Wall clock time and date at job start Mon Mar 30 2020 02:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99936 * 2 1 4 4 C 1.50697 * 109.46797 * 179.97438 * 3 2 1 5 5 C 1.39857 * 125.89588 * 0.02562 * 4 3 2 6 6 C 1.35465 * 107.90084 * 179.69905 * 5 4 3 7 7 Cl 1.73605 * 126.14246 * 180.28009 * 6 5 4 8 8 N 1.34987 * 107.71635 * 0.42408 * 6 5 4 9 9 C 1.46491 * 126.03540 * 179.84016 * 8 6 5 10 10 C 1.50702 * 109.46957 * 269.71262 * 9 8 6 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 9 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 9 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 N 1.30843 * 125.88584 * 179.97438 * 4 3 2 19 19 H 1.08997 * 109.47205 * 299.99560 * 1 2 3 20 20 H 1.08993 * 109.47480 * 59.99919 * 1 2 3 21 21 H 1.09000 * 109.47141 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.46744 * 60.00555 * 3 2 1 23 23 H 1.08994 * 109.47277 * 300.00486 * 3 2 1 24 24 H 1.08004 * 126.04927 * 359.94046 * 5 4 3 25 25 H 1.09004 * 109.47166 * 149.71528 * 9 8 6 26 26 H 1.08994 * 109.47507 * 29.71235 * 9 8 6 27 27 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1864 0.0006 5 6 4.2404 -0.0078 0.0006 6 6 5.5578 0.3076 -0.0055 7 17 6.8799 -0.8174 -0.0149 8 7 5.6579 1.6538 0.0003 9 6 6.9032 2.4253 0.0001 10 6 7.3307 2.6895 1.4209 11 1 6.7346 2.3193 2.2419 12 6 8.4862 3.3985 1.6726 13 7 8.8621 3.6243 2.9125 14 14 9.5175 4.0382 0.2526 15 1 9.0577 5.4006 -0.1186 16 1 10.9441 4.0916 0.6617 17 1 9.3706 3.1312 -0.9139 18 7 4.3608 2.1826 0.0003 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6886 1.8463 0.8900 23 1 1.6885 1.8464 -0.8899 24 1 3.8256 -1.0050 0.0011 25 1 6.7431 3.3734 -0.5134 26 1 7.6806 1.8603 -0.5141 27 1 9.6747 4.1234 3.0896 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085018922.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:06 Heat of formation + Delta-G solvation = 4.443439 kcal Electronic energy + Delta-G solvation = -13584.050210 eV Core-core repulsion = 10983.146177 eV Total energy + Delta-G solvation = -2600.904033 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.056 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.23658 -38.73556 -37.77983 -35.77047 -33.95928 -31.26611 -30.33864 -28.21427 -26.40575 -24.40731 -22.02511 -21.10211 -19.28768 -18.29386 -17.13002 -16.96297 -16.50084 -16.10251 -15.62141 -15.24416 -14.96752 -14.57690 -13.83300 -13.67050 -13.37742 -13.18130 -12.78066 -12.60435 -12.46125 -12.25428 -12.08135 -11.84440 -11.53874 -10.92315 -10.75526 -10.05084 -9.54126 -8.43085 -6.54537 0.51341 0.75832 1.32618 1.34737 1.43934 1.62157 1.70969 2.23998 2.76273 2.89486 3.71556 4.06564 4.28257 4.43238 4.45488 4.50581 4.65888 4.68942 4.76176 4.92620 4.99147 5.16262 5.54388 5.68577 6.13572 6.21418 6.47326 6.64246 7.08650 8.73462 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.034506 B = 0.007118 C = 0.006395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.269474 B = 3932.807972 C = 4377.382684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.157 3.843 4 C 0.058 3.942 5 C -0.241 4.241 6 C 0.115 3.885 7 Cl 0.001 6.999 8 N -0.342 5.342 9 C 0.235 3.765 10 C -0.550 4.550 11 H 0.027 0.973 12 C 0.025 3.975 13 N -0.934 5.934 14 Si 0.945 3.055 15 H -0.260 1.260 16 H -0.273 1.273 17 H -0.239 1.239 18 N -0.300 5.300 19 H 0.051 0.949 20 H 0.056 0.944 21 H 0.102 0.898 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.175 0.825 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.466 -6.919 -9.307 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C 0.079 3.921 4 C -0.107 4.107 5 C -0.271 4.271 6 C -0.040 4.040 7 Cl 0.029 6.971 8 N -0.125 5.125 9 C 0.116 3.884 10 C -0.588 4.588 11 H 0.046 0.954 12 C -0.176 4.176 13 N -0.572 5.572 14 Si 0.766 3.234 15 H -0.184 1.184 16 H -0.198 1.198 17 H -0.162 1.162 18 N -0.127 5.127 19 H 0.070 0.930 20 H 0.075 0.925 21 H 0.121 0.879 22 H 0.097 0.903 23 H 0.107 0.893 24 H 0.192 0.808 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.833 -5.773 -9.190 15.334 hybrid contribution 0.700 -0.340 0.187 0.800 sum -10.133 -6.113 -9.003 14.869 Atomic orbital electron populations 1.22993 0.78357 1.04300 1.01277 1.87819 1.22063 1.26623 1.95716 1.20350 0.83483 0.85533 1.02753 1.22346 0.96995 0.90801 1.00521 1.21032 0.88281 1.01087 1.16724 1.22048 0.91706 0.83759 1.06525 1.98359 1.45906 1.55821 1.97002 1.49005 1.06338 1.03228 1.53960 1.19886 0.78168 0.92743 0.97621 1.21156 1.09509 1.37395 0.90790 0.95425 1.25778 0.97944 0.94837 0.98992 1.70016 1.25144 1.40572 1.21457 0.85757 0.78106 0.80204 0.79316 1.18431 1.19756 1.16171 1.77312 0.86970 1.22171 1.26210 0.92989 0.92496 0.87936 0.90306 0.89274 0.80794 0.92428 0.91599 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 15 2 O -0.40 -9.90 10.04 -148.98 -1.50 -11.40 15 3 C 0.16 4.15 6.56 71.23 0.47 4.61 15 4 C 0.06 2.11 7.19 43.10 0.31 2.42 15 5 C -0.24 -8.82 10.12 22.02 0.22 -8.60 15 6 C 0.11 4.71 7.46 83.57 0.62 5.33 15 7 Cl 0.00 0.04 28.76 -2.72 -0.08 -0.04 15 8 N -0.34 -15.82 3.60 -341.61 -1.23 -17.04 15 9 C 0.24 11.37 5.10 85.64 0.44 11.81 15 10 C -0.55 -31.82 9.94 25.60 0.25 -31.56 15 11 H 0.03 1.84 8.06 -2.91 -0.02 1.82 15 12 C 0.02 1.40 5.47 84.66 0.46 1.86 15 13 N -0.93 -57.02 13.96 21.45 0.30 -56.72 15 14 Si 0.95 41.22 27.47 68.60 1.88 43.10 15 15 H -0.26 -10.88 7.11 99.48 0.71 -10.18 15 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15 17 H -0.24 -9.38 6.54 99.48 0.65 -8.73 15 18 N -0.30 -13.18 12.57 -47.39 -0.60 -13.78 15 19 H 0.05 0.69 8.14 -2.39 -0.02 0.67 15 20 H 0.06 0.69 8.14 -2.39 -0.02 0.67 15 21 H 0.10 1.22 8.14 -2.39 -0.02 1.20 15 22 H 0.08 1.93 8.14 -2.39 -0.02 1.91 15 23 H 0.09 1.97 8.14 -2.39 -0.02 1.95 15 24 H 0.17 5.47 7.91 -2.91 -0.02 5.45 15 25 H 0.06 2.68 7.58 -2.38 -0.02 2.66 15 26 H 0.07 2.98 6.84 -2.39 -0.02 2.96 15 27 H 0.27 15.42 8.31 -92.71 -0.77 14.65 15 Total: -1.00 -68.09 259.40 3.93 -64.17 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: 1.12 Total: 4.17 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: 4.03 Total: -12.47 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -1.52 Total: -87.54 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -1.50 Total: -11.40 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.88 Total: 43.10 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -0.08 Total: -0.04 kcal Total: -68.09 3.93 -64.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085018922.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.611 kcal (2) G-P(sol) polarization free energy of solvation -68.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds