Wall clock time and date at job start Mon Mar 30 2020 02:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39128 * 126.25465 * 2 1 4 4 C 1.39926 * 125.69579 * 359.94535 * 3 2 1 5 5 H 1.07997 * 119.99617 * 16.49957 * 4 3 2 6 6 C 1.40185 * 119.99887 * 196.49629 * 4 3 2 7 7 N 1.30753 * 119.99705 * 196.70700 * 6 4 3 8 8 Si 1.86791 * 120.00094 * 16.71178 * 6 4 3 9 9 H 1.48500 * 109.47463 * 269.99645 * 8 6 4 10 10 H 1.48506 * 109.47524 * 29.99853 * 8 6 4 11 11 H 1.48498 * 109.47155 * 149.99831 * 8 6 4 12 12 N 1.38319 * 108.61013 * 180.20311 * 3 2 1 13 13 H 0.96997 * 125.60411 * 179.75147 * 12 3 2 14 14 C 1.38043 * 108.79131 * 359.60774 * 12 3 2 15 15 C 1.38935 * 132.79265 * 180.10555 * 14 12 3 16 16 C 1.37957 * 119.89336 * 180.30844 * 15 14 12 17 17 C 1.50700 * 119.65163 * 180.02562 * 16 15 14 18 18 C 1.38940 * 120.69989 * 0.02562 * 16 15 14 19 19 C 1.36438 * 120.59212 * 0.02562 * 18 16 15 20 20 C 1.50698 * 120.09866 * 180.02562 * 19 18 16 21 21 C 1.40485 * 119.80222 * 359.97438 * 19 18 16 22 22 H 1.09004 * 109.47306 * 96.47984 * 1 2 3 23 23 H 1.08998 * 109.47229 * 216.47972 * 1 2 3 24 24 H 1.09000 * 109.46989 * 336.48025 * 1 2 3 25 25 H 0.97000 * 120.00292 * 355.04119 * 7 6 4 26 26 H 1.08004 * 120.05548 * 0.28806 * 15 14 12 27 27 H 1.08998 * 109.46894 * 89.99930 * 17 16 15 28 28 H 1.08995 * 109.47243 * 209.99858 * 17 16 15 29 29 H 1.09006 * 109.47186 * 330.00303 * 17 16 15 30 30 H 1.07995 * 119.70738 * 179.97438 * 18 16 15 31 31 H 1.08998 * 109.46475 * 263.28844 * 20 19 18 32 32 H 1.09002 * 109.47041 * 23.28163 * 20 19 18 33 33 H 1.08993 * 109.47694 * 143.28813 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3297 1.1219 0.0000 4 6 1.8962 2.4523 -0.0011 5 1 0.8760 2.6880 0.2636 6 6 2.7861 3.4792 -0.3457 7 7 2.5032 4.7189 -0.0413 8 14 4.3758 3.0765 -1.2399 9 1 5.4498 2.8168 -0.2478 10 1 4.1779 1.8697 -2.0824 11 1 4.7637 4.2228 -2.1006 12 7 3.6478 0.7027 -0.0046 13 1 4.4250 1.2830 -0.0091 14 6 3.6755 -0.6775 0.0013 15 6 4.7137 -1.6007 0.0022 16 6 4.4327 -2.9514 0.0025 17 6 5.5631 -3.9480 0.0040 18 6 3.1186 -3.4025 0.0015 19 6 2.0805 -2.5172 -0.0004 20 6 0.6595 -3.0187 -0.0009 21 6 2.3403 -1.1365 -0.0008 22 1 -0.3634 -0.1160 -1.0211 23 1 -0.3633 -0.8263 0.6110 24 1 -0.3633 0.9423 0.4101 25 1 1.6464 4.9370 0.3580 26 1 5.7391 -1.2616 0.0022 27 1 5.8346 -4.1878 1.0321 28 1 5.2475 -4.8561 -0.5096 29 1 6.4248 -3.5210 -0.5092 30 1 2.9170 -4.4635 0.0014 31 1 0.2778 -3.0276 -1.0218 32 1 0.6308 -4.0294 0.4065 33 1 0.0421 -2.3622 0.6121 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527399328.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:28 Heat of formation + Delta-G solvation = 22.596106 kcal Electronic energy + Delta-G solvation = -15588.218298 eV Core-core repulsion = 13191.793278 eV Total energy + Delta-G solvation = -2396.425019 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.16178 -36.68874 -33.71355 -33.24432 -30.75532 -29.66697 -27.32577 -26.66970 -25.77474 -22.95849 -20.90644 -19.98439 -18.52197 -17.86024 -16.35372 -15.33432 -14.41516 -14.15774 -13.85848 -13.53131 -12.97244 -12.76368 -12.63054 -12.44223 -12.22056 -11.90924 -11.63088 -11.57839 -11.35087 -11.18490 -10.96502 -10.45749 -10.22592 -10.05005 -9.85628 -9.75079 -9.31543 -8.35192 -7.61252 -7.24901 -6.61625 -4.51956 2.09532 2.60882 2.76268 2.97174 3.13729 3.64424 3.72679 4.24820 4.77746 4.99368 5.53804 5.57760 5.83624 5.94042 5.96277 6.04116 6.17041 6.23625 6.27638 6.35291 6.43524 6.52516 6.65303 6.76936 6.87911 6.95531 7.13590 7.23894 7.31807 7.38654 7.51600 7.58770 7.80045 7.94067 8.25626 8.40030 8.59471 8.85327 9.77377 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.028732 B = 0.009912 C = 0.007581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.292481 B = 2824.069788 C = 3692.499206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C -0.342 4.342 3 C 0.275 3.725 4 C -0.502 4.502 5 H 0.099 0.901 6 C 0.038 3.962 7 N -0.805 5.805 8 Si 1.042 2.958 9 H -0.274 1.274 10 H -0.258 1.258 11 H -0.271 1.271 12 N -0.628 5.628 13 H 0.392 0.608 14 C 0.046 3.954 15 C -0.119 4.119 16 C -0.142 4.142 17 C -0.093 4.093 18 C -0.130 4.130 19 C -0.103 4.103 20 C -0.103 4.103 21 C -0.021 4.021 22 H 0.031 0.969 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.291 0.709 26 H 0.099 0.901 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.203 -8.493 -0.678 8.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.346 4.346 3 C 0.168 3.832 4 C -0.535 4.535 5 H 0.116 0.884 6 C -0.183 4.183 7 N -0.428 5.428 8 Si 0.868 3.132 9 H -0.201 1.201 10 H -0.182 1.182 11 H -0.196 1.196 12 N -0.244 5.244 13 H 0.233 0.767 14 C -0.057 4.057 15 C -0.140 4.140 16 C -0.143 4.143 17 C -0.150 4.150 18 C -0.149 4.149 19 C -0.104 4.104 20 C -0.159 4.159 21 C -0.025 4.025 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.103 0.897 26 H 0.118 0.882 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.599 -7.662 -1.241 8.556 hybrid contribution -0.944 -0.140 0.671 1.167 sum 2.655 -7.802 -0.570 8.261 Atomic orbital electron populations 1.19737 0.91789 0.99476 0.98687 1.18964 0.93809 0.89775 1.32076 1.17997 0.80180 0.93898 0.91116 1.19959 1.01018 0.89277 1.43229 0.88362 1.27108 1.04303 0.92860 0.94069 1.70459 1.23766 1.20253 1.28320 0.84059 0.73455 0.77696 0.77993 1.20094 1.18211 1.19643 1.42711 1.07306 1.04493 1.69864 0.76717 1.18159 0.95354 0.83120 1.09093 1.19625 0.95695 0.91584 1.07087 1.19028 0.94091 0.92604 1.08563 1.20521 0.96327 0.97407 1.00724 1.20018 0.91744 0.97548 1.05636 1.18915 0.94691 0.91463 1.05285 1.20738 0.94262 0.99678 1.01253 1.17809 0.91959 0.92170 1.00590 0.95001 0.93935 0.93859 0.89664 0.88250 0.92810 0.92735 0.92915 0.88092 0.92633 0.93307 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.84 9.47 36.00 0.34 -0.50 16 2 C -0.34 -8.34 6.26 -103.27 -0.65 -8.99 16 3 C 0.28 6.99 6.16 -83.97 -0.52 6.47 16 4 C -0.50 -12.94 9.39 -38.22 -0.36 -13.30 16 5 H 0.10 2.59 7.24 -52.49 -0.38 2.21 16 6 C 0.04 0.95 5.52 -17.28 -0.10 0.85 16 7 N -0.81 -20.45 13.65 55.56 0.76 -19.69 16 8 Si 1.04 22.06 25.10 -169.99 -4.27 17.80 16 9 H -0.27 -5.34 6.78 56.52 0.38 -4.95 16 10 H -0.26 -5.55 6.86 56.52 0.39 -5.16 16 11 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 12 N -0.63 -15.04 4.79 -8.29 -0.04 -15.08 16 13 H 0.39 8.69 4.44 -40.82 -0.18 8.51 16 14 C 0.05 1.07 7.24 -83.69 -0.61 0.46 16 15 C -0.12 -2.43 9.70 -39.43 -0.38 -2.81 16 16 C -0.14 -2.65 5.89 -104.47 -0.62 -3.26 16 17 C -0.09 -1.33 9.99 36.01 0.36 -0.97 16 18 C -0.13 -2.46 9.23 -39.97 -0.37 -2.83 16 19 C -0.10 -2.12 5.90 -104.43 -0.62 -2.74 16 20 C -0.10 -1.76 9.40 36.00 0.34 -1.42 16 21 C -0.02 -0.49 5.98 -106.91 -0.64 -1.13 16 22 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.04 0.81 5.40 -51.93 -0.28 0.53 16 24 H 0.04 0.90 7.18 -51.93 -0.37 0.53 16 25 H 0.29 7.19 8.73 -40.82 -0.36 6.83 16 26 H 0.10 1.81 8.06 -52.48 -0.42 1.38 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.10 1.64 8.04 -52.49 -0.42 1.22 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.71 8.02 -51.93 -0.42 0.30 16 33 H 0.07 1.18 5.20 -51.93 -0.27 0.91 16 LS Contribution 267.29 15.07 4.03 4.03 Total: -1.00 -27.05 267.29 -7.36 -34.41 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -4.04 Total: 8.69 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: -3.81 Total: -30.16 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.72 Total: -34.77 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.27 Total: 17.80 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.05 -7.36 -34.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527399328.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.006 kcal (2) G-P(sol) polarization free energy of solvation -27.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds