 Si 0.98 39.08 29.59 68.60 2.03 41.11 16 16 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 17 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 18 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 19 C -0.24 -12.25 9.80 22.73 0.22 -12.03 16 20 C -0.08 -3.65 9.67 22.22 0.21 -3.44 16 21 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 22 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.34 10.84 8.70 -89.69 -0.78 10.06 16 27 H 0.04 1.24 8.08 -2.39 -0.02 1.22 16 28 H 0.07 2.32 8.08 -2.39 -0.02 2.30 16 29 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 30 H 0.10 5.57 6.18 -2.91 -0.02 5.55 16 31 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 32 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 33 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -62.65 293.50 3.06 -59.59 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.32 Total: 28.43 kcal Atomic # 6 Polarization: -63.78 SS G_CDS: 3.88 Total: -59.90 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -3.17 Total: -69.22 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -62.65 3.06 -59.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398982584.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.674 kcal (2) G-P(sol) polarization free energy of solvation -62.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds