Wall clock time and date at job start Mon Mar 30 2020 03:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30207 * 1 3 3 Si 1.86808 * 120.00007 * 2 1 4 4 H 1.48493 * 109.47095 * 269.99976 * 3 2 1 5 5 H 1.48499 * 109.46944 * 29.99807 * 3 2 1 6 6 H 1.48502 * 109.47007 * 149.99813 * 3 2 1 7 7 C 1.41044 * 120.00414 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00395 * 180.02562 * 7 2 1 9 9 C 1.38432 * 119.99400 * 0.02562 * 7 2 1 10 10 N 1.33555 * 125.22812 * 179.97438 * 9 7 2 11 11 C 1.31611 * 109.14739 * 179.97438 * 10 9 7 12 12 C 1.42007 * 107.55312 * 0.22593 * 11 10 9 13 13 C 1.35881 * 120.28679 * 180.34304 * 12 11 10 14 14 C 1.39861 * 122.26217 * 359.71670 * 13 12 11 15 15 C 1.35448 * 121.98641 * 0.02562 * 14 13 12 16 16 C 1.46850 * 119.31226 * 359.97438 * 15 14 13 17 17 N 1.31158 * 121.18425 * 180.02562 * 16 15 14 18 18 C 1.25004 * 119.99871 * 359.97438 * 17 16 15 19 19 O 9.19071 * 94.33763 * 179.97438 * 2 1 3 20 20 O 1.35227 * 125.23506 * 0.58173 * 9 7 2 21 21 H 0.97001 * 120.00331 * 0.02562 * 1 2 3 22 22 H 1.07997 * 118.86743 * 179.73148 * 13 12 11 23 23 H 1.07994 * 119.01004 * 179.97438 * 14 13 12 24 24 H 1.07999 * 120.34658 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3021 0.0000 0.0000 3 14 2.2361 1.6178 0.0000 4 1 2.4836 2.0465 -1.4000 5 1 1.4335 2.6527 0.7000 6 1 3.5336 1.4402 0.7001 7 6 2.0074 -1.2214 0.0005 8 1 3.0873 -1.2214 0.0010 9 6 1.3152 -2.4203 0.0005 10 7 1.8747 -3.6329 0.0005 11 6 0.9267 -4.5458 0.0011 12 6 -0.3209 -3.8676 -0.0039 13 6 -1.4834 -4.5711 0.0026 14 6 -1.5098 -5.9695 0.0083 15 6 -0.3746 -6.7085 0.0084 16 6 0.9265 -6.0276 0.0016 17 7 2.0484 -6.7070 0.0008 18 6 2.0224 -7.9567 0.0065 19 8 1.9972 -9.1644 0.0041 20 8 -0.0314 -2.5436 -0.0112 21 1 -0.4851 0.8400 -0.0004 22 1 -2.4192 -4.0319 0.0031 23 1 -2.4639 -6.4753 0.0138 24 1 -0.4259 -7.7872 0.0133 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396119089.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:20 Heat of formation + Delta-G solvation = 26.253864 kcal Electronic energy + Delta-G solvation = -14585.345074 eV Core-core repulsion = 11851.986567 eV Total energy + Delta-G solvation = -2733.358507 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.048 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.44671 -38.94516 -37.41189 -35.18182 -34.26391 -33.16761 -29.67585 -28.23981 -26.59035 -22.92734 -21.78546 -20.96580 -19.07746 -18.31246 -17.21422 -16.22286 -15.84642 -15.62864 -15.26633 -15.01006 -14.64201 -14.23314 -13.22615 -12.63231 -12.18705 -12.04857 -11.96319 -11.70481 -11.43783 -10.85765 -10.77306 -10.53575 -9.99607 -9.88494 -9.83451 -8.85002 -7.99842 -7.55882 -6.86058 -5.12508 1.11864 1.75556 2.19321 2.68495 2.72243 2.80494 3.18790 3.42780 3.52662 3.65925 4.16046 4.46925 4.91550 5.06960 5.51646 5.64000 5.92490 6.20180 6.28755 6.38713 6.67645 6.95361 7.04904 7.18069 7.33472 7.60213 7.65606 7.86440 8.08501 8.69159 9.30928 9.44910 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.046138 B = 0.006739 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.726404 B = 4153.915620 C = 4750.788528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.728 5.728 2 C 0.060 3.940 3 Si 0.944 3.056 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.250 1.250 7 C -0.370 4.370 8 H 0.128 0.872 9 C 0.362 3.638 10 N -0.606 5.606 11 C 0.169 3.831 12 C -0.046 4.046 13 C -0.076 4.076 14 C -0.166 4.166 15 C -0.132 4.132 16 C 0.033 3.967 17 N -0.423 5.423 18 C 0.565 3.435 19 O -0.386 6.386 20 O -0.201 6.201 21 H 0.301 0.699 22 H 0.113 0.887 23 H 0.118 0.882 24 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 -0.337 0.024 2.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.350 5.350 2 C -0.170 4.170 3 Si 0.765 3.235 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.173 1.173 7 C -0.401 4.401 8 H 0.146 0.854 9 C 0.190 3.810 10 N -0.339 5.339 11 C 0.035 3.965 12 C -0.098 4.098 13 C -0.096 4.096 14 C -0.186 4.186 15 C -0.153 4.153 16 C -0.071 4.071 17 N -0.161 5.161 18 C 0.267 3.733 19 O -0.245 6.245 20 O -0.098 6.098 21 H 0.113 0.887 22 H 0.131 0.869 23 H 0.136 0.864 24 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.137 -0.272 0.018 1.169 hybrid contribution -0.850 0.354 -0.003 0.921 sum -1.987 0.082 0.015 1.989 Atomic orbital electron populations 1.69492 1.08331 1.32001 1.25157 1.26577 0.95299 1.03212 0.91900 0.85685 0.80317 0.77272 0.80251 1.18277 1.19221 1.17332 1.18917 0.96162 0.85856 1.39117 0.85435 1.22218 0.76509 0.93676 0.88606 1.70493 1.30376 0.96784 1.36283 1.20522 0.89437 0.91341 0.95177 1.20071 0.96505 0.83561 1.09699 1.19222 0.94588 0.93005 1.02775 1.19714 0.97382 0.91917 1.09610 1.22292 0.91279 0.97524 1.04253 1.18070 0.83392 0.87376 1.18277 1.61873 1.25940 0.93543 1.34773 1.26121 0.68421 0.88092 0.90677 1.90899 1.52789 1.05903 1.74902 1.85256 1.25808 1.20770 1.77969 0.88725 0.86912 0.86370 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -16.50 11.91 55.61 0.66 -15.84 14 2 C 0.06 1.29 5.51 -17.18 -0.09 1.19 14 3 Si 0.94 15.45 29.57 -169.99 -5.03 10.42 14 4 H -0.26 -4.16 7.11 56.52 0.40 -3.76 14 5 H -0.27 -4.23 7.11 56.52 0.40 -3.83 14 6 H -0.25 -4.03 7.11 56.52 0.40 -3.63 14 7 C -0.37 -8.88 9.42 -38.45 -0.36 -9.24 14 8 H 0.13 2.85 7.86 -52.49 -0.41 2.44 14 9 C 0.36 9.61 7.57 -16.73 -0.13 9.49 14 10 N -0.61 -16.40 11.27 -9.35 -0.11 -16.51 14 11 C 0.17 4.27 7.46 -82.43 -0.62 3.65 14 12 C -0.05 -1.13 7.34 -38.98 -0.29 -1.42 14 13 C -0.08 -1.55 9.89 -39.82 -0.39 -1.94 14 14 C -0.17 -2.95 9.88 -39.97 -0.40 -3.35 14 15 C -0.13 -2.47 9.43 -37.10 -0.35 -2.82 14 16 C 0.03 0.74 6.91 -80.59 -0.56 0.18 14 17 N -0.42 -8.87 10.09 18.87 0.19 -8.68 14 18 C 0.56 10.18 15.03 49.98 0.75 10.93 14 19 O -0.39 -6.79 17.99 5.97 0.11 -6.68 14 20 O -0.20 -5.31 9.03 -0.42 0.00 -5.31 14 21 H 0.30 5.91 8.28 -40.82 -0.34 5.57 14 22 H 0.11 2.03 8.06 -52.49 -0.42 1.60 14 23 H 0.12 1.68 8.06 -52.49 -0.42 1.26 14 24 H 0.12 1.87 7.22 -52.49 -0.38 1.49 14 LS Contribution 239.10 15.07 3.60 3.60 Total: -1.00 -27.40 239.10 -3.77 -31.17 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -0.77 Total: 1.14 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -2.43 Total: 6.68 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.75 Total: -41.02 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.10 Total: -11.99 kcal Atomic # 14 Polarization: 15.45 SS G_CDS: -5.03 Total: 10.42 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -27.40 -3.77 -31.17 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396119089.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.422 kcal (2) G-P(sol) polarization free energy of solvation -27.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds