Wall clock time and date at job start Mon Mar 30 2020 02:59:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50697 * 109.47209 * 2 1
4 4 C 1.36237 * 119.95545 * 100.01882 * 3 2 1
5 5 C 1.40940 * 119.90188 * 179.70454 * 4 3 2
6 6 C 1.40992 * 120.09433 * 180.29502 * 5 4 3
7 7 H 1.07999 * 120.00118 * 154.21519 * 6 5 4
8 8 C 1.40186 * 120.00112 * 334.21963 * 6 5 4
9 9 N 1.30680 * 120.00062 * 342.99884 * 8 6 5
10 10 Si 1.86806 * 120.00245 * 162.99947 * 8 6 5
11 11 H 1.48502 * 109.46606 * 359.97438 * 10 8 6
12 12 H 1.48491 * 109.47321 * 119.99626 * 10 8 6
13 13 H 1.48503 * 109.47085 * 240.00208 * 10 8 6
14 14 C 1.40967 * 119.80895 * 0.54735 * 5 4 3
15 15 C 1.50704 * 120.04691 * 179.75315 * 14 5 4
16 16 C 1.53001 * 109.47191 * 84.72161 * 15 14 5
17 17 C 1.36200 * 119.90185 * 359.47066 * 14 5 4
18 18 C 1.40140 * 119.94715 * 279.99267 * 3 2 1
19 19 C 1.43196 * 119.90196 * 0.02562 * 18 3 2
20 20 N 3.55510 * 85.85066 * 287.45091 * 2 1 3
21 21 H 1.08993 * 109.47555 * 300.00709 * 1 2 3
22 22 H 1.09004 * 109.46659 * 60.00713 * 1 2 3
23 23 H 1.09001 * 109.47217 * 180.02562 * 1 2 3
24 24 H 1.09000 * 109.47238 * 239.99429 * 2 1 3
25 25 H 1.09005 * 109.47155 * 119.99448 * 2 1 3
26 26 H 1.07994 * 120.04858 * 359.95884 * 4 3 2
27 27 H 0.97002 * 119.99637 * 180.02562 * 9 8 6
28 28 H 1.08998 * 109.47055 * 324.71715 * 15 14 5
29 29 H 1.09000 * 109.46949 * 204.72422 * 15 14 5
30 30 H 1.09006 * 109.47203 * 59.99948 * 16 15 14
31 31 H 1.09000 * 109.46945 * 180.02562 * 16 15 14
32 32 H 1.08998 * 109.46894 * 299.99853 * 16 15 14
33 33 H 1.07995 * 119.95379 * 180.25285 * 17 14 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.4527 1.9937 1.1624
5 6 2.9281 3.3205 1.1600
6 6 3.3700 3.9153 2.3595
7 1 4.0916 4.7183 2.3302
8 6 2.8728 3.4643 3.5902
9 7 1.7817 2.7463 3.6306
10 14 3.7699 3.8897 5.1725
11 1 4.9696 4.7061 4.8571
12 1 2.8655 4.6613 6.0623
13 1 4.1883 2.6394 5.8559
14 6 2.9556 4.0528 -0.0442
15 6 3.4577 5.4738 -0.0519
16 6 4.9823 5.4753 -0.1807
17 6 2.5331 3.4725 -1.2017
18 6 2.0669 2.1506 -1.1959
19 6 1.6240 1.5443 -2.4152
20 7 1.2727 1.0633 -3.3826
21 1 -0.3634 0.5139 0.8898
22 1 -0.3633 0.5138 -0.8901
23 1 -0.3634 -1.0277 0.0005
24 1 1.8933 -0.5139 -0.8899
25 1 1.8933 -0.5138 0.8901
26 1 2.4255 1.4306 2.0835
27 1 1.4375 2.4346 4.4822
28 1 3.1711 5.9654 0.8777
29 1 3.0213 6.0087 -0.8953
30 1 5.2689 4.9836 -1.1103
31 1 5.3455 6.5030 -0.1858
32 1 5.4187 4.9403 0.6628
33 1 2.5577 4.0314 -2.1254
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000575640025.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:59:41
Heat of formation + Delta-G solvation = 2.156423 kcal
Electronic energy + Delta-G solvation = -15377.807570 eV
Core-core repulsion = 12980.496219 eV
Total energy + Delta-G solvation = -2397.311351 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 229.116 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.22099 -37.41163 -35.87442 -35.47427 -32.97437 -31.67570 -29.35062 -27.78563
-24.95775 -23.76843 -22.84944 -21.26445 -19.25298 -18.18439 -17.21949 -16.37348
-15.72849 -15.15704 -14.87017 -14.75232 -14.35877 -14.25285 -13.95743 -13.79672
-13.60408 -13.34153 -13.17590 -12.96135 -12.80362 -12.63444 -12.29779 -12.06754
-11.97453 -11.76684 -11.62837 -11.31272 -11.07646 -10.90406 -9.31006 -9.10465
-8.69445 -6.35661 0.47462 1.20394 1.43483 1.47215 1.59147 2.00416
2.19899 2.27854 2.89956 3.55919 3.69892 4.11725 4.18027 4.42333
4.49272 4.55672 4.61137 4.82160 4.88042 4.97685 4.99753 5.09734
5.14149 5.25683 5.27676 5.34224 5.42303 5.50954 5.60900 5.76702
5.90383 6.10212 6.18190 6.32729 6.64033 6.85449 6.88871 7.02629
8.22604
Molecular weight = 229.12amu
Principal moments of inertia in cm(-1)
A = 0.023319 B = 0.009885 C = 0.007251
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1200.456293 B = 2831.835715 C = 3860.792396
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.081 4.081
3 C -0.019 4.019
4 C -0.188 4.188
5 C 0.112 3.888
6 C -0.452 4.452
7 H 0.095 0.905
8 C 0.039 3.961
9 N -0.795 5.795
10 Si 0.976 3.024
11 H -0.253 1.253
12 H -0.268 1.268
13 H -0.267 1.267
14 C -0.204 4.204
15 C -0.058 4.058
16 C -0.137 4.137
17 C -0.033 4.033
18 C -0.202 4.202
19 C 0.301 3.699
20 N -0.524 5.524
21 H 0.052 0.948
22 H 0.035 0.965
23 H 0.072 0.928
24 H 0.057 0.943
25 H 0.075 0.925
26 H 0.111 0.889
27 H 0.294 0.706
28 H 0.059 0.941
29 H 0.063 0.937
30 H 0.048 0.952
31 H 0.066 0.934
32 H 0.044 0.956
33 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.911 1.951 2.536 4.326
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.118 4.118
3 C -0.022 4.022
4 C -0.207 4.207
5 C 0.109 3.891
6 C -0.479 4.479
7 H 0.113 0.887
8 C -0.181 4.181
9 N -0.418 5.418
10 Si 0.797 3.203
11 H -0.176 1.176
12 H -0.193 1.193
13 H -0.192 1.192
14 C -0.206 4.206
15 C -0.096 4.096
16 C -0.194 4.194
17 C -0.054 4.054
18 C -0.208 4.208
19 C -0.007 4.007
20 N -0.204 5.204
21 H 0.071 0.929
22 H 0.055 0.945
23 H 0.091 0.909
24 H 0.075 0.925
25 H 0.093 0.907
26 H 0.129 0.871
27 H 0.105 0.895
28 H 0.077 0.923
29 H 0.082 0.918
30 H 0.067 0.933
31 H 0.085 0.915
32 H 0.063 0.937
33 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges 2.185 1.092 1.189 2.717
hybrid contribution 0.172 0.155 1.028 1.054
sum 2.357 1.248 2.217 3.468
Atomic orbital electron populations
1.21608 0.94513 1.01838 1.01076 1.20508 0.96577 0.92998 1.01746
1.19371 0.95945 0.95019 0.91828 1.20793 1.08003 0.95810 0.96138
1.17953 0.87394 0.91026 0.92774 1.20127 1.21055 1.16208 0.90503
0.88673 1.26855 0.94074 0.92690 1.04443 1.69801 1.16423 1.25280
1.30287 0.85221 0.79434 0.79259 0.76400 1.17613 1.19297 1.19176
1.19663 1.10446 0.97326 0.93148 1.20159 0.95917 0.92219 1.01256
1.21684 0.95272 1.01358 1.01135 1.20327 0.95546 0.92199 0.97319
1.15490 1.21892 0.96705 0.86677 1.26073 0.90843 0.91527 0.92305
1.81058 1.15613 1.11154 1.12568 0.92866 0.94539 0.90897 0.92467
0.90657 0.87083 0.89493 0.92260 0.91823 0.93302 0.91525 0.93693
0.86780
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.58 9.84 71.98 0.71 -3.87 16
2 C -0.08 -3.00 5.54 29.85 0.17 -2.84 16
3 C -0.02 -0.82 5.13 -19.87 -0.10 -0.92 16
4 C -0.19 -8.76 8.23 22.47 0.18 -8.57 16
5 C 0.11 5.23 5.56 -21.27 -0.12 5.11 16
6 C -0.45 -20.44 8.08 23.42 0.19 -20.25 16
7 H 0.10 4.08 6.04 -2.91 -0.02 4.06 16
8 C 0.04 1.68 5.14 85.34 0.44 2.12 16
9 N -0.79 -36.06 10.97 21.87 0.24 -35.82 16
10 Si 0.98 32.90 29.59 68.60 2.03 34.93 16
11 H -0.25 -8.30 7.11 99.48 0.71 -7.59 16
12 H -0.27 -8.83 7.11 99.48 0.71 -8.12 16
13 H -0.27 -8.85 7.11 99.48 0.71 -8.14 16
14 C -0.20 -8.61 5.15 -19.67 -0.10 -8.71 16
15 C -0.06 -2.05 5.39 29.85 0.16 -1.89 16
16 C -0.14 -4.23 9.78 71.98 0.70 -3.53 16
17 C -0.03 -1.37 9.30 22.27 0.21 -1.16 16
18 C -0.20 -8.64 5.76 -21.10 -0.12 -8.76 16
19 C 0.30 12.77 13.17 88.33 1.16 13.94 16
20 N -0.52 -22.78 18.54 19.00 0.35 -22.43 16
21 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16
22 H 0.04 1.32 7.37 -2.39 -0.02 1.31 16
23 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16
24 H 0.06 2.08 7.47 -2.39 -0.02 2.06 16
25 H 0.07 2.62 7.98 -2.38 -0.02 2.60 16
26 H 0.11 5.37 6.16 -2.91 -0.02 5.35 16
27 H 0.29 12.01 8.29 -92.71 -0.77 11.24 16
28 H 0.06 2.17 7.06 -2.39 -0.02 2.15 16
29 H 0.06 1.99 8.04 -2.39 -0.02 1.97 16
30 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16
31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16
32 H 0.04 1.49 7.24 -2.39 -0.02 1.48 16
33 H 0.11 4.16 8.05 -2.91 -0.02 4.13 16
Total: -1.00 -50.32 282.78 7.21 -43.11
By element:
Atomic # 1 Polarization: 18.44 SS G_CDS: 1.11 Total: 19.54 kcal
Atomic # 6 Polarization: -42.81 SS G_CDS: 3.48 Total: -39.33 kcal
Atomic # 7 Polarization: -58.84 SS G_CDS: 0.59 Total: -58.25 kcal
Atomic # 14 Polarization: 32.90 SS G_CDS: 2.03 Total: 34.93 kcal
Total: -50.32 7.21 -43.11 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000575640025.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.266 kcal
(2) G-P(sol) polarization free energy of solvation -50.317 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.052 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.208 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.156 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds