Wall clock time and date at job start Mon Mar 30 2020 02:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 115.54521 * 2 1 4 4 O 1.21285 * 120.00043 * 214.32927 * 3 2 1 5 5 N 1.34779 * 120.00162 * 34.33356 * 3 2 1 6 6 C 1.46497 * 120.00021 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47333 * 179.97438 * 6 5 3 8 8 C 1.53002 * 109.47535 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.46997 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99717 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.52994 * 117.52076 * 145.70386 * 2 1 3 18 18 C 1.53001 * 117.50112 * 214.33685 * 2 1 3 19 19 H 1.08994 * 117.50040 * 144.97039 * 18 2 1 20 20 F 1.39908 * 117.49787 * 359.96959 * 18 2 1 21 21 H 1.08992 * 109.47406 * 85.58182 * 1 2 3 22 22 H 1.09004 * 109.46362 * 205.57894 * 1 2 3 23 23 H 1.08991 * 109.47226 * 325.57548 * 1 2 3 24 24 H 0.96994 * 119.99487 * 0.02562 * 5 3 2 25 25 H 1.09005 * 109.46979 * 60.00120 * 6 5 3 26 26 H 1.09004 * 109.47608 * 300.00243 * 6 5 3 27 27 H 1.09005 * 109.46889 * 60.00189 * 7 6 5 28 28 H 1.09002 * 109.47401 * 300.00278 * 7 6 5 29 29 H 1.09005 * 109.46767 * 60.00250 * 8 7 6 30 30 H 1.09002 * 109.47113 * 300.00590 * 8 7 6 31 31 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 32 32 H 1.09006 * 117.50002 * 214.96967 * 17 2 1 33 33 H 1.09001 * 117.50095 * 359.97438 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 3.2240 1.5328 -0.5923 5 7 1.6009 2.3833 0.6583 6 6 2.2329 3.7049 0.6588 7 6 1.3778 4.6790 1.4717 8 6 2.0382 6.0591 1.4727 9 6 1.1955 7.0186 2.2729 10 1 0.2807 6.6780 2.7349 11 6 1.5925 8.3314 2.4152 12 7 0.8574 9.1686 3.1139 13 14 3.1745 8.9206 1.6155 14 1 4.3053 8.7362 2.5602 15 1 3.4277 8.1348 0.3810 16 1 3.0481 10.3592 1.2694 17 6 2.2370 -1.1209 0.7645 18 6 2.2366 -1.1206 -0.7655 19 1 3.1712 -0.8744 -1.2693 20 9 1.4340 -2.0673 -1.4114 21 1 -0.3634 0.0792 -1.0245 22 1 -0.3632 -0.9270 0.4437 23 1 -0.3633 0.8476 0.5809 24 1 0.7661 2.2447 1.1324 25 1 2.3199 4.0664 -0.3659 26 1 3.2252 3.6331 1.1042 27 1 1.2904 4.3177 2.4964 28 1 0.3857 4.7509 1.0259 29 1 2.1260 6.4207 0.4481 30 1 3.0302 5.9870 1.9187 31 1 1.1369 10.0920 3.2143 32 1 3.1722 -0.8750 1.2676 33 1 1.6121 -1.8585 1.2681 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399296946.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:26 Heat of formation + Delta-G solvation = -79.433380 kcal Electronic energy + Delta-G solvation = -15430.260325 eV Core-core repulsion = 12598.641750 eV Total energy + Delta-G solvation = -2831.618575 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 229.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.91965 -40.09699 -36.67817 -35.53181 -33.39326 -31.54188 -29.08046 -27.27092 -24.00236 -22.81328 -22.08141 -20.65594 -19.32033 -17.76350 -16.84642 -16.23183 -15.86837 -15.47098 -15.17088 -14.73568 -14.23306 -14.15630 -13.74479 -13.10269 -12.84386 -12.74008 -12.61332 -12.32749 -12.03383 -11.96805 -11.12837 -10.93095 -10.68420 -10.25131 -10.23033 -10.01588 -9.81749 -9.59832 -9.26208 -8.96805 -8.58283 -6.09050 -4.08030 2.32192 3.02268 3.29099 3.30503 3.36924 3.40807 3.80872 4.12927 4.40967 4.41898 4.59027 4.76885 5.22118 5.24969 5.31391 5.34384 5.39534 5.54097 5.59086 5.74351 5.82907 5.95060 6.26164 6.38616 6.61704 6.73459 7.18385 7.31947 7.50850 7.73089 8.17463 8.47221 8.94573 9.53075 11.04172 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.062288 B = 0.004276 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.417954 B = 6546.606329 C = 6821.379271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.177 4.177 3 C 0.547 3.453 4 O -0.543 6.543 5 N -0.717 5.717 6 C 0.113 3.887 7 C -0.114 4.114 8 C -0.011 4.011 9 C -0.523 4.523 10 H 0.072 0.928 11 C 0.067 3.933 12 N -0.903 5.903 13 Si 0.880 3.120 14 H -0.276 1.276 15 H -0.265 1.265 16 H -0.287 1.287 17 C -0.159 4.159 18 C 0.051 3.949 19 H 0.146 0.854 20 F -0.179 7.179 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.401 0.599 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.019 0.981 30 H 0.014 0.986 31 H 0.264 0.736 32 H 0.116 0.884 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.666 -19.922 -5.115 20.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.181 4.181 3 C 0.332 3.668 4 O -0.421 6.421 5 N -0.367 5.367 6 C -0.010 4.010 7 C -0.152 4.152 8 C -0.049 4.049 9 C -0.561 4.561 10 H 0.090 0.910 11 C -0.134 4.134 12 N -0.541 5.541 13 Si 0.707 3.293 14 H -0.202 1.202 15 H -0.189 1.189 16 H -0.213 1.213 17 C -0.197 4.197 18 C 0.015 3.985 19 H 0.163 0.837 20 F -0.159 7.159 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.236 0.764 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.134 0.866 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.378 -19.595 -5.494 20.398 hybrid contribution 0.246 0.399 -0.086 0.477 sum 1.625 -19.196 -5.580 20.057 Atomic orbital electron populations 1.21317 0.89527 1.03124 1.03312 1.22272 0.97342 0.90617 1.07854 1.19225 0.84373 0.84457 0.78705 1.90705 1.23280 1.83957 1.44187 1.46106 1.27185 1.10458 1.52999 1.21716 0.97261 0.80565 1.01412 1.21716 0.98752 0.95922 0.98776 1.19504 0.96294 0.91738 0.97359 1.21089 1.09072 0.93809 1.32142 0.91001 1.25029 0.96929 0.96739 0.94745 1.69912 1.38581 1.04967 1.40676 0.86775 0.84004 0.77939 0.80576 1.20225 1.18915 1.21329 1.23832 1.03291 0.98543 0.93994 1.22165 0.94822 0.89528 0.92007 0.83653 1.92805 1.75511 1.65026 1.82568 0.91068 0.91110 0.91135 0.76355 0.91579 0.91615 0.92054 0.92015 0.96280 0.96721 0.92664 0.86590 0.86595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.43 37.16 0.35 -0.62 16 2 C -0.18 -1.83 2.61 -155.66 -0.41 -2.24 16 3 C 0.55 7.55 7.39 -10.99 -0.08 7.47 16 4 O -0.54 -9.42 16.26 5.55 0.09 -9.33 16 5 N -0.72 -9.52 5.45 -60.29 -0.33 -9.85 16 6 C 0.11 1.82 5.67 -4.05 -0.02 1.79 16 7 C -0.11 -2.07 5.27 -26.73 -0.14 -2.21 16 8 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 16 9 C -0.52 -14.58 9.66 -34.44 -0.33 -14.92 16 10 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 11 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 12 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 13 Si 0.88 21.54 27.47 -169.99 -4.67 16.88 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 C -0.16 -1.34 9.86 -26.73 -0.26 -1.60 16 18 C 0.05 0.52 7.35 -26.73 -0.20 0.32 16 19 H 0.15 1.49 7.67 -51.93 -0.40 1.09 16 20 F -0.18 -1.97 17.14 2.25 0.04 -1.93 16 21 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.07 0.51 7.90 -51.93 -0.41 0.10 16 23 H 0.07 0.53 6.38 -51.93 -0.33 0.20 16 24 H 0.40 4.32 6.77 -40.82 -0.28 4.05 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 30 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.12 0.77 8.05 -51.93 -0.42 0.35 16 LS Contribution 284.49 15.07 4.29 4.29 Total: -1.00 -32.01 284.49 -5.84 -37.85 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -4.72 Total: -0.59 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -1.30 Total: -10.54 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.44 Total: -36.62 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.01 -5.84 -37.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399296946.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.584 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds