Wall clock time and date at job start Mon Mar 30 2020 02:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39126 * 126.24887 * 2 1 4 4 C 1.39922 * 125.69033 * 359.97438 * 3 2 1 5 5 H 1.07996 * 120.00066 * 1.41020 * 4 3 2 6 6 C 1.40194 * 119.99816 * 181.40334 * 4 3 2 7 7 N 1.30743 * 120.00077 * 178.22218 * 6 4 3 8 8 Si 1.86796 * 119.99924 * 358.23018 * 6 4 3 9 9 H 1.48497 * 109.47171 * 179.97438 * 8 6 4 10 10 H 1.48502 * 109.47029 * 299.99535 * 8 6 4 11 11 H 1.48502 * 109.47398 * 59.99447 * 8 6 4 12 12 N 1.38310 * 108.61594 * 180.26103 * 3 2 1 13 13 H 0.96999 * 125.60750 * 179.70381 * 12 3 2 14 14 C 1.38053 * 108.79613 * 359.56726 * 12 3 2 15 15 C 1.40939 * 126.25203 * 179.97438 * 2 1 3 16 16 C 1.40442 * 133.09627 * 0.02562 * 15 2 1 17 17 C 1.50697 * 120.10234 * 359.97438 * 16 15 2 18 18 C 1.36477 * 119.80277 * 179.97438 * 16 15 2 19 19 C 1.38898 * 120.58868 * 0.02562 * 18 16 15 20 20 C 1.38001 * 120.70353 * 359.97332 * 19 18 16 21 21 C 1.50693 * 120.05336 * 180.02562 * 20 19 18 22 22 H 1.09001 * 109.46878 * 96.55714 * 1 2 3 23 23 H 1.09003 * 109.46789 * 216.55496 * 1 2 3 24 24 H 1.09002 * 109.47452 * 336.55576 * 1 2 3 25 25 H 0.97006 * 119.99874 * 354.98970 * 7 6 4 26 26 H 1.09000 * 109.47336 * 83.40605 * 17 16 15 27 27 H 1.09000 * 109.47565 * 203.40478 * 17 16 15 28 28 H 1.09002 * 109.47351 * 323.40504 * 17 16 15 29 29 H 1.07999 * 119.70242 * 179.97438 * 18 16 15 30 30 H 1.07999 * 119.64582 * 179.97438 * 19 18 16 31 31 H 1.09008 * 109.47243 * 90.00335 * 21 20 19 32 32 H 1.09003 * 109.47254 * 209.99774 * 21 20 19 33 33 H 1.08995 * 109.47468 * 330.00215 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3296 1.1220 0.0000 4 6 1.8959 2.4523 -0.0005 5 1 0.8395 2.6758 0.0221 6 6 2.8325 3.4950 -0.0302 7 7 2.4268 4.7373 -0.0658 8 14 4.6602 3.1092 -0.0191 9 1 5.4338 4.3762 -0.0558 10 1 4.9998 2.3569 1.2155 11 1 5.0000 2.2876 -1.2086 12 7 3.6477 0.7030 -0.0060 13 1 4.4248 1.2835 -0.0113 14 6 3.6758 -0.6772 0.0001 15 6 2.3404 -1.1366 0.0005 16 6 2.0808 -2.5168 0.0007 17 6 0.6599 -3.0186 0.0008 18 6 3.1193 -3.4023 0.0007 19 6 4.4330 -2.9511 0.0011 20 6 4.7139 -1.6000 0.0009 21 6 6.1446 -1.1266 0.0007 22 1 -0.3633 -0.1174 -1.0210 23 1 -0.3633 -0.8255 0.6121 24 1 -0.3634 0.9428 0.4089 25 1 1.4808 4.9366 -0.1450 26 1 0.2779 -3.0284 -1.0200 27 1 0.6313 -4.0288 0.4091 28 1 0.0425 -2.3615 0.6135 29 1 2.9178 -4.4633 0.0012 30 1 5.2431 -3.6653 0.0015 31 1 6.4895 -1.0126 -1.0270 32 1 6.2100 -0.1675 0.5144 33 1 6.7691 -1.8573 0.5145 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527402813.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:12 Heat of formation + Delta-G solvation = 21.606687 kcal Electronic energy + Delta-G solvation = -15773.103417 eV Core-core repulsion = 13376.635493 eV Total energy + Delta-G solvation = -2396.467924 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.97254 -38.14835 -35.54959 -35.22357 -32.23393 -30.95051 -30.13128 -28.19827 -26.11146 -25.22664 -23.02909 -21.77682 -20.15334 -19.78719 -18.23703 -16.92148 -16.02818 -15.74175 -15.65070 -15.18108 -14.60661 -14.32776 -14.14596 -14.04186 -13.63265 -13.48374 -13.28582 -13.20581 -12.99873 -12.88532 -12.32817 -11.95363 -11.79950 -11.72987 -11.54819 -11.50035 -11.25110 -9.94550 -9.53567 -9.11077 -8.30275 -6.45192 0.43804 0.97370 0.99464 1.11603 1.29519 1.85105 1.87872 2.44771 3.01530 3.22398 4.02037 4.20986 4.34867 4.47077 4.49893 4.59885 4.74689 4.76095 4.85428 4.91542 4.93828 5.04824 5.07187 5.13359 5.23223 5.31822 5.36232 5.52435 5.56667 5.64926 5.74778 5.90891 6.12254 6.27100 6.36076 6.64756 6.76878 6.96240 7.83457 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.026668 B = 0.011561 C = 0.008125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.692886 B = 2421.419015 C = 3445.219960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 C -0.360 4.360 3 C 0.241 3.759 4 C -0.519 4.519 5 H 0.078 0.922 6 C 0.004 3.996 7 N -0.829 5.829 8 Si 1.069 2.931 9 H -0.249 1.249 10 H -0.256 1.256 11 H -0.255 1.255 12 N -0.632 5.632 13 H 0.387 0.613 14 C 0.016 3.984 15 C -0.053 4.053 16 C -0.115 4.115 17 C -0.101 4.101 18 C -0.134 4.134 19 C -0.153 4.153 20 C -0.107 4.107 21 C -0.109 4.109 22 H 0.036 0.964 23 H 0.065 0.935 24 H 0.032 0.968 25 H 0.285 0.715 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.544 -10.731 0.064 11.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.364 4.364 3 C 0.133 3.867 4 C -0.553 4.553 5 H 0.096 0.904 6 C -0.212 4.212 7 N -0.453 5.453 8 Si 0.892 3.108 9 H -0.173 1.173 10 H -0.183 1.183 11 H -0.182 1.182 12 N -0.255 5.255 13 H 0.235 0.765 14 C -0.086 4.086 15 C -0.057 4.057 16 C -0.116 4.116 17 C -0.157 4.157 18 C -0.153 4.153 19 C -0.171 4.171 20 C -0.110 4.110 21 C -0.165 4.165 22 H 0.055 0.945 23 H 0.083 0.917 24 H 0.051 0.949 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.157 0.843 30 H 0.162 0.838 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.054 -9.833 0.109 11.548 hybrid contribution -1.671 0.380 -0.090 1.716 sum 4.383 -9.453 0.020 10.419 Atomic orbital electron populations 1.19750 0.90293 0.99877 0.99335 1.19432 0.95206 0.90098 1.31706 1.18196 0.81350 0.94180 0.92945 1.19989 0.96658 0.89807 1.48845 0.90411 1.28060 1.10351 0.92220 0.90540 1.70511 1.20671 1.20029 1.34133 0.83717 0.70659 0.77357 0.79025 1.17340 1.18261 1.18240 1.43272 1.06564 1.05302 1.70325 0.76538 1.18580 0.96242 0.82972 1.10814 1.18160 0.91913 0.93507 1.02130 1.19419 0.97199 0.90467 1.04471 1.20767 0.92112 1.01070 1.01787 1.20636 0.91962 0.99309 1.03350 1.20734 0.97195 0.93012 1.06188 1.19192 0.93696 0.92742 1.05389 1.20736 0.92194 1.01118 1.02490 0.94486 0.91673 0.94911 0.90359 0.91968 0.90238 0.92011 0.84255 0.83786 0.90839 0.94023 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.53 9.46 71.24 0.67 -0.86 16 2 C -0.36 -18.02 6.26 -18.99 -0.12 -18.14 16 3 C 0.24 12.81 6.44 38.74 0.25 13.06 16 4 C -0.52 -28.58 9.47 23.15 0.22 -28.36 16 5 H 0.08 4.44 7.22 -2.91 -0.02 4.42 16 6 C 0.00 0.21 5.52 85.33 0.47 0.69 16 7 N -0.83 -44.12 13.65 21.87 0.30 -43.82 16 8 Si 1.07 45.04 24.84 68.60 1.70 46.74 16 9 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 10 H -0.26 -10.29 6.91 99.48 0.69 -9.60 16 11 H -0.26 -10.25 6.78 99.48 0.67 -9.58 16 12 N -0.63 -31.04 5.15 -180.16 -0.93 -31.97 16 13 H 0.39 17.48 2.21 -92.71 -0.20 17.28 16 14 C 0.02 0.76 6.91 39.05 0.27 1.03 16 15 C -0.05 -2.46 5.98 -21.35 -0.13 -2.59 16 16 C -0.11 -4.44 5.90 -19.74 -0.12 -4.56 16 17 C -0.10 -3.16 9.40 71.24 0.67 -2.49 16 18 C -0.13 -4.44 9.59 22.02 0.21 -4.23 16 19 C -0.15 -5.01 9.68 22.37 0.22 -4.79 16 20 C -0.11 -4.08 5.89 -19.77 -0.12 -4.19 16 21 C -0.11 -3.27 10.01 71.23 0.71 -2.55 16 22 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.06 2.46 5.40 -2.39 -0.01 2.45 16 24 H 0.03 1.43 7.18 -2.39 -0.02 1.41 16 25 H 0.29 14.96 8.73 -92.70 -0.81 14.15 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.08 1.98 8.02 -2.39 -0.02 1.96 16 28 H 0.06 2.00 5.20 -2.39 -0.01 1.99 16 29 H 0.14 3.58 8.04 -2.91 -0.02 3.56 16 30 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 31 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.04 1.30 7.94 -2.39 -0.02 1.28 16 33 H 0.09 2.21 8.09 -2.39 -0.02 2.19 16 Total: -1.00 -60.71 265.45 5.12 -55.59 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.83 Total: 31.44 kcal Atomic # 6 Polarization: -61.20 SS G_CDS: 3.22 Total: -57.99 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: -0.63 Total: -75.79 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.70 Total: 46.74 kcal Total: -60.71 5.12 -55.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527402813.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.200 kcal (2) G-P(sol) polarization free energy of solvation -60.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds