Wall clock time and date at job start Mon Mar 30 2020 02:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 115.54521 * 2 1 4 4 O 1.21285 * 120.00043 * 214.32927 * 3 2 1 5 5 N 1.34779 * 120.00162 * 34.33356 * 3 2 1 6 6 C 1.46497 * 120.00021 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47333 * 179.97438 * 6 5 3 8 8 C 1.53002 * 109.47535 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.46997 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99717 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.52994 * 117.52076 * 145.70386 * 2 1 3 18 18 C 1.53001 * 117.50112 * 214.33685 * 2 1 3 19 19 H 1.08994 * 117.50040 * 144.97039 * 18 2 1 20 20 F 1.39908 * 117.49787 * 359.96959 * 18 2 1 21 21 H 1.08992 * 109.47406 * 85.58182 * 1 2 3 22 22 H 1.09004 * 109.46362 * 205.57894 * 1 2 3 23 23 H 1.08991 * 109.47226 * 325.57548 * 1 2 3 24 24 H 0.96994 * 119.99487 * 0.02562 * 5 3 2 25 25 H 1.09005 * 109.46979 * 60.00120 * 6 5 3 26 26 H 1.09004 * 109.47608 * 300.00243 * 6 5 3 27 27 H 1.09005 * 109.46889 * 60.00189 * 7 6 5 28 28 H 1.09002 * 109.47401 * 300.00278 * 7 6 5 29 29 H 1.09005 * 109.46767 * 60.00250 * 8 7 6 30 30 H 1.09002 * 109.47113 * 300.00590 * 8 7 6 31 31 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 32 32 H 1.09006 * 117.50002 * 214.96967 * 17 2 1 33 33 H 1.09001 * 117.50095 * 359.97438 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 3.2240 1.5328 -0.5923 5 7 1.6009 2.3833 0.6583 6 6 2.2329 3.7049 0.6588 7 6 1.3778 4.6790 1.4717 8 6 2.0382 6.0591 1.4727 9 6 1.1955 7.0186 2.2729 10 1 0.2807 6.6780 2.7349 11 6 1.5925 8.3314 2.4152 12 7 0.8574 9.1686 3.1139 13 14 3.1745 8.9206 1.6155 14 1 4.3053 8.7362 2.5602 15 1 3.4277 8.1348 0.3810 16 1 3.0481 10.3592 1.2694 17 6 2.2370 -1.1209 0.7645 18 6 2.2366 -1.1206 -0.7655 19 1 3.1712 -0.8744 -1.2693 20 9 1.4340 -2.0673 -1.4114 21 1 -0.3634 0.0792 -1.0245 22 1 -0.3632 -0.9270 0.4437 23 1 -0.3633 0.8476 0.5809 24 1 0.7661 2.2447 1.1324 25 1 2.3199 4.0664 -0.3659 26 1 3.2252 3.6331 1.1042 27 1 1.2904 4.3177 2.4964 28 1 0.3857 4.7509 1.0259 29 1 2.1260 6.4207 0.4481 30 1 3.0302 5.9870 1.9187 31 1 1.1369 10.0920 3.2143 32 1 3.1722 -0.8750 1.2676 33 1 1.6121 -1.8585 1.2681 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399296946.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:25 Heat of formation + Delta-G solvation = -100.632805 kcal Electronic energy + Delta-G solvation = -15431.179601 eV Core-core repulsion = 12598.641750 eV Total energy + Delta-G solvation = -2832.537851 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 229.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.72461 -41.15472 -37.64489 -36.84605 -35.19858 -33.33299 -29.98480 -28.78849 -25.41485 -23.68390 -23.26381 -22.24606 -20.43978 -19.01625 -18.51775 -17.33309 -16.87167 -16.70833 -16.34032 -15.96335 -15.55593 -15.48526 -14.78473 -14.76293 -13.99484 -13.79368 -13.62277 -13.58306 -13.26913 -13.04184 -12.74103 -12.69457 -11.93991 -11.79494 -11.60801 -11.47978 -11.34073 -11.01752 -10.80224 -10.76291 -10.15637 -8.29576 -6.33559 1.32350 1.36956 1.38841 1.50312 1.99096 2.36283 2.49563 3.00877 3.06358 3.39849 3.56202 3.79768 3.99308 4.07184 4.18429 4.48319 4.58723 4.67087 4.72704 4.77986 4.86965 4.88774 5.02889 5.05329 5.18674 5.33642 5.47594 5.54824 5.64782 6.27056 6.46326 6.74725 7.11815 7.31444 8.86862 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.062288 B = 0.004276 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.417954 B = 6546.606329 C = 6821.379271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.183 4.183 3 C 0.546 3.454 4 O -0.583 6.583 5 N -0.709 5.709 6 C 0.125 3.875 7 C -0.101 4.101 8 C -0.013 4.013 9 C -0.531 4.531 10 H 0.038 0.962 11 C 0.005 3.995 12 N -0.950 5.950 13 Si 0.947 3.053 14 H -0.267 1.267 15 H -0.248 1.248 16 H -0.285 1.285 17 C -0.135 4.135 18 C 0.040 3.960 19 H 0.139 0.861 20 F -0.184 7.184 21 H 0.065 0.935 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.415 0.585 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.020 0.980 30 H 0.021 0.979 31 H 0.266 0.734 32 H 0.120 0.880 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.300 -21.392 -5.430 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.187 4.187 3 C 0.333 3.667 4 O -0.463 6.463 5 N -0.360 5.360 6 C 0.002 3.998 7 C -0.139 4.139 8 C -0.051 4.051 9 C -0.569 4.569 10 H 0.056 0.944 11 C -0.192 4.192 12 N -0.591 5.591 13 Si 0.771 3.229 14 H -0.192 1.192 15 H -0.172 1.172 16 H -0.211 1.211 17 C -0.173 4.173 18 C 0.004 3.996 19 H 0.157 0.843 20 F -0.164 7.164 21 H 0.084 0.916 22 H 0.107 0.893 23 H 0.098 0.902 24 H 0.253 0.747 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.075 0.925 32 H 0.138 0.862 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.984 -21.096 -5.801 21.969 hybrid contribution -0.020 0.828 0.043 0.830 sum 1.964 -20.268 -5.758 21.161 Atomic orbital electron populations 1.21368 0.87947 1.04503 1.03369 1.22239 0.98361 0.88788 1.09289 1.19766 0.83823 0.85526 0.77608 1.90687 1.25140 1.84750 1.45772 1.45940 1.27590 1.09432 1.53071 1.21363 0.96692 0.81431 1.00355 1.21489 0.98771 0.93979 0.99640 1.19471 0.96021 0.93235 0.96325 1.21468 1.08486 0.94945 1.32032 0.94396 1.25982 1.00706 0.97041 0.95454 1.70059 1.40880 1.05517 1.42664 0.85701 0.79501 0.77493 0.80231 1.19180 1.17150 1.21088 1.23969 1.03403 0.97243 0.92656 1.22191 0.94497 0.89592 0.93341 0.84342 1.92793 1.75639 1.65134 1.82871 0.91645 0.89347 0.90247 0.74747 0.92339 0.92016 0.91552 0.91694 0.96116 0.96106 0.92504 0.86191 0.84107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 9.43 71.98 0.68 -0.96 16 2 C -0.18 -3.40 2.61 -52.93 -0.14 -3.54 16 3 C 0.55 14.22 7.39 87.66 0.65 14.87 16 4 O -0.58 -19.76 16.26 -3.04 -0.05 -19.81 16 5 N -0.71 -17.51 5.45 -463.06 -2.53 -20.03 16 6 C 0.13 3.82 5.67 86.38 0.49 4.31 16 7 C -0.10 -3.53 5.27 30.59 0.16 -3.37 16 8 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 9 C -0.53 -29.81 9.66 25.60 0.25 -29.57 16 10 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 11 C 0.01 0.29 5.47 84.66 0.46 0.76 16 12 N -0.95 -59.00 13.96 21.45 0.30 -58.70 16 13 Si 0.95 43.93 27.47 68.60 1.88 45.81 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 15 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 16 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 17 C -0.14 -1.89 9.86 30.59 0.30 -1.59 16 18 C 0.04 0.75 7.35 30.60 0.22 0.97 16 19 H 0.14 2.76 7.67 -2.39 -0.02 2.74 16 20 F -0.18 -3.74 17.14 44.97 0.77 -2.97 16 21 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.09 0.97 7.90 -2.38 -0.02 0.95 16 23 H 0.08 0.97 6.38 -2.39 -0.02 0.96 16 24 H 0.41 7.96 6.77 -92.71 -0.63 7.34 16 25 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.06 1.95 8.14 -2.38 -0.02 1.94 16 27 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 28 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.02 0.92 7.20 -2.38 -0.02 0.90 16 30 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 31 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 32 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.14 1.30 8.05 -2.39 -0.02 1.28 16 Total: -1.00 -69.01 284.49 4.00 -65.02 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.42 Total: 9.25 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 3.20 Total: -18.55 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -2.23 Total: -78.74 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.05 Total: -19.81 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.77 Total: -2.97 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.81 kcal Total: -69.01 4.00 -65.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399296946.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.615 kcal (2) G-P(sol) polarization free energy of solvation -69.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds