Wall clock time and date at job start Mon Mar 30 2020 03:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.57534 * 2 1 4 4 C 1.53095 * 109.68161 * 120.32233 * 2 1 3 5 5 C 1.52627 * 109.87245 * 56.80365 * 4 2 1 6 6 C 1.52588 * 110.70046 * 70.82169 * 5 4 2 7 7 H 1.08995 * 109.39270 * 49.27372 * 6 5 4 8 8 N 1.46898 * 109.39032 * 169.07907 * 6 5 4 9 9 C 1.46903 * 111.00007 * 189.74614 * 8 6 5 10 10 C 1.46892 * 111.00321 * 65.78877 * 8 6 5 11 11 C 1.50700 * 109.47318 * 190.00040 * 10 8 6 12 12 H 1.07997 * 119.99894 * 0.02562 * 11 10 8 13 13 C 1.37873 * 120.00147 * 180.02562 * 11 10 8 14 14 N 1.31519 * 120.00322 * 180.02562 * 13 11 10 15 15 Si 1.86810 * 120.00102 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.46943 * 90.00005 * 15 13 11 17 17 H 1.48500 * 109.46902 * 210.00138 * 15 13 11 18 18 H 1.48501 * 109.46666 * 330.00155 * 15 13 11 19 19 C 1.53100 * 109.87635 * 289.17599 * 6 5 4 20 20 S 1.81745 * 109.57498 * 239.74210 * 2 1 3 21 21 H 1.08996 * 109.47304 * 180.25407 * 1 2 3 22 22 H 1.08998 * 109.46642 * 300.25715 * 1 2 3 23 23 H 1.09003 * 109.46754 * 60.25537 * 1 2 3 24 24 H 1.08996 * 109.38805 * 176.99222 * 4 2 1 25 25 H 1.09001 * 109.38894 * 296.69989 * 4 2 1 26 26 H 1.08997 * 109.32070 * 310.46114 * 5 4 2 27 27 H 1.09001 * 109.16083 * 191.08118 * 5 4 2 28 28 H 1.09004 * 109.46939 * 53.95777 * 9 8 6 29 29 H 1.08999 * 109.47064 * 173.95973 * 9 8 6 30 30 H 1.08994 * 109.46746 * 293.96013 * 9 8 6 31 31 H 1.09005 * 109.47444 * 310.00409 * 10 8 6 32 32 H 1.08998 * 109.47270 * 70.00303 * 10 8 6 33 33 H 0.96992 * 120.00054 * 180.02562 * 14 13 11 34 34 H 1.08999 * 109.57588 * 182.88376 * 19 6 5 35 35 H 1.09004 * 109.57374 * 303.14124 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0457 -0.7278 1.2443 5 6 1.4804 -2.1448 1.2881 6 6 2.1122 -3.0113 0.2025 7 1 3.1963 -2.9045 0.2395 8 7 1.7526 -4.4173 0.4299 9 6 2.5227 -5.3066 -0.4499 10 6 0.3090 -4.6262 0.2564 11 6 -0.0595 -6.0079 0.7319 12 1 0.7026 -6.6650 1.1242 13 6 -1.3693 -6.4332 0.6662 14 7 -1.6910 -7.6388 1.0816 15 14 -2.6876 -5.2963 -0.0117 16 1 -2.8090 -5.4980 -1.4779 17 1 -3.9869 -5.6015 0.6392 18 1 -2.3146 -3.8857 0.2647 19 6 1.6051 -2.5732 -1.1740 20 16 2.1390 -0.8629 -1.4791 21 1 -0.3634 -1.0276 0.0046 22 1 -0.3632 0.5178 0.8877 23 1 -0.3633 0.5099 -0.8923 24 1 3.1343 -0.7718 1.2127 25 1 1.7326 -0.1854 2.1365 26 1 0.4019 -2.1078 1.1352 27 1 1.6891 -2.5833 2.2639 28 1 3.5871 -5.1054 -0.3282 29 1 2.3168 -6.3444 -0.1878 30 1 2.2357 -5.1298 -1.4864 31 1 -0.2381 -3.8839 0.8378 32 1 0.0512 -4.5240 -0.7977 33 1 -2.6124 -7.9381 1.0350 34 1 2.0193 -3.2275 -1.9411 35 1 0.5166 -2.6275 -1.1964 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689644272.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:43 Heat of formation + Delta-G solvation = -4.466145 kcal Electronic energy + Delta-G solvation = -14927.379099 eV Core-core repulsion = 12665.224523 eV Total energy + Delta-G solvation = -2262.154575 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.59013 -35.53698 -32.62884 -30.82032 -28.64772 -27.89625 -25.68343 -24.13038 -22.45949 -20.61315 -18.84718 -17.24423 -16.30878 -15.52493 -14.81779 -14.57113 -14.17268 -14.09543 -13.45961 -13.19523 -13.07184 -12.70495 -12.46884 -12.17191 -11.68192 -11.46395 -11.23457 -11.19239 -10.98813 -10.77107 -10.59292 -10.33787 -10.00785 -9.84823 -9.62221 -9.26216 -8.61518 -7.83228 -7.24506 -6.09445 -4.06743 1.89889 2.62231 3.23305 3.31183 3.31624 4.36946 4.59524 4.74742 4.86660 4.99944 5.11607 5.20812 5.25172 5.46800 5.57494 5.61409 5.66453 5.79498 5.90185 5.98157 6.04149 6.06681 6.12456 6.21893 6.42014 6.56539 6.64626 6.78744 6.92873 7.54368 7.82413 7.97499 8.60697 8.99365 9.52122 11.03741 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.030913 B = 0.008872 C = 0.007936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.552357 B = 3155.350149 C = 3527.194871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.049 4.049 3 H 0.104 0.896 4 C -0.113 4.113 5 C -0.126 4.126 6 C 0.087 3.913 7 H 0.083 0.917 8 N -0.520 5.520 9 C 0.035 3.965 10 C 0.158 3.842 11 C -0.510 4.510 12 H 0.081 0.919 13 C 0.069 3.931 14 N -0.899 5.899 15 Si 0.872 3.128 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.268 1.268 19 C -0.109 4.109 20 S -0.279 6.279 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.015 0.985 31 H 0.030 0.970 32 H -0.015 1.015 33 H 0.264 0.736 34 H 0.100 0.900 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.037 14.277 -2.271 15.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.178 4.178 3 H 0.122 0.878 4 C -0.153 4.153 5 C -0.164 4.164 6 C -0.024 4.024 7 H 0.101 0.899 8 N -0.243 5.243 9 C -0.114 4.114 10 C 0.032 3.968 11 C -0.548 4.548 12 H 0.099 0.901 13 C -0.133 4.133 14 N -0.538 5.538 15 Si 0.699 3.301 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.193 1.193 19 C -0.259 4.259 20 S -0.053 6.053 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.033 0.967 31 H 0.048 0.952 32 H 0.003 0.997 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.561 14.428 -2.646 16.069 hybrid contribution -1.768 0.171 -0.319 1.804 sum 4.793 14.598 -2.965 15.649 Atomic orbital electron populations 1.22141 0.93407 1.03175 1.02294 1.23152 0.98695 1.01047 0.94858 0.87775 1.21761 1.01287 0.95990 0.96216 1.21645 1.00959 0.93314 1.00434 1.21939 0.99726 0.90150 0.90543 0.89930 1.62272 1.08256 1.01221 1.52527 1.22268 0.96140 0.99280 0.93689 1.20258 0.83767 0.98563 0.94217 1.21041 0.94686 0.97629 1.41459 0.90106 1.24894 0.98299 0.94926 0.95137 1.69887 1.18747 1.17626 1.47554 0.86910 0.81867 0.81784 0.79492 1.20285 1.21042 1.19295 1.24344 1.04660 0.93513 1.03345 1.86586 1.77662 1.08870 1.32158 0.91635 0.91794 0.91792 0.90786 0.90966 0.91111 0.89908 0.93242 0.90125 0.96684 0.95202 0.99735 0.92631 0.88132 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.74 37.16 0.32 -1.51 16 2 C -0.05 -0.59 3.44 -26.68 -0.09 -0.68 16 3 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.11 -1.36 5.33 -26.87 -0.14 -1.50 16 5 C -0.13 -1.92 4.40 -27.13 -0.12 -2.04 16 6 C 0.09 1.44 2.04 -67.87 -0.14 1.30 16 7 H 0.08 1.30 7.90 -51.93 -0.41 0.89 16 8 N -0.52 -10.51 4.70 -236.53 -1.11 -11.62 16 9 C 0.03 0.65 9.00 60.07 0.54 1.19 16 10 C 0.16 3.71 2.76 -4.98 -0.01 3.69 16 11 C -0.51 -14.25 9.10 -34.44 -0.31 -14.57 16 12 H 0.08 2.46 7.34 -52.49 -0.39 2.08 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 15 Si 0.87 21.28 27.47 -169.99 -4.67 16.61 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 19 C -0.11 -1.76 4.56 37.21 0.17 -1.59 16 20 S -0.28 -4.00 21.75 -107.50 -2.34 -6.34 16 21 H 0.06 0.94 5.17 -51.93 -0.27 0.67 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.86 8.05 -51.93 -0.42 0.45 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 1.17 4.52 -51.93 -0.23 0.94 16 27 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.05 0.79 8.02 -51.93 -0.42 0.37 16 29 H 0.08 1.67 6.92 -51.93 -0.36 1.31 16 30 H 0.01 0.27 6.78 -51.93 -0.35 -0.08 16 31 H 0.03 0.71 5.34 -51.93 -0.28 0.43 16 32 H -0.01 -0.35 6.30 -51.93 -0.33 -0.68 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.10 1.64 6.67 -51.93 -0.35 1.29 16 35 H 0.09 1.53 6.06 -51.93 -0.31 1.21 16 LS Contribution 271.55 15.07 4.09 4.09 Total: -1.00 -29.25 271.55 -8.53 -37.78 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.39 Total: -0.14 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 0.12 Total: -13.82 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: -0.34 Total: -38.18 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 16 Polarization: -4.00 SS G_CDS: -2.34 Total: -6.34 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.25 -8.53 -37.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689644272.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.312 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds