Wall clock time and date at job start Mon Mar 30 2020 03:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.57682 * 2 1 4 4 C 1.53104 * 109.57256 * 120.25448 * 2 1 3 5 5 C 1.52579 * 109.95815 * 56.78041 * 4 2 1 6 6 C 1.52583 * 110.72415 * 70.67741 * 5 4 2 7 7 H 1.09001 * 109.31220 * 49.42285 * 6 5 4 8 8 N 1.46899 * 109.39115 * 169.17796 * 6 5 4 9 9 C 1.46899 * 111.00063 * 205.49352 * 8 6 5 10 10 C 1.52999 * 109.46886 * 179.97438 * 9 8 6 11 11 C 1.50707 * 109.47146 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99585 * 0.02562 * 11 10 9 13 13 C 1.37868 * 119.99989 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00487 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99795 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47251 * 90.00329 * 15 13 11 17 17 H 1.48496 * 109.47070 * 210.00044 * 15 13 11 18 18 H 1.48503 * 109.47309 * 330.00113 * 15 13 11 19 19 C 1.53096 * 109.95663 * 289.32197 * 6 5 4 20 20 S 1.81745 * 109.57634 * 239.60514 * 2 1 3 21 21 H 1.08994 * 109.46938 * 299.75140 * 1 2 3 22 22 H 1.09006 * 109.46807 * 59.74568 * 1 2 3 23 23 H 1.08999 * 109.47133 * 179.74563 * 1 2 3 24 24 H 1.08999 * 109.38933 * 296.63082 * 4 2 1 25 25 H 1.08998 * 109.30800 * 176.88004 * 4 2 1 26 26 H 1.08993 * 109.22594 * 310.35599 * 5 4 2 27 27 H 1.09000 * 109.22705 * 190.99594 * 5 4 2 28 28 H 1.00895 * 111.00513 * 81.53466 * 8 6 5 29 29 H 1.08996 * 109.47144 * 299.99714 * 9 8 6 30 30 H 1.09001 * 109.46874 * 60.00123 * 9 8 6 31 31 H 1.09005 * 109.47301 * 299.99755 * 10 9 8 32 32 H 1.08995 * 109.47288 * 60.00236 * 10 9 8 33 33 H 0.97000 * 120.00025 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.57729 * 182.83522 * 19 6 5 35 35 H 1.09010 * 109.57773 * 303.22163 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0429 -0.7268 1.2461 5 6 1.4771 -2.1430 1.2928 6 6 2.1065 -3.0120 0.2080 7 1 3.1908 -2.9072 0.2461 8 7 1.7440 -4.4170 0.4372 9 6 2.7441 -5.3207 -0.1469 10 6 2.3334 -6.7716 0.1121 11 6 3.3590 -7.6988 -0.4876 12 1 4.2181 -7.2936 -1.0017 13 6 3.2012 -9.0641 -0.3791 14 7 2.1553 -9.5575 0.2474 15 14 4.4721 -10.2133 -1.1231 16 1 5.5248 -10.5050 -0.1171 17 1 3.8144 -11.4801 -1.5328 18 1 5.0876 -9.5684 -2.3108 19 6 1.6017 -2.5752 -1.1698 20 16 2.1390 -0.8664 -1.4770 21 1 -0.3633 0.5099 0.8922 22 1 -0.3633 0.5178 -0.8878 23 1 -0.3633 -1.0276 -0.0046 24 1 1.7299 -0.1825 2.1370 25 1 3.1315 -0.7729 1.2140 26 1 0.3986 -2.1038 1.1405 27 1 1.6854 -2.5808 2.2691 28 1 0.8228 -4.6162 0.0773 29 1 2.8075 -5.1469 -1.2211 30 1 3.7156 -5.1314 0.3098 31 1 2.2703 -6.9452 1.1864 32 1 1.3619 -6.9612 -0.3442 33 1 2.0442 -10.5181 0.3234 34 1 2.0155 -3.2315 -1.9353 35 1 0.5129 -2.6254 -1.1926 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594501944.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:37 Heat of formation + Delta-G solvation = -43.494402 kcal Electronic energy + Delta-G solvation = -14066.420019 eV Core-core repulsion = 11802.573051 eV Total energy + Delta-G solvation = -2263.846968 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.35393 -36.68861 -35.06416 -32.75377 -30.19000 -29.35626 -26.50161 -25.56961 -22.89087 -22.52148 -20.87141 -18.55999 -17.65254 -16.94813 -16.50307 -16.11730 -15.78117 -15.32663 -14.91425 -14.36085 -14.28488 -14.16414 -13.98567 -13.25937 -13.07138 -12.91255 -12.81122 -12.50538 -12.36846 -12.10405 -12.03445 -11.80439 -11.45352 -11.38093 -11.11325 -10.76409 -10.57149 -9.40875 -8.64735 -8.21620 -6.33127 0.77782 1.39932 1.41262 1.52012 1.52884 2.39701 3.12033 3.26607 3.60578 3.80894 3.88663 3.94257 4.16505 4.32963 4.37934 4.49428 4.56416 4.59605 4.70911 4.79916 4.88630 5.01424 5.03859 5.04527 5.16265 5.23857 5.40501 5.45524 5.65644 5.76673 6.09904 6.23161 6.48067 6.83810 7.36377 8.90469 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.056411 B = 0.004787 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.234698 B = 5847.241493 C = 6059.439815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.042 4.042 3 H 0.123 0.877 4 C -0.110 4.110 5 C -0.116 4.116 6 C 0.092 3.908 7 H 0.072 0.928 8 N -0.684 5.684 9 C 0.085 3.915 10 C 0.032 3.968 11 C -0.546 4.546 12 H 0.059 0.941 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.966 3.034 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.264 1.264 19 C -0.100 4.100 20 S -0.298 6.298 21 H 0.083 0.917 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.098 0.902 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.340 0.660 29 H 0.018 0.982 30 H 0.056 0.944 31 H -0.005 1.005 32 H -0.007 1.007 33 H 0.264 0.736 34 H 0.086 0.914 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 19.634 0.395 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 H 0.141 0.859 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.020 4.020 7 H 0.090 0.910 8 N -0.314 5.314 9 C -0.044 4.044 10 C -0.005 4.005 11 C -0.584 4.584 12 H 0.077 0.923 13 C -0.195 4.195 14 N -0.571 5.571 15 Si 0.790 3.210 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.188 1.188 19 C -0.250 4.250 20 S -0.072 6.072 21 H 0.102 0.898 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.117 0.883 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.159 0.841 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.014 0.986 32 H 0.011 0.989 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.010 19.866 0.180 19.968 hybrid contribution -0.345 -1.473 -0.404 1.566 sum -2.355 18.392 -0.224 18.544 Atomic orbital electron populations 1.22104 0.92343 1.02606 1.03471 1.23309 0.99439 1.01420 0.92878 0.85919 1.21740 1.01152 0.94687 0.97382 1.21535 1.00887 0.94157 0.98816 1.21830 1.00043 0.88078 0.92016 0.90962 1.60697 1.05739 1.02284 1.62678 1.21802 0.94684 0.92612 0.95323 1.18919 0.95212 0.91010 0.95402 1.21605 1.08660 0.92147 1.36034 0.92323 1.25944 0.97747 1.00204 0.95642 1.70100 1.30154 1.13118 1.43717 0.85442 0.78740 0.77875 0.78952 1.19706 1.20600 1.18845 1.24186 1.04145 0.94856 1.01778 1.86914 1.78220 1.07793 1.34243 0.89779 0.91607 0.92700 0.88335 0.91295 0.90705 0.90851 0.84136 0.96364 0.92575 0.98609 0.98902 0.92699 0.89538 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.72 71.98 0.63 -1.52 16 2 C -0.04 -0.72 3.45 30.63 0.11 -0.61 16 3 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 4 C -0.11 -1.89 5.32 30.49 0.16 -1.73 16 5 C -0.12 -2.54 5.06 30.32 0.15 -2.39 16 6 C 0.09 2.53 2.32 44.81 0.10 2.63 16 7 H 0.07 2.19 7.70 -2.39 -0.02 2.17 16 8 N -0.68 -23.60 6.24 -492.13 -3.07 -26.67 16 9 C 0.08 3.58 5.42 86.30 0.47 4.04 16 10 C 0.03 1.72 5.23 29.85 0.16 1.87 16 11 C -0.55 -31.47 9.11 25.60 0.23 -31.23 16 12 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 13 C 0.00 0.16 5.46 84.65 0.46 0.62 16 14 N -0.93 -57.02 13.29 21.44 0.28 -56.74 16 15 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 19 C -0.10 -2.58 5.33 72.01 0.38 -2.20 16 20 S -0.30 -7.14 21.75 -56.49 -1.23 -8.37 16 21 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 22 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 23 H 0.05 0.92 5.16 -2.39 -0.01 0.91 16 24 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.07 1.30 8.05 -2.39 -0.02 1.28 16 26 H 0.07 1.52 5.84 -2.39 -0.01 1.51 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.34 11.34 8.48 -89.70 -0.76 10.58 16 29 H 0.02 0.76 7.39 -2.39 -0.02 0.74 16 30 H 0.06 2.40 8.05 -2.39 -0.02 2.38 16 31 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 32 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.09 2.52 7.39 -2.39 -0.02 2.50 16 35 H 0.09 2.17 7.42 -2.38 -0.02 2.16 16 Total: -1.00 -63.50 286.07 1.16 -62.34 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.30 Total: 13.40 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 2.86 Total: -30.52 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -2.79 Total: -83.41 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: -7.14 SS G_CDS: -1.23 Total: -8.37 kcal Total: -63.50 1.16 -62.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594501944.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.848 kcal (2) G-P(sol) polarization free energy of solvation -63.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds