Wall clock time and date at job start Mon Mar 30 2020 02:54:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.50697 * 115.54521 * 2 1
4 4 O 1.21285 * 120.00043 * 214.32927 * 3 2 1
5 5 N 1.34779 * 120.00162 * 34.33356 * 3 2 1
6 6 C 1.46497 * 120.00021 * 179.97438 * 5 3 2
7 7 C 1.52997 * 109.47333 * 179.97438 * 6 5 3
8 8 C 1.53002 * 109.47535 * 179.97438 * 7 6 5
9 9 C 1.50696 * 109.46997 * 179.97438 * 8 7 6
10 10 H 1.07999 * 120.00319 * 0.02562 * 9 8 7
11 11 C 1.37885 * 119.99717 * 180.02562 * 9 8 7
12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 8
13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 8
14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9
15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9
16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9
17 17 C 1.52994 * 117.52076 * 145.70386 * 2 1 3
18 18 C 1.53001 * 117.50112 * 214.33685 * 2 1 3
19 19 H 1.08994 * 117.50040 * 144.97039 * 18 2 1
20 20 F 1.39908 * 117.49787 * 359.96959 * 18 2 1
21 21 H 1.08992 * 109.47406 * 85.58182 * 1 2 3
22 22 H 1.09004 * 109.46362 * 205.57894 * 1 2 3
23 23 H 1.08991 * 109.47226 * 325.57548 * 1 2 3
24 24 H 0.96994 * 119.99487 * 0.02562 * 5 3 2
25 25 H 1.09005 * 109.46979 * 60.00120 * 6 5 3
26 26 H 1.09004 * 109.47608 * 300.00243 * 6 5 3
27 27 H 1.09005 * 109.46889 * 60.00189 * 7 6 5
28 28 H 1.09002 * 109.47401 * 300.00278 * 7 6 5
29 29 H 1.09005 * 109.46767 * 60.00250 * 8 7 6
30 30 H 1.09002 * 109.47113 * 300.00590 * 8 7 6
31 31 H 0.97001 * 119.99646 * 179.97438 * 12 11 9
32 32 H 1.09006 * 117.50002 * 214.96967 * 17 2 1
33 33 H 1.09001 * 117.50095 * 359.97438 * 17 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1799 1.3597 0.0000
4 8 3.2240 1.5328 -0.5923
5 7 1.6009 2.3833 0.6583
6 6 2.2329 3.7049 0.6588
7 6 1.3778 4.6790 1.4717
8 6 2.0382 6.0591 1.4727
9 6 1.1955 7.0186 2.2729
10 1 0.2807 6.6780 2.7349
11 6 1.5925 8.3314 2.4152
12 7 0.8574 9.1686 3.1139
13 14 3.1745 8.9206 1.6155
14 1 4.3053 8.7362 2.5602
15 1 3.4277 8.1348 0.3810
16 1 3.0481 10.3592 1.2694
17 6 2.2370 -1.1209 0.7645
18 6 2.2366 -1.1206 -0.7655
19 1 3.1712 -0.8744 -1.2693
20 9 1.4340 -2.0673 -1.4114
21 1 -0.3634 0.0792 -1.0245
22 1 -0.3632 -0.9270 0.4437
23 1 -0.3633 0.8476 0.5809
24 1 0.7661 2.2447 1.1324
25 1 2.3199 4.0664 -0.3659
26 1 3.2252 3.6331 1.1042
27 1 1.2904 4.3177 2.4964
28 1 0.3857 4.7509 1.0259
29 1 2.1260 6.4207 0.4481
30 1 3.0302 5.9870 1.9187
31 1 1.1369 10.0920 3.2143
32 1 3.1722 -0.8750 1.2676
33 1 1.6121 -1.8585 1.2681
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000399296946.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:54:25
Heat of formation + Delta-G solvation = -100.632805 kcal
Electronic energy + Delta-G solvation = -15431.179601 eV
Core-core repulsion = 12598.641750 eV
Total energy + Delta-G solvation = -2832.537851 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 229.122 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-48.72461 -41.15472 -37.64489 -36.84605 -35.19858 -33.33299 -29.98480 -28.78849
-25.41485 -23.68390 -23.26381 -22.24606 -20.43978 -19.01625 -18.51775 -17.33309
-16.87167 -16.70833 -16.34032 -15.96335 -15.55593 -15.48526 -14.78473 -14.76293
-13.99484 -13.79368 -13.62277 -13.58306 -13.26913 -13.04184 -12.74103 -12.69457
-11.93991 -11.79494 -11.60801 -11.47978 -11.34073 -11.01752 -10.80224 -10.76291
-10.15637 -8.29576 -6.33559 1.32350 1.36956 1.38841 1.50312 1.99096
2.36283 2.49563 3.00877 3.06358 3.39849 3.56202 3.79768 3.99308
4.07184 4.18429 4.48319 4.58723 4.67087 4.72704 4.77986 4.86965
4.88774 5.02889 5.05329 5.18674 5.33642 5.47594 5.54824 5.64782
6.27056 6.46326 6.74725 7.11815 7.31444 8.86862
Molecular weight = 229.12amu
Principal moments of inertia in cm(-1)
A = 0.062288 B = 0.004276 C = 0.004104
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 449.417954 B = 6546.606329 C = 6821.379271
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.183 4.183
3 C 0.546 3.454
4 O -0.583 6.583
5 N -0.709 5.709
6 C 0.125 3.875
7 C -0.101 4.101
8 C -0.013 4.013
9 C -0.531 4.531
10 H 0.038 0.962
11 C 0.005 3.995
12 N -0.950 5.950
13 Si 0.947 3.053
14 H -0.267 1.267
15 H -0.248 1.248
16 H -0.285 1.285
17 C -0.135 4.135
18 C 0.040 3.960
19 H 0.139 0.861
20 F -0.184 7.184
21 H 0.065 0.935
22 H 0.088 0.912
23 H 0.079 0.921
24 H 0.415 0.585
25 H 0.058 0.942
26 H 0.061 0.939
27 H 0.066 0.934
28 H 0.064 0.936
29 H 0.020 0.980
30 H 0.021 0.979
31 H 0.266 0.734
32 H 0.120 0.880
33 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.300 -21.392 -5.430 22.109
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.187 4.187
3 C 0.333 3.667
4 O -0.463 6.463
5 N -0.360 5.360
6 C 0.002 3.998
7 C -0.139 4.139
8 C -0.051 4.051
9 C -0.569 4.569
10 H 0.056 0.944
11 C -0.192 4.192
12 N -0.591 5.591
13 Si 0.771 3.229
14 H -0.192 1.192
15 H -0.172 1.172
16 H -0.211 1.211
17 C -0.173 4.173
18 C 0.004 3.996
19 H 0.157 0.843
20 F -0.164 7.164
21 H 0.084 0.916
22 H 0.107 0.893
23 H 0.098 0.902
24 H 0.253 0.747
25 H 0.077 0.923
26 H 0.080 0.920
27 H 0.084 0.916
28 H 0.083 0.917
29 H 0.039 0.961
30 H 0.039 0.961
31 H 0.075 0.925
32 H 0.138 0.862
33 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges 1.984 -21.096 -5.801 21.969
hybrid contribution -0.020 0.828 0.043 0.830
sum 1.964 -20.268 -5.758 21.161
Atomic orbital electron populations
1.21368 0.87947 1.04503 1.03369 1.22239 0.98361 0.88788 1.09289
1.19766 0.83823 0.85526 0.77608 1.90687 1.25140 1.84750 1.45772
1.45940 1.27590 1.09432 1.53071 1.21363 0.96692 0.81431 1.00355
1.21489 0.98771 0.93979 0.99640 1.19471 0.96021 0.93235 0.96325
1.21468 1.08486 0.94945 1.32032 0.94396 1.25982 1.00706 0.97041
0.95454 1.70059 1.40880 1.05517 1.42664 0.85701 0.79501 0.77493
0.80231 1.19180 1.17150 1.21088 1.23969 1.03403 0.97243 0.92656
1.22191 0.94497 0.89592 0.93341 0.84342 1.92793 1.75639 1.65134
1.82871 0.91645 0.89347 0.90247 0.74747 0.92339 0.92016 0.91552
0.91694 0.96116 0.96106 0.92504 0.86191 0.84107
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.64 9.43 71.98 0.68 -0.96 16
2 C -0.18 -3.40 2.61 -52.93 -0.14 -3.54 16
3 C 0.55 14.22 7.39 87.66 0.65 14.87 16
4 O -0.58 -19.76 16.26 -3.04 -0.05 -19.81 16
5 N -0.71 -17.51 5.45 -463.06 -2.53 -20.03 16
6 C 0.13 3.82 5.67 86.38 0.49 4.31 16
7 C -0.10 -3.53 5.27 30.59 0.16 -3.37 16
8 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16
9 C -0.53 -29.81 9.66 25.60 0.25 -29.57 16
10 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16
11 C 0.01 0.29 5.47 84.66 0.46 0.76 16
12 N -0.95 -59.00 13.96 21.45 0.30 -58.70 16
13 Si 0.95 43.93 27.47 68.60 1.88 45.81 16
14 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16
15 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16
16 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16
17 C -0.14 -1.89 9.86 30.59 0.30 -1.59 16
18 C 0.04 0.75 7.35 30.60 0.22 0.97 16
19 H 0.14 2.76 7.67 -2.39 -0.02 2.74 16
20 F -0.18 -3.74 17.14 44.97 0.77 -2.97 16
21 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16
22 H 0.09 0.97 7.90 -2.38 -0.02 0.95 16
23 H 0.08 0.97 6.38 -2.39 -0.02 0.96 16
24 H 0.41 7.96 6.77 -92.71 -0.63 7.34 16
25 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16
26 H 0.06 1.95 8.14 -2.38 -0.02 1.94 16
27 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16
28 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16
29 H 0.02 0.92 7.20 -2.38 -0.02 0.90 16
30 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16
31 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16
32 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16
33 H 0.14 1.30 8.05 -2.39 -0.02 1.28 16
Total: -1.00 -69.01 284.49 4.00 -65.02
By element:
Atomic # 1 Polarization: 8.83 SS G_CDS: 0.42 Total: 9.25 kcal
Atomic # 6 Polarization: -21.75 SS G_CDS: 3.20 Total: -18.55 kcal
Atomic # 7 Polarization: -76.51 SS G_CDS: -2.23 Total: -78.74 kcal
Atomic # 8 Polarization: -19.76 SS G_CDS: -0.05 Total: -19.81 kcal
Atomic # 9 Polarization: -3.74 SS G_CDS: 0.77 Total: -2.97 kcal
Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.81 kcal
Total: -69.01 4.00 -65.02 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000399296946.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.615 kcal
(2) G-P(sol) polarization free energy of solvation -69.014 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.629 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.018 kcal
(6) G-S(sol) free energy of system = (1) + (5) -100.633 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds