Wall clock time and date at job start Mon Mar 30 2020 02:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47209 * 2 1 4 4 C 1.36237 * 119.95545 * 100.01882 * 3 2 1 5 5 C 1.40940 * 119.90188 * 179.70454 * 4 3 2 6 6 C 1.40992 * 120.09433 * 180.29502 * 5 4 3 7 7 H 1.07999 * 120.00118 * 154.21519 * 6 5 4 8 8 C 1.40186 * 120.00112 * 334.21963 * 6 5 4 9 9 N 1.30680 * 120.00062 * 342.99884 * 8 6 5 10 10 Si 1.86806 * 120.00245 * 162.99947 * 8 6 5 11 11 H 1.48502 * 109.46606 * 359.97438 * 10 8 6 12 12 H 1.48491 * 109.47321 * 119.99626 * 10 8 6 13 13 H 1.48503 * 109.47085 * 240.00208 * 10 8 6 14 14 C 1.40967 * 119.80895 * 0.54735 * 5 4 3 15 15 C 1.50704 * 120.04691 * 179.75315 * 14 5 4 16 16 C 1.53001 * 109.47191 * 84.72161 * 15 14 5 17 17 C 1.36200 * 119.90185 * 359.47066 * 14 5 4 18 18 C 1.40140 * 119.94715 * 279.99267 * 3 2 1 19 19 C 1.43196 * 119.90196 * 0.02562 * 18 3 2 20 20 N 3.55510 * 85.85066 * 287.45091 * 2 1 3 21 21 H 1.08993 * 109.47555 * 300.00709 * 1 2 3 22 22 H 1.09004 * 109.46659 * 60.00713 * 1 2 3 23 23 H 1.09001 * 109.47217 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47238 * 239.99429 * 2 1 3 25 25 H 1.09005 * 109.47155 * 119.99448 * 2 1 3 26 26 H 1.07994 * 120.04858 * 359.95884 * 4 3 2 27 27 H 0.97002 * 119.99637 * 180.02562 * 9 8 6 28 28 H 1.08998 * 109.47055 * 324.71715 * 15 14 5 29 29 H 1.09000 * 109.46949 * 204.72422 * 15 14 5 30 30 H 1.09006 * 109.47203 * 59.99948 * 16 15 14 31 31 H 1.09000 * 109.46945 * 180.02562 * 16 15 14 32 32 H 1.08998 * 109.46894 * 299.99853 * 16 15 14 33 33 H 1.07995 * 119.95379 * 180.25285 * 17 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4527 1.9937 1.1624 5 6 2.9281 3.3205 1.1600 6 6 3.3700 3.9153 2.3595 7 1 4.0916 4.7183 2.3302 8 6 2.8728 3.4643 3.5902 9 7 1.7817 2.7463 3.6306 10 14 3.7699 3.8897 5.1725 11 1 4.9696 4.7061 4.8571 12 1 2.8655 4.6613 6.0623 13 1 4.1883 2.6394 5.8559 14 6 2.9556 4.0528 -0.0442 15 6 3.4577 5.4738 -0.0519 16 6 4.9823 5.4753 -0.1807 17 6 2.5331 3.4725 -1.2017 18 6 2.0669 2.1506 -1.1959 19 6 1.6240 1.5443 -2.4152 20 7 1.2727 1.0633 -3.3826 21 1 -0.3634 0.5139 0.8898 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.4255 1.4306 2.0835 27 1 1.4375 2.4346 4.4822 28 1 3.1711 5.9654 0.8777 29 1 3.0213 6.0087 -0.8953 30 1 5.2689 4.9836 -1.1103 31 1 5.3455 6.5030 -0.1858 32 1 5.4187 4.9403 0.6628 33 1 2.5577 4.0314 -2.1254 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575640025.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:41 Heat of formation + Delta-G solvation = 2.156423 kcal Electronic energy + Delta-G solvation = -15377.807570 eV Core-core repulsion = 12980.496219 eV Total energy + Delta-G solvation = -2397.311351 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.22099 -37.41163 -35.87442 -35.47427 -32.97437 -31.67570 -29.35062 -27.78563 -24.95775 -23.76843 -22.84944 -21.26445 -19.25298 -18.18439 -17.21949 -16.37348 -15.72849 -15.15704 -14.87017 -14.75232 -14.35877 -14.25285 -13.95743 -13.79672 -13.60408 -13.34153 -13.17590 -12.96135 -12.80362 -12.63444 -12.29779 -12.06754 -11.97453 -11.76684 -11.62837 -11.31272 -11.07646 -10.90406 -9.31006 -9.10465 -8.69445 -6.35661 0.47462 1.20394 1.43483 1.47215 1.59147 2.00416 2.19899 2.27854 2.89956 3.55919 3.69892 4.11725 4.18027 4.42333 4.49272 4.55672 4.61137 4.82160 4.88042 4.97685 4.99753 5.09734 5.14149 5.25683 5.27676 5.34224 5.42303 5.50954 5.60900 5.76702 5.90383 6.10212 6.18190 6.32729 6.64033 6.85449 6.88871 7.02629 8.22604 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.023319 B = 0.009885 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.456293 B = 2831.835715 C = 3860.792396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 C -0.019 4.019 4 C -0.188 4.188 5 C 0.112 3.888 6 C -0.452 4.452 7 H 0.095 0.905 8 C 0.039 3.961 9 N -0.795 5.795 10 Si 0.976 3.024 11 H -0.253 1.253 12 H -0.268 1.268 13 H -0.267 1.267 14 C -0.204 4.204 15 C -0.058 4.058 16 C -0.137 4.137 17 C -0.033 4.033 18 C -0.202 4.202 19 C 0.301 3.699 20 N -0.524 5.524 21 H 0.052 0.948 22 H 0.035 0.965 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.294 0.706 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 1.951 2.536 4.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 C -0.022 4.022 4 C -0.207 4.207 5 C 0.109 3.891 6 C -0.479 4.479 7 H 0.113 0.887 8 C -0.181 4.181 9 N -0.418 5.418 10 Si 0.797 3.203 11 H -0.176 1.176 12 H -0.193 1.193 13 H -0.192 1.192 14 C -0.206 4.206 15 C -0.096 4.096 16 C -0.194 4.194 17 C -0.054 4.054 18 C -0.208 4.208 19 C -0.007 4.007 20 N -0.204 5.204 21 H 0.071 0.929 22 H 0.055 0.945 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.129 0.871 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.185 1.092 1.189 2.717 hybrid contribution 0.172 0.155 1.028 1.054 sum 2.357 1.248 2.217 3.468 Atomic orbital electron populations 1.21608 0.94513 1.01838 1.01076 1.20508 0.96577 0.92998 1.01746 1.19371 0.95945 0.95019 0.91828 1.20793 1.08003 0.95810 0.96138 1.17953 0.87394 0.91026 0.92774 1.20127 1.21055 1.16208 0.90503 0.88673 1.26855 0.94074 0.92690 1.04443 1.69801 1.16423 1.25280 1.30287 0.85221 0.79434 0.79259 0.76400 1.17613 1.19297 1.19176 1.19663 1.10446 0.97326 0.93148 1.20159 0.95917 0.92219 1.01256 1.21684 0.95272 1.01358 1.01135 1.20327 0.95546 0.92199 0.97319 1.15490 1.21892 0.96705 0.86677 1.26073 0.90843 0.91527 0.92305 1.81058 1.15613 1.11154 1.12568 0.92866 0.94539 0.90897 0.92467 0.90657 0.87083 0.89493 0.92260 0.91823 0.93302 0.91525 0.93693 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 9.84 71.98 0.71 -3.87 16 2 C -0.08 -3.00 5.54 29.85 0.17 -2.84 16 3 C -0.02 -0.82 5.13 -19.87 -0.10 -0.92 16 4 C -0.19 -8.76 8.23 22.47 0.18 -8.57 16 5 C 0.11 5.23 5.56 -21.27 -0.12 5.11 16 6 C -0.45 -20.44 8.08 23.42 0.19 -20.25 16 7 H 0.10 4.08 6.04 -2.91 -0.02 4.06 16 8 C 0.04 1.68 5.14 85.34 0.44 2.12 16 9 N -0.79 -36.06 10.97 21.87 0.24 -35.82 16 10 Si 0.98 32.90 29.59 68.60 2.03 34.93 16 11 H -0.25 -8.30 7.11 99.48 0.71 -7.59 16 12 H -0.27 -8.83 7.11 99.48 0.71 -8.12 16 13 H -0.27 -8.85 7.11 99.48 0.71 -8.14 16 14 C -0.20 -8.61 5.15 -19.67 -0.10 -8.71 16 15 C -0.06 -2.05 5.39 29.85 0.16 -1.89 16 16 C -0.14 -4.23 9.78 71.98 0.70 -3.53 16 17 C -0.03 -1.37 9.30 22.27 0.21 -1.16 16 18 C -0.20 -8.64 5.76 -21.10 -0.12 -8.76 16 19 C 0.30 12.77 13.17 88.33 1.16 13.94 16 20 N -0.52 -22.78 18.54 19.00 0.35 -22.43 16 21 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.04 1.32 7.37 -2.39 -0.02 1.31 16 23 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 24 H 0.06 2.08 7.47 -2.39 -0.02 2.06 16 25 H 0.07 2.62 7.98 -2.38 -0.02 2.60 16 26 H 0.11 5.37 6.16 -2.91 -0.02 5.35 16 27 H 0.29 12.01 8.29 -92.71 -0.77 11.24 16 28 H 0.06 2.17 7.06 -2.39 -0.02 2.15 16 29 H 0.06 1.99 8.04 -2.39 -0.02 1.97 16 30 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.49 7.24 -2.39 -0.02 1.48 16 33 H 0.11 4.16 8.05 -2.91 -0.02 4.13 16 Total: -1.00 -50.32 282.78 7.21 -43.11 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 1.11 Total: 19.54 kcal Atomic # 6 Polarization: -42.81 SS G_CDS: 3.48 Total: -39.33 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.59 Total: -58.25 kcal Atomic # 14 Polarization: 32.90 SS G_CDS: 2.03 Total: 34.93 kcal Total: -50.32 7.21 -43.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575640025.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.266 kcal (2) G-P(sol) polarization free energy of solvation -50.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds