Wall clock time and date at job start Mon Mar 30 2020 03:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.57682 * 2 1 4 4 C 1.53104 * 109.57256 * 120.25448 * 2 1 3 5 5 C 1.52579 * 109.95815 * 56.78041 * 4 2 1 6 6 C 1.52583 * 110.72415 * 70.67741 * 5 4 2 7 7 H 1.09001 * 109.31220 * 49.42285 * 6 5 4 8 8 N 1.46899 * 109.39115 * 169.17796 * 6 5 4 9 9 C 1.46899 * 111.00063 * 205.49352 * 8 6 5 10 10 C 1.52999 * 109.46886 * 179.97438 * 9 8 6 11 11 C 1.50707 * 109.47146 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99585 * 0.02562 * 11 10 9 13 13 C 1.37868 * 119.99989 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00487 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99795 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47251 * 90.00329 * 15 13 11 17 17 H 1.48496 * 109.47070 * 210.00044 * 15 13 11 18 18 H 1.48503 * 109.47309 * 330.00113 * 15 13 11 19 19 C 1.53096 * 109.95663 * 289.32197 * 6 5 4 20 20 S 1.81745 * 109.57634 * 239.60514 * 2 1 3 21 21 H 1.08994 * 109.46938 * 299.75140 * 1 2 3 22 22 H 1.09006 * 109.46807 * 59.74568 * 1 2 3 23 23 H 1.08999 * 109.47133 * 179.74563 * 1 2 3 24 24 H 1.08999 * 109.38933 * 296.63082 * 4 2 1 25 25 H 1.08998 * 109.30800 * 176.88004 * 4 2 1 26 26 H 1.08993 * 109.22594 * 310.35599 * 5 4 2 27 27 H 1.09000 * 109.22705 * 190.99594 * 5 4 2 28 28 H 1.00895 * 111.00513 * 81.53466 * 8 6 5 29 29 H 1.08996 * 109.47144 * 299.99714 * 9 8 6 30 30 H 1.09001 * 109.46874 * 60.00123 * 9 8 6 31 31 H 1.09005 * 109.47301 * 299.99755 * 10 9 8 32 32 H 1.08995 * 109.47288 * 60.00236 * 10 9 8 33 33 H 0.97000 * 120.00025 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.57729 * 182.83522 * 19 6 5 35 35 H 1.09010 * 109.57773 * 303.22163 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0429 -0.7268 1.2461 5 6 1.4771 -2.1430 1.2928 6 6 2.1065 -3.0120 0.2080 7 1 3.1908 -2.9072 0.2461 8 7 1.7440 -4.4170 0.4372 9 6 2.7441 -5.3207 -0.1469 10 6 2.3334 -6.7716 0.1121 11 6 3.3590 -7.6988 -0.4876 12 1 4.2181 -7.2936 -1.0017 13 6 3.2012 -9.0641 -0.3791 14 7 2.1553 -9.5575 0.2474 15 14 4.4721 -10.2133 -1.1231 16 1 5.5248 -10.5050 -0.1171 17 1 3.8144 -11.4801 -1.5328 18 1 5.0876 -9.5684 -2.3108 19 6 1.6017 -2.5752 -1.1698 20 16 2.1390 -0.8664 -1.4770 21 1 -0.3633 0.5099 0.8922 22 1 -0.3633 0.5178 -0.8878 23 1 -0.3633 -1.0276 -0.0046 24 1 1.7299 -0.1825 2.1370 25 1 3.1315 -0.7729 1.2140 26 1 0.3986 -2.1038 1.1405 27 1 1.6854 -2.5808 2.2691 28 1 0.8228 -4.6162 0.0773 29 1 2.8075 -5.1469 -1.2211 30 1 3.7156 -5.1314 0.3098 31 1 2.2703 -6.9452 1.1864 32 1 1.3619 -6.9612 -0.3442 33 1 2.0442 -10.5181 0.3234 34 1 2.0155 -3.2315 -1.9353 35 1 0.5129 -2.6254 -1.1926 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594501944.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:37 Heat of formation + Delta-G solvation = -25.459051 kcal Electronic energy + Delta-G solvation = -14065.637947 eV Core-core repulsion = 11802.573051 eV Total energy + Delta-G solvation = -2263.064896 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.22236 -35.38672 -33.15250 -31.19855 -29.02232 -27.89244 -25.31109 -23.93556 -21.77791 -20.76618 -19.80290 -16.80447 -16.23222 -15.79878 -15.08116 -14.58927 -14.42763 -13.94943 -13.82359 -13.29449 -13.18152 -12.65808 -12.37145 -12.07326 -12.00843 -11.41405 -11.19324 -11.10582 -10.93439 -10.80690 -10.52241 -10.46375 -10.14140 -9.77225 -9.37731 -9.15421 -8.37304 -8.06057 -7.56591 -6.01003 -4.03753 1.73122 2.46977 3.31889 3.38004 3.41301 4.38886 4.50795 4.57578 4.74917 4.79731 4.96053 5.05048 5.27053 5.35133 5.42321 5.43078 5.51404 5.63682 5.74399 5.82538 5.90621 5.92876 6.17071 6.27514 6.33455 6.41682 6.93996 7.40944 7.69076 7.77712 7.89926 8.05180 8.41473 9.03402 9.60354 11.10414 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.056411 B = 0.004787 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.234698 B = 5847.241493 C = 6059.439815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 H 0.105 0.895 4 C -0.116 4.116 5 C -0.121 4.121 6 C 0.088 3.912 7 H 0.085 0.915 8 N -0.681 5.681 9 C 0.065 3.935 10 C 0.025 3.975 11 C -0.522 4.522 12 H 0.054 0.946 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.107 4.107 20 S -0.269 6.269 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.337 0.663 29 H 0.016 0.984 30 H 0.059 0.941 31 H 0.025 0.975 32 H 0.013 0.987 33 H 0.261 0.739 34 H 0.103 0.897 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 18.324 0.415 18.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 H 0.123 0.877 4 C -0.155 4.155 5 C -0.159 4.159 6 C -0.024 4.024 7 H 0.103 0.897 8 N -0.311 5.311 9 C -0.063 4.063 10 C -0.012 4.012 11 C -0.561 4.561 12 H 0.073 0.927 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.258 4.258 20 S -0.043 6.043 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.154 0.846 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.121 0.879 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.310 18.528 0.202 18.673 hybrid contribution -0.213 -1.134 -0.448 1.238 sum -2.523 17.394 -0.246 17.578 Atomic orbital electron populations 1.22121 0.93401 1.02880 1.02345 1.23179 0.98682 1.01270 0.94953 0.87667 1.21769 1.01586 0.95882 0.96259 1.21585 1.00424 0.93483 1.00447 1.21797 1.00497 0.89710 0.90364 0.89684 1.60778 1.06409 1.00961 1.62910 1.22223 0.94137 0.94846 0.95125 1.19073 0.96505 0.87815 0.97847 1.21170 1.08019 0.91154 1.35754 0.92744 1.24994 0.95595 0.98348 0.95359 1.69971 1.28205 1.12533 1.42566 0.86588 0.81537 0.80311 0.79532 1.20599 1.21206 1.19900 1.24382 1.03814 0.94464 1.03092 1.86801 1.77624 1.08140 1.31735 0.91843 0.91773 0.91777 0.90933 0.90691 0.91617 0.90063 0.84553 0.96530 0.92199 0.95637 0.96831 0.92977 0.87862 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.72 37.16 0.32 -0.99 16 2 C -0.05 -0.51 3.45 -26.68 -0.09 -0.61 16 3 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.12 -1.15 5.32 -26.89 -0.14 -1.29 16 5 C -0.12 -1.43 5.06 -27.16 -0.14 -1.57 16 6 C 0.09 1.24 2.32 -67.88 -0.16 1.08 16 7 H 0.08 1.30 7.70 -51.93 -0.40 0.90 16 8 N -0.68 -11.68 6.24 -106.90 -0.67 -12.35 16 9 C 0.06 1.34 5.42 -3.82 -0.02 1.32 16 10 C 0.03 0.65 5.23 -27.88 -0.15 0.50 16 11 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 12 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 15 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 C -0.11 -1.42 5.33 37.21 0.20 -1.22 16 20 S -0.27 -3.40 21.75 -107.50 -2.34 -5.73 16 21 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.62 5.16 -51.93 -0.27 0.35 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 26 H 0.07 0.74 5.84 -51.93 -0.30 0.44 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.34 5.57 8.48 -39.29 -0.33 5.24 16 29 H 0.02 0.34 7.39 -51.93 -0.38 -0.04 16 30 H 0.06 1.26 8.05 -51.93 -0.42 0.84 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.10 1.50 7.39 -51.93 -0.38 1.11 16 35 H 0.08 1.02 7.42 -51.92 -0.39 0.63 16 LS Contribution 286.07 15.07 4.31 4.31 Total: -1.00 -29.49 286.07 -9.36 -38.85 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.79 Total: 0.77 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -0.58 Total: -16.33 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.07 Total: -38.56 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -2.34 Total: -5.73 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.49 -9.36 -38.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594501944.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.391 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds