Wall clock time and date at job start Mon Mar 30 2020 02:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 11 11 C 1.50701 * 109.47169 * 180.02562 * 9 7 2 12 12 C 1.38233 * 119.99787 * 299.72227 * 11 9 7 13 13 C 1.38237 * 119.99632 * 179.81074 * 12 11 9 14 14 C 1.38232 * 119.99946 * 0.39793 * 13 12 11 15 15 C 1.38226 * 120.00217 * 359.86044 * 14 13 12 16 16 C 1.38230 * 120.00131 * 359.95059 * 15 14 13 17 17 C 1.52999 * 109.47265 * 59.99739 * 9 7 2 18 18 F 1.39898 * 109.46621 * 60.00227 * 17 9 7 19 19 F 1.39899 * 109.47312 * 179.97438 * 17 9 7 20 20 F 1.39896 * 109.47210 * 300.00686 * 17 9 7 21 21 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 22 22 H 1.07998 * 120.00241 * 0.02562 * 12 11 9 23 23 H 1.08007 * 119.99942 * 180.23502 * 13 12 11 24 24 H 1.08007 * 119.99816 * 179.83178 * 14 13 12 25 25 H 1.08003 * 119.99894 * 179.97438 * 15 14 13 26 26 H 1.08003 * 120.00272 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5570 0.8898 11 6 2.2301 -3.6447 -0.0005 12 6 3.1304 -3.7843 -1.0402 13 6 4.0313 -4.8328 -1.0382 14 6 4.0263 -5.7463 -0.0007 15 6 3.1226 -5.6097 1.0362 16 6 2.2243 -4.5590 1.0362 17 6 0.3707 -2.5799 -1.2494 18 9 1.1746 -2.5056 -2.3919 19 9 -0.3284 -3.7917 -1.2497 20 9 -0.5382 -1.5165 -1.2489 21 1 -0.4850 0.8401 0.0004 22 1 3.1323 -3.0723 -1.8522 23 1 4.7372 -4.9398 -1.8486 24 1 4.7284 -6.5671 -0.0006 25 1 3.1185 -6.3237 1.8465 26 1 1.5184 -4.4520 1.8466 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114257320.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:02 Heat of formation + Delta-G solvation = -132.836044 kcal Electronic energy + Delta-G solvation = -16454.820317 eV Core-core repulsion = 13276.246757 eV Total energy + Delta-G solvation = -3178.573560 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.43626 -48.06488 -47.69535 -39.99607 -35.85278 -33.36205 -31.65617 -29.52545 -26.57035 -24.19900 -23.31537 -21.85898 -19.22894 -18.80293 -18.57553 -17.63973 -17.14885 -16.60374 -15.80534 -15.48658 -14.95104 -14.87442 -14.49556 -14.36495 -14.25348 -14.01707 -13.81472 -13.71821 -13.43905 -12.98692 -12.68295 -12.44424 -12.29098 -11.74405 -11.51288 -11.41270 -10.60912 -9.68990 -9.47933 -8.16836 -6.43152 0.57543 0.62972 1.42485 1.44365 1.52543 2.36129 2.51184 2.93355 3.07914 3.74216 3.87376 3.95950 4.16101 4.27693 4.39661 4.48237 4.77234 4.81211 5.03563 5.21805 5.33615 5.61617 5.68911 5.71942 5.83938 6.00099 6.27280 6.59546 7.25237 8.74879 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.028386 B = 0.011573 C = 0.009705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.179223 B = 2418.891395 C = 2884.409896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.014 3.986 3 Si 0.968 3.032 4 H -0.280 1.280 5 H -0.265 1.265 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.047 3.953 10 H 0.050 0.950 11 C -0.083 4.083 12 C -0.129 4.129 13 C -0.127 4.127 14 C -0.128 4.128 15 C -0.121 4.121 16 C -0.131 4.131 17 C 0.432 3.568 18 F -0.204 7.204 19 F -0.221 7.221 20 F -0.153 7.153 21 H 0.266 0.734 22 H 0.112 0.888 23 H 0.143 0.857 24 H 0.155 0.845 25 H 0.151 0.849 26 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.426 -7.657 0.179 9.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.190 4.190 3 Si 0.792 3.208 4 H -0.205 1.205 5 H -0.190 1.190 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.027 3.973 10 H 0.068 0.932 11 C -0.083 4.083 12 C -0.147 4.147 13 C -0.144 4.144 14 C -0.145 4.145 15 C -0.139 4.139 16 C -0.149 4.149 17 C 0.377 3.623 18 F -0.186 7.186 19 F -0.203 7.203 20 F -0.134 7.134 21 H 0.075 0.925 22 H 0.130 0.870 23 H 0.161 0.839 24 H 0.172 0.828 25 H 0.169 0.831 26 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.216 -7.526 0.156 9.158 hybrid contribution -0.290 1.122 -0.345 1.209 sum 4.926 -6.404 -0.189 8.082 Atomic orbital electron populations 1.70490 1.07069 1.27697 1.45713 1.25944 0.95901 1.03227 0.93958 0.85438 0.78310 0.77871 0.79137 1.20533 1.18954 1.19649 1.20990 0.93469 0.88929 1.54100 0.91368 1.18855 0.92809 0.95164 0.90450 0.93233 1.19946 0.97212 0.95023 0.96136 1.21333 0.95930 0.98940 0.98477 1.21426 0.98621 0.94533 0.99859 1.21475 0.99470 0.99721 0.93878 1.21410 0.95208 0.97599 0.99659 1.21235 1.00390 0.95136 0.98139 1.22743 0.80227 0.72100 0.87221 1.92948 1.74088 1.96162 1.55372 1.93014 1.81656 1.48579 1.97073 1.93380 1.69141 1.54564 1.96360 0.92453 0.86951 0.83940 0.82784 0.83141 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.21 9.50 21.45 0.20 -49.00 15 2 C 0.01 0.73 5.20 84.66 0.44 1.17 15 3 Si 0.97 42.51 29.54 68.60 2.03 44.54 15 4 H -0.28 -12.00 7.11 99.48 0.71 -11.29 15 5 H -0.26 -11.18 7.11 99.48 0.71 -10.47 15 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 7 C -0.54 -28.89 7.98 25.60 0.20 -28.68 15 8 H 0.07 3.62 7.61 -2.91 -0.02 3.60 15 9 C 0.05 2.38 2.15 -12.29 -0.03 2.35 15 10 H 0.05 2.65 7.88 -2.38 -0.02 2.63 15 11 C -0.08 -3.61 4.47 -19.87 -0.09 -3.69 15 12 C -0.13 -5.18 8.38 22.27 0.19 -4.99 15 13 C -0.13 -3.96 10.05 22.27 0.22 -3.74 15 14 C -0.13 -3.44 10.05 22.27 0.22 -3.21 15 15 C -0.12 -3.50 10.05 22.26 0.22 -3.27 15 16 C -0.13 -4.82 9.67 22.27 0.22 -4.60 15 17 C 0.43 22.23 2.66 71.98 0.19 22.43 15 18 F -0.20 -10.25 14.42 44.97 0.65 -9.60 15 19 F -0.22 -10.71 17.02 44.97 0.77 -9.95 15 20 F -0.15 -8.61 12.91 44.97 0.58 -8.03 15 21 H 0.27 14.22 8.31 -92.70 -0.77 13.45 15 22 H 0.11 4.83 6.37 -2.91 -0.02 4.81 15 23 H 0.14 3.54 8.06 -2.91 -0.02 3.52 15 24 H 0.15 2.88 8.06 -2.91 -0.02 2.85 15 25 H 0.15 3.21 8.06 -2.91 -0.02 3.18 15 26 H 0.12 4.21 7.95 -2.91 -0.02 4.19 15 Total: -1.00 -60.05 237.65 7.22 -52.84 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.20 Total: 5.45 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: 1.79 Total: -26.25 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.20 Total: -49.00 kcal Atomic # 9 Polarization: -29.57 SS G_CDS: 1.99 Total: -27.58 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -60.05 7.22 -52.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114257320.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.997 kcal (2) G-P(sol) polarization free energy of solvation -60.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds