Wall clock time and date at job start Mon Mar 30 2020 03:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 112.90841 * 2 1 4 4 C 1.53777 * 113.61553 * 228.75111 * 2 1 3 5 5 H 1.09001 * 113.69684 * 156.31810 * 4 2 1 6 6 N 1.46902 * 113.61371 * 25.42963 * 4 2 1 7 7 C 1.46900 * 111.00239 * 157.99826 * 6 4 2 8 8 C 1.52996 * 109.47573 * 179.97438 * 7 6 4 9 9 H 1.09007 * 109.46977 * 59.99899 * 8 7 6 10 10 O 1.42897 * 109.47156 * 300.00478 * 8 7 6 11 11 C 1.50695 * 109.47602 * 180.02562 * 8 7 6 12 12 H 1.08000 * 119.99975 * 0.02562 * 11 8 7 13 13 C 1.37879 * 120.00196 * 180.02562 * 11 8 7 14 14 N 1.31513 * 119.99654 * 180.02562 * 13 11 8 15 15 Si 1.86795 * 120.00051 * 0.02562 * 13 11 8 16 16 H 1.48498 * 109.47280 * 89.99737 * 15 13 11 17 17 H 1.48500 * 109.47122 * 209.99873 * 15 13 11 18 18 H 1.48501 * 109.47047 * 329.99987 * 15 13 11 19 19 C 1.53780 * 87.08217 * 270.88406 * 4 2 1 20 20 C 1.53781 * 87.07900 * 334.56395 * 19 4 2 21 21 H 1.08993 * 113.61848 * 270.80100 * 20 19 4 22 22 O 1.42905 * 113.61237 * 139.97968 * 20 19 4 23 23 H 1.09003 * 109.46971 * 308.24967 * 1 2 3 24 24 H 1.09001 * 109.47643 * 68.25168 * 1 2 3 25 25 H 1.08998 * 109.47372 * 188.25541 * 1 2 3 26 26 H 1.08991 * 109.47257 * 171.74626 * 3 2 1 27 27 H 1.08995 * 109.47278 * 291.75105 * 3 2 1 28 28 H 1.08998 * 109.46855 * 51.74695 * 3 2 1 29 29 H 1.00901 * 111.00224 * 34.04452 * 6 4 2 30 30 H 1.08997 * 109.47213 * 300.00095 * 7 6 4 31 31 H 1.09007 * 109.47052 * 59.99911 * 7 6 4 32 32 H 0.96703 * 114.00273 * 299.99441 * 10 8 7 33 33 H 0.97002 * 119.99501 * 180.02562 * 14 13 11 34 34 H 1.09000 * 113.61269 * 220.01900 * 19 4 2 35 35 H 1.09003 * 113.61563 * 89.11204 * 19 4 2 36 36 H 0.96700 * 113.99562 * 79.50898 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1460 -0.9290 -1.0594 5 1 3.1590 -0.6508 -1.3502 6 7 1.2679 -1.1710 -2.2119 7 6 2.0435 -1.5974 -3.3844 8 6 1.0969 -1.8398 -4.5616 9 1 0.5632 -0.9183 -4.7945 10 8 0.1576 -2.8595 -4.2153 11 6 1.8925 -2.2778 -5.7641 12 1 2.9660 -2.3741 -5.6955 13 6 1.2499 -2.5557 -6.9520 14 7 1.9443 -2.9384 -8.0012 15 14 -0.6067 -2.3885 -7.0709 16 1 -0.9534 -1.0079 -7.4936 17 1 -1.1281 -3.3572 -8.0684 18 1 -1.2148 -2.6677 -5.7451 19 6 2.0929 -2.0425 -0.0001 20 6 2.1460 -0.9291 1.0593 21 1 3.1590 -0.6509 1.3500 22 8 1.2919 -1.1645 2.1805 23 1 -0.3633 0.6362 0.8071 24 1 -0.3634 0.3808 -0.9545 25 1 -0.3634 -1.0170 0.1476 26 1 3.2037 1.3482 0.1475 27 1 1.9162 1.8923 -0.9544 28 1 1.6809 1.9917 0.8070 29 1 0.7140 -0.3543 -2.4224 30 1 2.7603 -0.8198 -3.6482 31 1 2.5768 -2.5192 -3.1516 32 1 0.5629 -3.7095 -3.9954 33 1 1.4923 -3.1336 -8.8370 34 1 2.9717 -2.6874 -0.0001 35 1 1.1568 -2.6009 -0.0001 36 1 1.6549 -1.7841 2.8282 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930631069.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:43 Heat of formation + Delta-G solvation = -81.815545 kcal Electronic energy + Delta-G solvation = -16655.790650 eV Core-core repulsion = 13947.529082 eV Total energy + Delta-G solvation = -2708.261568 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.14129 -36.57549 -35.40305 -32.97437 -32.20326 -30.40699 -28.23063 -27.36363 -24.70693 -22.82435 -22.06627 -20.52415 -18.17977 -17.52589 -17.19969 -15.48277 -15.10172 -14.98678 -14.67924 -14.33747 -13.76770 -13.60707 -13.07231 -12.89351 -12.72032 -12.26676 -12.15769 -11.92214 -11.61552 -11.48218 -11.29766 -10.90801 -10.73531 -10.53660 -10.30820 -10.20500 -9.84235 -9.62584 -9.00933 -8.59759 -8.18745 -7.86829 -6.11319 -4.22511 3.41212 3.50844 3.79127 4.08107 4.42738 4.49729 4.56396 4.83844 4.89540 4.98813 5.22941 5.24803 5.40661 5.50714 5.67480 5.74414 5.92322 5.94295 5.97593 6.01152 6.04841 6.11734 6.18392 6.33654 6.47848 6.58583 6.68073 7.35228 7.45238 7.60120 7.69584 7.86651 8.31698 8.85565 9.14375 9.54039 10.99400 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.046838 B = 0.005887 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.656274 B = 4755.381621 C = 4827.020771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.077 4.077 3 C -0.139 4.139 4 C 0.068 3.932 5 H 0.067 0.933 6 N -0.664 5.664 7 C 0.043 3.957 8 C 0.199 3.801 9 H 0.049 0.951 10 O -0.571 6.571 11 C -0.565 4.565 12 H 0.070 0.930 13 C 0.083 3.917 14 N -0.895 5.895 15 Si 0.872 3.128 16 H -0.289 1.289 17 H -0.296 1.296 18 H -0.215 1.215 19 C -0.154 4.154 20 C 0.081 3.919 21 H 0.076 0.924 22 O -0.556 6.556 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.337 0.663 30 H 0.026 0.974 31 H 0.065 0.935 32 H 0.355 0.645 33 H 0.264 0.736 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.280 4.969 17.805 18.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.077 4.077 3 C -0.197 4.197 4 C -0.043 4.043 5 H 0.085 0.915 6 N -0.296 5.296 7 C -0.086 4.086 8 C 0.141 3.859 9 H 0.067 0.933 10 O -0.376 6.376 11 C -0.603 4.603 12 H 0.088 0.912 13 C -0.121 4.121 14 N -0.532 5.532 15 Si 0.699 3.301 16 H -0.216 1.216 17 H -0.223 1.223 18 H -0.137 1.137 19 C -0.192 4.192 20 C 0.022 3.978 21 H 0.093 0.907 22 O -0.360 6.360 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.156 0.844 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.200 0.800 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.692 5.190 17.378 18.149 hybrid contribution 0.685 0.106 -0.299 0.755 sum -0.006 5.296 17.079 17.881 Atomic orbital electron populations 1.21231 0.91769 1.02776 1.00746 1.22242 0.97480 0.93770 0.94227 1.21784 1.00178 0.95710 1.02002 1.22834 0.95509 0.95424 0.90561 0.91510 1.60633 1.24236 1.39379 1.05334 1.22703 0.96096 0.99290 0.90519 1.19689 0.87218 0.88644 0.90317 0.93281 1.86650 1.37561 1.22845 1.90529 1.21516 0.95574 1.48556 0.94660 0.91163 1.24995 0.99337 0.92758 0.95039 1.69964 1.36626 1.44720 1.01898 0.87008 0.85879 0.77199 0.80050 1.21555 1.22312 1.13732 1.23724 1.02950 0.97088 0.95472 1.23391 0.92773 0.96869 0.84781 0.90674 1.86528 1.47028 1.67787 1.34678 0.93002 0.92551 0.91486 0.92756 0.92256 0.92393 0.84371 0.95559 0.91620 0.79958 0.92619 0.92008 0.88375 0.78081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 7.74 37.15 0.29 -1.11 16 2 C -0.08 -0.93 1.26 -153.70 -0.19 -1.13 16 3 C -0.14 -1.50 9.17 37.16 0.34 -1.16 16 4 C 0.07 0.94 3.56 -66.90 -0.24 0.70 16 5 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 6 N -0.66 -11.05 5.87 -105.87 -0.62 -11.67 16 7 C 0.04 0.84 5.15 -3.83 -0.02 0.82 16 8 C 0.20 4.65 2.52 -27.89 -0.07 4.58 16 9 H 0.05 1.18 7.57 -51.92 -0.39 0.79 16 10 O -0.57 -13.17 10.01 -35.23 -0.35 -13.53 16 11 C -0.57 -15.75 9.34 -34.44 -0.32 -16.07 16 12 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 13 C 0.08 2.40 5.47 -17.82 -0.10 2.31 16 14 N -0.89 -27.51 13.96 55.43 0.77 -26.74 16 15 Si 0.87 22.06 26.99 -169.99 -4.59 17.47 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 17 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 18 H -0.22 -5.35 5.31 56.52 0.30 -5.05 16 19 C -0.15 -1.96 7.36 -25.92 -0.19 -2.15 16 20 C 0.08 0.91 4.63 -25.92 -0.12 0.79 16 21 H 0.08 0.73 8.01 -51.93 -0.42 0.31 16 22 O -0.56 -6.09 12.82 -35.23 -0.45 -6.54 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.73 6.93 -51.93 -0.36 0.37 16 25 H 0.07 0.96 7.25 -51.93 -0.38 0.58 16 26 H 0.05 0.53 8.01 -51.93 -0.42 0.12 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.34 5.53 7.16 -39.29 -0.28 5.25 16 30 H 0.03 0.52 8.13 -51.93 -0.42 0.09 16 31 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16 32 H 0.35 7.45 9.04 45.56 0.41 7.86 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.10 1.40 7.63 -51.93 -0.40 1.01 16 36 H 0.37 2.47 9.12 45.56 0.42 2.89 16 LS Contribution 289.06 15.07 4.36 4.36 Total: -1.00 -31.64 289.06 -5.92 -37.56 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -4.41 Total: 11.51 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -0.62 Total: -12.42 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.15 Total: -38.41 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.80 Total: -20.07 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.59 Total: 17.47 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.64 -5.92 -37.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930631069.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.253 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds