Wall clock time and date at job start Mon Mar 30 2020 02:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47153 * 240.00478 * 3 2 1 5 5 H 1.48496 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47153 * 120.00463 * 3 2 1 7 7 C 1.37879 * 120.00523 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00519 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99645 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47017 * 60.00160 * 9 7 2 11 11 C 1.50696 * 109.47155 * 179.97438 * 9 7 2 12 12 C 1.38230 * 120.00346 * 239.99802 * 11 9 7 13 13 C 1.38235 * 120.00326 * 180.02562 * 12 11 9 14 14 C 1.38234 * 119.99814 * 359.97438 * 13 12 11 15 15 C 1.38239 * 120.00062 * 0.02871 * 14 13 12 16 16 C 1.38235 * 120.00123 * 359.97128 * 15 14 13 17 17 C 1.52999 * 109.47183 * 300.00034 * 9 7 2 18 18 F 1.39901 * 109.47277 * 300.00257 * 17 9 7 19 19 F 1.39905 * 109.46919 * 60.00359 * 17 9 7 20 20 F 1.39897 * 109.47244 * 179.97438 * 17 9 7 21 21 H 0.97001 * 120.00509 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.00356 * 359.97438 * 12 11 9 23 23 H 1.08000 * 120.00616 * 179.70664 * 13 12 11 24 24 H 1.08001 * 120.00299 * 179.97438 * 14 13 12 25 25 H 1.08005 * 120.00087 * 180.02562 * 15 14 13 26 26 H 1.07999 * 120.00181 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 6 2.2304 -3.6445 -0.0018 12 6 2.2239 -4.5584 -1.0389 13 6 3.1218 -5.6094 -1.0398 14 6 4.0268 -5.7461 -0.0038 15 6 4.0333 -4.8323 1.0334 16 6 3.1353 -3.7813 1.0343 17 6 0.3720 -2.5805 1.2490 18 9 1.1767 -2.5066 2.3910 19 9 -0.5372 -1.5172 1.2495 20 9 -0.3279 -3.7918 1.2487 21 1 -0.4851 0.8400 0.0004 22 1 1.5166 -4.4519 -1.8481 23 1 3.1136 -6.3261 -1.8476 24 1 4.7281 -6.5675 -0.0042 25 1 4.7406 -4.9389 1.8427 26 1 3.1407 -3.0671 1.8444 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114257318.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:00 Heat of formation + Delta-G solvation = -118.897208 kcal Electronic energy + Delta-G solvation = -16453.668618 eV Core-core repulsion = 13275.699491 eV Total energy + Delta-G solvation = -3177.969127 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.42309 -46.07971 -45.61740 -38.56811 -34.00445 -31.57453 -30.28027 -27.84724 -24.54853 -22.46535 -21.90900 -20.21844 -17.22622 -16.88627 -16.56156 -16.05270 -15.42033 -14.76177 -14.30588 -13.90502 -13.15504 -12.97757 -12.63463 -12.52057 -12.42386 -12.17319 -12.07260 -11.87675 -11.77369 -11.22612 -10.87294 -10.66101 -10.60172 -10.19425 -9.73284 -9.58009 -8.59114 -8.30944 -7.99901 -6.15639 -4.35673 1.98644 2.01742 3.23998 3.28574 3.31359 4.23341 4.36476 4.62018 4.99401 5.41294 5.45746 5.52787 5.72544 5.86228 5.90528 6.11343 6.21025 6.32456 6.58167 6.69775 6.96963 7.04119 7.11189 7.47550 7.61703 7.69068 7.88746 8.64155 9.29630 10.76396 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.028380 B = 0.011574 C = 0.009705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.380437 B = 2418.723344 C = 2884.419868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.060 3.940 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.072 0.928 9 C 0.045 3.955 10 H 0.070 0.930 11 C -0.051 4.051 12 C -0.116 4.116 13 C -0.129 4.129 14 C -0.139 4.139 15 C -0.128 4.128 16 C -0.105 4.105 17 C 0.434 3.566 18 F -0.206 7.206 19 F -0.138 7.138 20 F -0.228 7.228 21 H 0.266 0.734 22 H 0.118 0.882 23 H 0.113 0.887 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.620 -6.355 0.159 7.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.147 4.147 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.090 0.910 9 C 0.026 3.974 10 H 0.088 0.912 11 C -0.051 4.051 12 C -0.134 4.134 13 C -0.147 4.147 14 C -0.157 4.157 15 C -0.147 4.147 16 C -0.123 4.123 17 C 0.379 3.621 18 F -0.187 7.187 19 F -0.119 7.119 20 F -0.210 7.210 21 H 0.076 0.924 22 H 0.136 0.864 23 H 0.131 0.869 24 H 0.129 0.871 25 H 0.132 0.868 26 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.406 -6.212 0.182 7.087 hybrid contribution 0.245 0.837 0.238 0.904 sum 3.651 -5.375 0.420 6.511 Atomic orbital electron populations 1.70365 1.05826 1.27078 1.44768 1.25154 0.95120 1.00047 0.94343 0.86378 0.79445 0.81730 0.78962 1.19853 1.20993 1.19875 1.20764 0.93505 0.87809 1.54221 0.90951 1.18987 0.92577 0.93989 0.91862 0.91188 1.20062 0.96419 0.94632 0.93970 1.21057 0.99162 0.94543 0.98616 1.20983 0.96691 0.98379 0.98622 1.20963 0.99784 0.99614 0.95365 1.21089 0.99385 0.95659 0.98523 1.21374 0.94454 0.97514 0.98975 1.22695 0.80331 0.72321 0.86783 1.92955 1.74124 1.96161 1.55495 1.93418 1.68536 1.53685 1.96253 1.93019 1.81722 1.49158 1.97065 0.92384 0.86422 0.86874 0.87090 0.86850 0.85032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.28 9.50 55.43 0.53 -22.76 15 2 C 0.06 1.60 5.20 -17.82 -0.09 1.50 15 3 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 15 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 7 C -0.53 -13.82 7.98 -34.44 -0.27 -14.10 15 8 H 0.07 1.88 7.60 -52.49 -0.40 1.48 15 9 C 0.05 1.12 2.15 -92.93 -0.20 0.92 15 10 H 0.07 1.78 7.88 -51.93 -0.41 1.37 15 11 C -0.05 -1.10 4.47 -104.62 -0.47 -1.56 15 12 C -0.12 -2.19 9.67 -39.59 -0.38 -2.58 15 13 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 15 14 C -0.14 -2.19 10.05 -39.58 -0.40 -2.58 15 15 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 15 16 C -0.11 -2.14 8.37 -39.58 -0.33 -2.47 15 17 C 0.43 10.88 2.66 37.16 0.10 10.98 15 18 F -0.21 -5.05 14.44 2.25 0.03 -5.02 15 19 F -0.14 -3.76 12.91 2.25 0.03 -3.73 15 20 F -0.23 -5.42 17.03 2.25 0.04 -5.38 15 21 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 22 H 0.12 2.06 7.95 -52.49 -0.42 1.65 15 23 H 0.11 1.49 8.06 -52.49 -0.42 1.07 15 24 H 0.11 1.40 8.06 -52.49 -0.42 0.97 15 25 H 0.11 1.62 8.06 -52.48 -0.42 1.20 15 26 H 0.13 2.77 6.39 -52.49 -0.34 2.44 15 LS Contribution 237.67 15.07 3.58 3.58 Total: -1.00 -27.71 237.67 -5.62 -33.33 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -1.96 Total: -0.65 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -2.84 Total: -14.98 kcal Atomic # 7 Polarization: -23.28 SS G_CDS: 0.53 Total: -22.76 kcal Atomic # 9 Polarization: -14.23 SS G_CDS: 0.10 Total: -14.13 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -27.71 -5.62 -33.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114257318.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.562 kcal (2) G-P(sol) polarization free energy of solvation -27.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds