Wall clock time and date at job start Mon Mar 30 2020 02:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37633 * 120.12682 * 2 1 4 4 C 1.38613 * 120.25220 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.75328 * 179.97438 * 4 3 2 6 6 F 1.39898 * 109.46818 * 90.00724 * 5 4 3 7 7 F 1.39901 * 109.47064 * 210.00320 * 5 4 3 8 8 F 1.39899 * 109.47275 * 330.00198 * 5 4 3 9 9 C 1.38663 * 120.49759 * 0.02562 * 4 3 2 10 10 C 1.37596 * 120.24765 * 359.97438 * 9 4 3 11 11 C 1.40692 * 120.12906 * 179.97438 * 2 1 3 12 12 C 1.41398 * 120.24497 * 359.74632 * 11 2 1 13 13 H 1.08002 * 119.99605 * 334.15492 * 12 11 2 14 14 C 1.39936 * 120.00489 * 154.15665 * 12 11 2 15 15 N 1.30830 * 119.99752 * 343.50565 * 14 12 11 16 16 Si 1.86803 * 120.00411 * 163.50991 * 14 12 11 17 17 H 1.48500 * 109.47085 * 59.99518 * 16 14 12 18 18 H 1.48497 * 109.47246 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46882 * 299.99775 * 16 14 12 20 20 H 1.08996 * 109.46612 * 270.02059 * 1 2 3 21 21 H 1.08998 * 109.47026 * 30.01778 * 1 2 3 22 22 H 1.08997 * 109.46748 * 150.02214 * 1 2 3 23 23 H 1.08000 * 119.87662 * 359.95796 * 3 2 1 24 24 H 1.07997 * 119.87483 * 180.02562 * 9 4 3 25 25 H 1.07999 * 120.13151 * 180.02562 * 10 9 4 26 26 H 0.97006 * 119.99913 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1904 0.0000 4 6 3.5840 1.1934 0.0005 5 6 4.3290 2.5034 -0.0001 6 9 4.5591 2.9095 1.3188 7 9 5.5527 2.3436 -0.6590 8 9 3.5669 3.4730 -0.6604 9 6 4.2903 0.0002 0.0005 10 6 3.6205 -1.2017 0.0005 11 6 2.2133 -1.2168 0.0005 12 6 1.5143 -2.4460 0.0065 13 1 0.5172 -2.4981 0.4182 14 6 2.1144 -3.5948 -0.5210 15 7 3.1611 -3.4878 -1.2986 16 14 1.4210 -5.2812 -0.1151 17 1 0.0143 -5.3639 -0.5836 18 1 2.2303 -6.3255 -0.7931 19 1 1.4669 -5.4948 1.3539 20 1 -0.3632 0.0004 1.0277 21 1 -0.3633 0.8898 -0.5141 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6579 2.1258 -0.0007 24 1 5.3702 0.0143 0.0014 25 1 4.1725 -2.1300 0.0010 26 1 3.5769 -4.2841 -1.6645 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085210396.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:28 Heat of formation + Delta-G solvation = -165.698700 kcal Electronic energy + Delta-G solvation = -15740.748362 eV Core-core repulsion = 12560.749770 eV Total energy + Delta-G solvation = -3179.998592 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.95865 -48.49063 -48.42623 -39.72552 -35.79879 -33.61724 -31.88876 -28.66579 -27.55610 -25.39783 -22.83751 -21.69861 -19.33219 -19.26808 -19.09744 -18.54832 -17.17066 -15.88872 -15.75553 -15.33276 -15.18015 -14.94294 -14.87248 -14.67239 -14.64353 -14.34526 -14.04516 -13.65619 -13.20315 -12.96619 -12.85326 -12.64373 -12.42837 -12.13441 -11.51221 -11.36909 -11.13016 -9.54285 -9.32927 -8.74700 -6.48401 0.62941 1.00500 1.40608 1.49114 1.53420 1.96646 2.17433 2.55113 3.20721 3.35876 3.43828 3.80023 4.31959 4.35686 4.68300 4.85939 5.02896 5.05649 5.13890 5.28892 5.31702 5.63267 5.74249 5.87272 6.00685 6.21865 6.54145 6.80748 6.86972 8.20679 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.043158 B = 0.007617 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.617002 B = 3675.157493 C = 4083.480851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.214 4.214 3 C -0.047 4.047 4 C -0.324 4.324 5 C 0.524 3.476 6 F -0.191 7.191 7 F -0.190 7.190 8 F -0.187 7.187 9 C -0.066 4.066 10 C -0.191 4.191 11 C 0.101 3.899 12 C -0.468 4.468 13 H 0.093 0.907 14 C 0.035 3.965 15 N -0.810 5.810 16 Si 0.986 3.014 17 H -0.255 1.255 18 H -0.270 1.270 19 H -0.259 1.259 20 H 0.059 0.941 21 H 0.063 0.937 22 H 0.057 0.943 23 H 0.122 0.878 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 2.759 1.686 3.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.215 4.215 3 C -0.066 4.066 4 C -0.327 4.327 5 C 0.470 3.530 6 F -0.172 7.172 7 F -0.172 7.172 8 F -0.169 7.169 9 C -0.085 4.085 10 C -0.211 4.211 11 C 0.098 3.902 12 C -0.496 4.496 13 H 0.111 0.889 14 C -0.183 4.183 15 N -0.434 5.434 16 Si 0.806 3.194 17 H -0.179 1.179 18 H -0.194 1.194 19 H -0.183 1.183 20 H 0.078 0.922 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.140 0.860 24 H 0.129 0.871 25 H 0.129 0.871 26 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.060 2.665 1.522 3.247 hybrid contribution 0.321 -0.419 -0.050 0.530 sum -0.739 2.246 1.472 2.786 Atomic orbital electron populations 1.20404 0.90493 1.01667 1.01140 1.20131 0.96681 0.92107 1.12596 1.20393 0.91871 0.97705 0.96608 1.19319 0.94812 0.90604 1.27934 1.18236 0.76612 0.85270 0.72851 1.93142 1.94874 1.92065 1.37158 1.93099 1.46809 1.95795 1.81453 1.93098 1.75899 1.66536 1.81332 1.20527 0.98457 0.91873 0.97650 1.21238 0.94947 0.96215 1.08671 1.18010 0.92272 0.93142 0.86802 1.20026 1.02701 0.92826 1.34013 0.88873 1.26909 0.94199 1.05414 0.91738 1.69859 1.18508 1.33962 1.21064 0.85177 0.79439 0.75032 0.79754 1.17933 1.19407 1.18317 0.92203 0.91849 0.92454 0.86026 0.87146 0.87126 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.01 9.40 71.24 0.67 -2.34 15 2 C -0.21 -9.75 5.94 -19.41 -0.12 -9.87 15 3 C -0.05 -2.05 9.03 22.22 0.20 -1.85 15 4 C -0.32 -14.31 5.48 -19.67 -0.11 -14.41 15 5 C 0.52 20.49 3.36 71.23 0.24 20.72 15 6 F -0.19 -7.23 17.30 44.97 0.78 -6.45 15 7 F -0.19 -7.31 16.44 44.97 0.74 -6.57 15 8 F -0.19 -6.95 16.44 44.97 0.74 -6.21 15 9 C -0.07 -3.09 9.37 22.22 0.21 -2.89 15 10 C -0.19 -9.71 8.69 22.73 0.20 -9.51 15 11 C 0.10 5.09 5.56 -21.29 -0.12 4.97 15 12 C -0.47 -22.87 8.12 23.46 0.19 -22.68 15 13 H 0.09 4.26 6.89 -2.91 -0.02 4.24 15 14 C 0.04 1.62 5.16 85.25 0.44 2.06 15 15 N -0.81 -39.50 10.98 21.82 0.24 -39.26 15 16 Si 0.99 34.78 29.59 68.60 2.03 36.81 15 17 H -0.26 -8.65 7.11 99.48 0.71 -7.94 15 18 H -0.27 -9.13 7.11 99.48 0.71 -8.42 15 19 H -0.26 -8.99 7.11 99.48 0.71 -8.28 15 20 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 21 H 0.06 2.06 8.09 -2.39 -0.02 2.04 15 22 H 0.06 2.20 6.79 -2.39 -0.02 2.18 15 23 H 0.12 4.61 7.59 -2.91 -0.02 4.59 15 24 H 0.11 4.71 7.59 -2.91 -0.02 4.69 15 25 H 0.11 5.79 6.22 -2.91 -0.02 5.77 15 26 H 0.29 12.92 8.30 -92.70 -0.77 12.15 15 Total: -1.00 -51.98 241.77 7.54 -44.43 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.21 Total: 13.05 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 1.80 Total: -35.80 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.24 Total: -39.26 kcal Atomic # 9 Polarization: -21.49 SS G_CDS: 2.26 Total: -19.23 kcal Atomic # 14 Polarization: 34.78 SS G_CDS: 2.03 Total: 36.81 kcal Total: -51.98 7.54 -44.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085210396.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.268 kcal (2) G-P(sol) polarization free energy of solvation -51.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds