Wall clock time and date at job start Mon Mar 30 2020 03:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46874 * 2 1 4 4 N 1.46498 * 109.46638 * 175.36301 * 3 2 1 5 5 C 1.37098 * 120.00008 * 264.49684 * 4 3 2 6 6 H 1.08000 * 120.00203 * 141.87310 * 5 4 3 7 7 C 1.38958 * 119.99731 * 321.87055 * 5 4 3 8 8 N 1.31416 * 119.99662 * 159.39136 * 7 5 4 9 9 Si 1.86794 * 120.00236 * 339.39335 * 7 5 4 10 10 H 1.48502 * 109.47443 * 94.77797 * 9 7 5 11 11 H 1.48503 * 109.47102 * 214.77926 * 9 7 5 12 12 H 1.48499 * 109.46978 * 334.77893 * 9 7 5 13 13 C 1.34777 * 120.00399 * 84.49912 * 4 3 2 14 14 O 1.21295 * 119.99617 * 3.82373 * 13 4 3 15 15 C 1.50693 * 120.00568 * 183.81925 * 13 4 3 16 16 C 1.53003 * 115.54841 * 307.76939 * 15 13 4 17 17 C 1.52999 * 117.49858 * 93.46934 * 15 13 4 18 18 C 1.52999 * 117.50179 * 162.09555 * 15 13 4 19 19 H 1.08998 * 117.49626 * 359.97438 * 18 15 13 20 20 F 1.39898 * 117.49794 * 145.02516 * 18 15 13 21 21 H 1.09000 * 109.47252 * 299.99508 * 1 2 3 22 22 H 1.09002 * 109.47335 * 60.00115 * 1 2 3 23 23 H 1.09003 * 109.47143 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46973 * 120.00534 * 2 1 3 25 25 H 1.09008 * 109.46672 * 240.00243 * 2 1 3 26 26 H 1.08996 * 109.47133 * 295.35879 * 3 2 1 27 27 H 1.08994 * 109.46780 * 55.36465 * 3 2 1 28 28 H 0.96992 * 119.99789 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.47413 * 51.27695 * 16 15 13 30 30 H 1.09000 * 109.47005 * 171.27708 * 16 15 13 31 31 H 1.09004 * 109.47088 * 291.27196 * 16 15 13 32 32 H 1.08997 * 117.50204 * 214.97965 * 17 15 13 33 33 H 1.09002 * 117.50137 * 0.02562 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5007 1.4440 0.1117 5 6 4.0942 1.5903 1.3388 6 1 4.9864 1.0304 1.5774 7 6 3.5479 2.4592 2.2756 8 7 3.8383 2.3190 3.5496 9 14 2.4008 3.8263 1.7241 10 1 0.9928 3.3696 1.8436 11 1 2.6078 5.0218 2.5804 12 1 2.6898 4.1745 0.3097 13 6 4.2611 1.3015 -0.9919 14 8 3.7385 1.2417 -2.0849 15 6 5.7606 1.2165 -0.8681 16 6 6.4212 2.3401 -0.0668 17 6 6.3840 -0.1777 -0.7768 18 6 6.5365 0.6462 -2.0570 19 1 5.9623 0.3321 -2.9286 20 9 7.7960 1.1916 -2.3279 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.7461 1.9317 -0.9286 27 1 1.6104 1.9797 0.8455 28 1 3.4567 2.9252 4.2035 29 1 5.9220 2.4412 0.8969 30 1 7.4732 2.1029 0.0921 31 1 6.3393 3.2766 -0.6185 32 1 7.2650 -0.2948 -0.1458 33 1 5.7096 -1.0336 -0.8068 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399297486.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:18 Heat of formation + Delta-G solvation = -56.786520 kcal Electronic energy + Delta-G solvation = -16858.236688 eV Core-core repulsion = 14027.600155 eV Total energy + Delta-G solvation = -2830.636533 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 229.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.21134 -39.34784 -36.14031 -35.05397 -33.02742 -31.67231 -28.13794 -26.00507 -25.09992 -22.16086 -21.86842 -20.83719 -18.66985 -17.34888 -16.34350 -15.68794 -15.21255 -14.70571 -14.36121 -14.19816 -13.90435 -13.63359 -13.12648 -12.66533 -12.61304 -12.06153 -11.96681 -11.72813 -11.53392 -11.47273 -11.35418 -11.04137 -10.84367 -10.43268 -10.04028 -9.83059 -9.78063 -9.36806 -9.11142 -8.61656 -7.85802 -6.55598 -4.14033 2.98307 3.16172 3.25527 3.44668 3.94833 4.07604 4.19360 4.68323 4.90886 5.11253 5.30618 5.47019 5.52556 5.59246 5.74879 5.87025 6.00687 6.05132 6.25988 6.28121 6.32260 6.38066 6.47245 6.54882 6.60186 6.70362 6.83128 7.18675 7.30544 7.98121 8.16833 8.84558 9.24747 9.57585 10.53727 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.011457 C = 0.009008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.965127 B = 2443.405186 C = 3107.446370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.102 3.898 4 N -0.456 5.456 5 C -0.341 4.341 6 H 0.112 0.888 7 C 0.067 3.933 8 N -0.856 5.856 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.261 1.261 13 C 0.514 3.486 14 O -0.596 6.596 15 C -0.125 4.125 16 C -0.129 4.129 17 C -0.167 4.167 18 C 0.030 3.970 19 H 0.136 0.864 20 F -0.187 7.187 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.276 0.724 29 H 0.117 0.883 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.107 0.893 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.195 -2.602 -4.182 4.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.021 4.021 4 N -0.174 5.174 5 C -0.467 4.467 6 H 0.129 0.871 7 C -0.141 4.141 8 N -0.491 5.491 9 Si 0.699 3.301 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.185 1.185 13 C 0.302 3.698 14 O -0.481 6.481 15 C -0.128 4.128 16 C -0.186 4.186 17 C -0.205 4.205 18 C -0.007 4.007 19 H 0.153 0.847 20 F -0.168 7.168 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.125 0.875 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.455 -2.535 -4.486 5.172 hybrid contribution -0.476 0.803 0.046 0.935 sum -0.931 -1.732 -4.440 4.856 Atomic orbital electron populations 1.21707 0.96242 1.01134 1.01445 1.21774 0.94970 0.97824 1.02459 1.21687 0.82389 0.96829 1.01186 1.43636 1.03617 1.63553 1.06628 1.19085 1.13752 1.25561 0.88344 0.87101 1.25316 0.96935 0.97109 0.94697 1.69745 1.42933 1.36094 1.00326 0.87011 0.80711 0.82271 0.80088 1.20017 1.21359 1.18461 1.19159 0.86641 0.80230 0.83722 1.90544 1.74316 1.56370 1.26905 1.21825 0.93514 0.97327 1.00147 1.21649 0.99045 0.94816 1.03058 1.23666 1.03136 0.94743 0.98914 1.22206 0.81982 1.02043 0.94434 0.84708 1.92740 1.42091 1.86965 1.94966 0.92901 0.93045 0.92956 0.91182 0.92072 0.91590 0.91258 0.91363 0.86476 0.93173 0.93059 0.87477 0.87589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 37.16 0.37 -1.90 16 2 C -0.13 -2.48 6.22 -26.73 -0.17 -2.64 16 3 C 0.10 2.21 3.97 -4.04 -0.02 2.19 16 4 N -0.46 -10.65 2.18 -114.82 -0.25 -10.90 16 5 C -0.34 -8.37 6.83 -14.93 -0.10 -8.47 16 6 H 0.11 2.84 6.75 -52.49 -0.35 2.48 16 7 C 0.07 1.69 5.30 -17.46 -0.09 1.60 16 8 N -0.86 -22.53 13.96 55.50 0.77 -21.76 16 9 Si 0.87 19.92 24.97 -169.99 -4.25 15.67 16 10 H -0.27 -6.00 6.67 56.52 0.38 -5.62 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.26 -6.14 7.11 56.52 0.40 -5.73 16 13 C 0.51 11.84 7.06 -10.99 -0.08 11.76 16 14 O -0.60 -14.71 16.06 5.54 0.09 -14.63 16 15 C -0.12 -2.50 1.75 -155.66 -0.27 -2.78 16 16 C -0.13 -2.54 8.96 37.16 0.33 -2.20 16 17 C -0.17 -2.83 9.89 -26.73 -0.26 -3.10 16 18 C 0.03 0.53 7.34 -26.73 -0.20 0.33 16 19 H 0.14 2.33 7.79 -51.93 -0.40 1.93 16 20 F -0.19 -3.37 17.06 2.25 0.04 -3.33 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 25 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16 26 H 0.07 1.44 7.54 -51.93 -0.39 1.05 16 27 H 0.07 1.53 3.49 -51.93 -0.18 1.35 16 28 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.12 2.55 4.78 -51.93 -0.25 2.30 16 30 H 0.05 0.88 7.96 -51.93 -0.41 0.47 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.11 1.66 8.14 -51.93 -0.42 1.23 16 33 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 274.11 15.07 4.13 4.13 Total: -1.00 -27.19 274.11 -4.48 -31.67 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -4.53 Total: 4.35 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -0.49 Total: -5.21 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.52 Total: -32.66 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.09 Total: -14.63 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.04 Total: -3.33 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.25 Total: 15.67 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.19 -4.48 -31.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399297486.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.112 kcal (2) G-P(sol) polarization free energy of solvation -27.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds