Wall clock time and date at job start Mon Mar 30 2020 03:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46927 * 2 1 4 4 N 1.46503 * 109.47103 * 180.02562 * 3 2 1 5 5 C 1.37100 * 120.00222 * 263.37577 * 4 3 2 6 6 H 1.08000 * 119.99993 * 194.06485 * 5 4 3 7 7 C 1.38949 * 119.99931 * 14.06181 * 5 4 3 8 8 N 1.31418 * 119.99880 * 13.07889 * 7 5 4 9 9 Si 1.86798 * 120.00223 * 193.07673 * 7 5 4 10 10 H 1.48494 * 109.47165 * 60.00017 * 9 7 5 11 11 H 1.48495 * 109.47221 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47164 * 300.00106 * 9 7 5 13 13 C 1.34770 * 119.99881 * 83.37424 * 4 3 2 14 14 O 1.21296 * 120.00259 * 3.73397 * 13 4 3 15 15 C 1.50698 * 120.00090 * 183.73105 * 13 4 3 16 16 C 1.53003 * 115.54990 * 67.29513 * 15 13 4 17 17 C 1.53005 * 117.50119 * 212.96049 * 15 13 4 18 18 C 1.52998 * 59.99946 * 107.51588 * 17 15 13 19 19 H 1.09002 * 117.50177 * 107.48752 * 18 17 15 20 20 F 1.39904 * 117.50129 * 252.51461 * 18 17 15 21 21 H 1.08999 * 109.46893 * 299.99140 * 1 2 3 22 22 H 1.09002 * 109.47387 * 59.99914 * 1 2 3 23 23 H 1.09006 * 109.46576 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47263 * 240.00776 * 2 1 3 25 25 H 1.09001 * 109.47656 * 120.00819 * 2 1 3 26 26 H 1.08999 * 109.46632 * 60.00700 * 3 2 1 27 27 H 1.08999 * 109.47650 * 300.00297 * 3 2 1 28 28 H 0.97003 * 119.99669 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.46967 * 200.84156 * 16 15 13 30 30 H 1.09003 * 109.46781 * 320.83708 * 16 15 13 31 31 H 1.08995 * 109.47456 * 80.84037 * 16 15 13 32 32 H 1.08996 * 117.50074 * 215.00383 * 17 15 13 33 33 H 1.08998 * 117.49880 * 0.02562 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1910 1.5794 1.1785 6 1 5.2467 1.8068 1.1657 7 6 3.5280 1.4255 2.3899 8 7 2.3228 0.9024 2.4175 9 14 4.3499 1.9622 3.9792 10 1 4.6485 3.4154 3.9158 11 1 3.4409 1.6925 5.1221 12 1 5.6138 1.2047 4.1632 13 6 4.1783 1.3081 -1.1603 14 8 3.5733 1.2551 -2.2103 15 6 5.6829 1.2236 -1.1526 16 6 6.2698 -0.0363 -0.5129 17 6 6.4304 1.8244 -2.3448 18 6 6.4635 2.5291 -0.9872 19 1 7.3950 2.4904 -0.4226 20 9 5.7257 3.7104 -0.8544 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 1.8934 -0.5137 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.6766 1.9563 0.8901 27 1 1.6766 1.9565 -0.8899 28 1 1.8601 0.7946 3.2632 29 1 7.3037 0.1513 -0.2230 30 1 5.6873 -0.3007 0.3697 31 1 6.2366 -0.8569 -1.2295 32 1 7.3402 1.3221 -2.6734 33 1 5.8339 2.2810 -3.1346 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399297482.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:15 Heat of formation + Delta-G solvation = -71.774884 kcal Electronic energy + Delta-G solvation = -17091.938612 eV Core-core repulsion = 14260.652135 eV Total energy + Delta-G solvation = -2831.286477 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 229.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.53407 -40.75388 -37.73098 -36.73092 -34.04198 -33.22982 -29.40177 -27.66369 -26.59865 -23.57091 -23.30192 -21.98005 -20.63620 -18.66746 -17.97226 -17.25162 -16.46537 -16.19141 -15.70509 -15.67547 -15.35511 -14.88086 -14.53693 -14.09717 -13.70456 -13.63152 -13.33740 -13.09441 -13.04546 -12.76992 -12.65495 -12.46034 -12.24361 -12.09114 -12.02397 -11.45243 -11.06911 -10.78799 -10.70822 -10.20030 -9.64911 -8.16244 -5.81195 1.44353 1.51499 1.59257 1.93420 2.32132 2.60767 2.94983 3.17589 3.31968 3.69825 3.98746 4.14443 4.25409 4.41662 4.52133 4.68859 4.76571 4.79339 4.85208 4.95762 5.08567 5.11109 5.19242 5.24557 5.30002 5.42065 5.47153 5.59703 5.83692 5.91193 6.55866 7.17381 7.62802 8.03936 8.78380 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.019882 B = 0.013863 C = 0.009547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.986291 B = 2019.216872 C = 2932.005202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C 0.139 3.861 4 N -0.439 5.439 5 C -0.336 4.336 6 H 0.107 0.893 7 C -0.007 4.007 8 N -0.881 5.881 9 Si 0.986 3.014 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.260 1.260 13 C 0.464 3.536 14 O -0.650 6.650 15 C -0.158 4.158 16 C -0.098 4.098 17 C -0.153 4.153 18 C 0.030 3.970 19 H 0.175 0.825 20 F -0.205 7.205 21 H 0.055 0.945 22 H 0.043 0.957 23 H 0.060 0.940 24 H 0.010 0.990 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.012 0.988 28 H 0.269 0.731 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.155 0.845 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.266 -0.766 0.184 7.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.141 4.141 3 C 0.016 3.984 4 N -0.153 5.153 5 C -0.463 4.463 6 H 0.125 0.875 7 C -0.209 4.209 8 N -0.520 5.520 9 Si 0.810 3.190 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.185 1.185 13 C 0.254 3.746 14 O -0.540 6.540 15 C -0.162 4.162 16 C -0.155 4.155 17 C -0.191 4.191 18 C -0.005 4.005 19 H 0.192 0.808 20 F -0.185 7.185 21 H 0.074 0.926 22 H 0.062 0.938 23 H 0.079 0.921 24 H 0.028 0.972 25 H 0.097 0.903 26 H 0.112 0.888 27 H 0.031 0.969 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.172 0.828 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.764 -0.799 -0.112 6.812 hybrid contribution -0.337 0.422 0.609 0.814 sum 6.426 -0.377 0.496 6.456 Atomic orbital electron populations 1.21495 0.94669 1.01353 1.00858 1.21580 0.96309 0.96665 0.99532 1.21311 0.80445 0.97774 0.98849 1.43940 1.05744 1.59495 1.06155 1.19952 0.95945 1.47800 0.82645 0.87517 1.26052 0.96963 0.95902 1.01985 1.70183 1.13840 1.40613 1.27345 0.85084 0.78370 0.78632 0.76890 1.20237 1.20916 1.18460 1.19744 0.89204 0.82357 0.83329 1.90464 1.71033 1.59669 1.32880 1.21987 0.91250 0.97972 1.04988 1.21218 1.01271 0.92887 1.00133 1.23789 1.02914 1.01393 0.90971 1.22834 0.96057 0.78688 1.02959 0.80816 1.92757 1.79828 1.49270 1.96675 0.92636 0.93810 0.92072 0.97164 0.90334 0.88754 0.96927 0.92052 0.88415 0.92567 0.91726 0.82760 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.90 9.91 71.98 0.71 -4.19 16 2 C -0.10 -4.90 5.66 30.59 0.17 -4.73 16 3 C 0.14 7.27 4.54 86.38 0.39 7.66 16 4 N -0.44 -23.12 2.64 -635.53 -1.68 -24.80 16 5 C -0.34 -16.77 7.97 84.04 0.67 -16.10 16 6 H 0.11 4.99 5.78 -2.91 -0.02 4.97 16 7 C -0.01 -0.36 5.13 84.93 0.44 0.08 16 8 N -0.88 -43.72 8.11 21.66 0.18 -43.54 16 9 Si 0.99 38.47 29.57 68.60 2.03 40.50 16 10 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 11 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 12 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 13 C 0.46 23.96 6.47 87.66 0.57 24.53 16 14 O -0.65 -37.76 16.41 -3.08 -0.05 -37.81 16 15 C -0.16 -6.20 1.36 -52.93 -0.07 -6.27 16 16 C -0.10 -3.16 9.38 71.98 0.67 -2.48 16 17 C -0.15 -4.88 9.76 30.60 0.30 -4.58 16 18 C 0.03 1.03 6.58 30.59 0.20 1.23 16 19 H 0.17 4.15 8.08 -2.39 -0.02 4.13 16 20 F -0.20 -8.69 17.13 44.97 0.77 -7.92 16 21 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 22 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 24 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 25 H 0.08 4.00 6.29 -2.39 -0.02 3.99 16 26 H 0.09 5.06 5.82 -2.39 -0.01 5.04 16 27 H 0.01 0.68 7.58 -2.39 -0.02 0.66 16 28 H 0.27 12.71 8.31 -92.71 -0.77 11.94 16 29 H 0.10 2.28 7.94 -2.39 -0.02 2.26 16 30 H 0.06 2.13 6.80 -2.39 -0.02 2.12 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.15 3.37 8.14 -2.39 -0.02 3.35 16 33 H 0.08 3.03 8.03 -2.39 -0.02 3.02 16 Total: -1.00 -64.51 275.42 6.40 -58.11 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 1.10 Total: 20.31 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 4.05 Total: -4.85 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: -1.50 Total: -68.34 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -0.05 Total: -37.81 kcal Atomic # 9 Polarization: -8.69 SS G_CDS: 0.77 Total: -7.92 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -64.51 6.40 -58.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399297482.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.664 kcal (2) G-P(sol) polarization free energy of solvation -64.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds