Wall clock time and date at job start Mon Mar 30 2020 02:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 119.99480 * 2 1 4 4 H 1.48503 * 109.47117 * 239.99860 * 3 2 1 5 5 H 1.48504 * 109.47150 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47292 * 120.00321 * 3 2 1 7 7 C 1.39935 * 120.00589 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00234 * 191.76084 * 7 2 1 9 9 C 1.41396 * 120.00136 * 11.75780 * 7 2 1 10 10 C 1.40735 * 120.24213 * 29.19642 * 9 7 2 11 11 C 1.37600 * 119.74447 * 179.97438 * 10 9 7 12 12 C 1.38655 * 120.25099 * 0.02562 * 11 10 9 13 13 C 1.38622 * 120.49920 * 359.68327 * 12 11 10 14 14 C 1.37637 * 120.24490 * 0.59656 * 13 12 11 15 15 C 1.50704 * 120.12616 * 179.69778 * 14 13 12 16 16 H 1.08999 * 109.47143 * 338.36760 * 15 14 13 17 17 F 1.39902 * 109.46966 * 218.36049 * 15 14 13 18 18 C 1.53007 * 109.46674 * 98.36314 * 15 14 13 19 19 F 1.39894 * 109.47124 * 305.00140 * 18 15 14 20 20 F 1.39901 * 109.46751 * 184.99872 * 18 15 14 21 21 H 0.96991 * 120.00162 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.12815 * 359.95686 * 10 9 7 23 23 H 1.07997 * 119.87620 * 180.02562 * 11 10 9 24 24 H 1.07999 * 119.75248 * 179.97438 * 12 11 10 25 25 H 1.07998 * 119.87596 * 180.30030 * 13 12 11 26 26 H 1.08998 * 109.46977 * 65.00176 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6966 -1.2125 5 1 1.2770 2.7465 -0.0006 6 1 3.0959 1.6966 1.2124 7 6 2.0081 -1.2118 -0.0005 8 1 3.0711 -1.2216 0.1901 9 6 1.3235 -2.4235 -0.2506 10 6 0.1754 -2.4340 -1.0645 11 6 -0.4826 -3.6190 -1.3015 12 6 -0.0188 -4.7996 -0.7415 13 6 1.1145 -4.8020 0.0568 14 6 1.7852 -3.6276 0.3121 15 6 3.0130 -3.6322 1.1859 16 1 3.0055 -4.5199 1.8183 17 9 3.0179 -2.4870 1.9895 18 6 4.2649 -3.6433 0.3062 19 9 4.2046 -4.7265 -0.5770 20 9 5.4011 -3.7626 1.1137 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1880 -1.5155 -1.5011 23 1 -1.3636 -3.6296 -1.9260 24 1 -0.5417 -5.7251 -0.9325 25 1 1.4697 -5.7282 0.4840 26 1 4.3184 -2.7143 -0.2613 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000144342310.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:11 Heat of formation + Delta-G solvation = -141.263454 kcal Electronic energy + Delta-G solvation = -16175.142797 eV Core-core repulsion = 12996.203797 eV Total energy + Delta-G solvation = -3178.939000 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.57690 -46.94086 -46.36390 -37.67319 -33.74997 -31.75511 -29.66379 -27.70568 -25.42388 -22.73438 -21.19162 -19.95203 -17.56981 -17.12589 -16.76778 -16.47683 -15.38167 -14.95705 -14.67133 -14.16331 -13.41405 -13.26691 -12.95783 -12.89880 -12.85048 -12.57131 -11.85885 -11.66440 -11.29261 -11.20877 -11.07306 -10.95798 -10.49285 -9.92467 -9.72685 -9.42715 -9.27391 -7.61192 -7.46195 -6.82779 -4.49920 2.60486 2.80836 3.03188 3.06330 3.16981 3.88170 4.16367 4.55744 4.70400 4.98152 5.14442 5.43028 5.74455 5.79786 6.07396 6.21927 6.33847 6.55333 6.96681 7.09009 7.22912 7.42362 7.69615 7.85106 7.93600 8.11764 8.46160 8.74023 8.78932 10.11503 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.021270 B = 0.013619 C = 0.009243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.072985 B = 2055.463061 C = 3028.499067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.077 3.923 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.451 4.451 8 H 0.079 0.921 9 C 0.132 3.868 10 C -0.155 4.155 11 C -0.097 4.097 12 C -0.240 4.240 13 C -0.061 4.061 14 C -0.258 4.258 15 C 0.131 3.869 16 H 0.086 0.914 17 F -0.182 7.182 18 C 0.235 3.765 19 F -0.195 7.195 20 F -0.212 7.212 21 H 0.282 0.718 22 H 0.122 0.878 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.746 -2.426 -0.198 4.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.480 4.480 8 H 0.097 0.903 9 C 0.129 3.871 10 C -0.174 4.174 11 C -0.116 4.116 12 C -0.260 4.260 13 C -0.079 4.079 14 C -0.260 4.260 15 C 0.094 3.906 16 H 0.103 0.897 17 F -0.162 7.162 18 C 0.181 3.819 19 F -0.177 7.177 20 F -0.193 7.193 21 H 0.093 0.907 22 H 0.139 0.861 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.568 -2.246 -0.161 4.219 hybrid contribution 0.332 0.699 0.109 0.781 sum 3.900 -1.547 -0.052 4.196 Atomic orbital electron populations 1.69774 1.07515 1.29482 1.35099 1.25873 0.94805 1.01317 0.92108 0.86341 0.80163 0.80072 0.80136 1.18769 1.20221 1.18695 1.19602 0.96251 0.90463 1.41662 0.90264 1.17348 0.91274 0.91041 0.87452 1.21352 0.98496 0.96688 1.00865 1.20783 0.98308 0.93479 0.99036 1.20347 1.00725 0.96881 1.08023 1.20258 0.94929 0.95289 0.97420 1.19545 1.01591 0.95887 1.08944 1.20687 0.92900 0.86552 0.90458 0.89660 1.92879 1.97157 1.52219 1.73980 1.22808 0.83721 0.89721 0.85648 1.92946 1.96499 1.58686 1.69548 1.92943 1.54413 1.96964 1.75026 0.90668 0.86064 0.89111 0.89090 0.89046 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.92 10.93 55.55 0.61 -19.31 15 2 C 0.08 1.87 5.23 -17.34 -0.09 1.78 15 3 Si 0.91 18.32 29.58 -169.99 -5.03 13.30 15 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 15 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 15 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 15 7 C -0.45 -11.32 7.22 -37.75 -0.27 -11.59 15 8 H 0.08 1.90 5.27 -52.48 -0.28 1.63 15 9 C 0.13 3.33 5.52 -106.82 -0.59 2.74 15 10 C -0.15 -3.86 8.66 -38.87 -0.34 -4.20 15 11 C -0.10 -2.21 10.02 -39.66 -0.40 -2.60 15 12 C -0.24 -5.20 10.05 -39.29 -0.39 -5.59 15 13 C -0.06 -1.32 9.64 -39.66 -0.38 -1.70 15 14 C -0.26 -5.95 4.69 -103.91 -0.49 -6.43 15 15 C 0.13 2.69 3.42 -27.88 -0.10 2.59 15 16 H 0.09 1.56 8.02 -51.93 -0.42 1.14 15 17 F -0.18 -4.10 14.48 2.25 0.03 -4.07 15 18 C 0.24 4.42 5.00 37.16 0.19 4.61 15 19 F -0.20 -3.74 16.91 2.25 0.04 -3.71 15 20 F -0.21 -3.86 17.34 2.25 0.04 -3.82 15 21 H 0.28 6.49 8.30 -40.82 -0.34 6.15 15 22 H 0.12 3.11 6.29 -52.49 -0.33 2.78 15 23 H 0.09 1.82 8.06 -52.49 -0.42 1.40 15 24 H 0.09 1.73 8.06 -52.49 -0.42 1.30 15 25 H 0.09 1.73 8.04 -52.49 -0.42 1.31 15 26 H 0.12 2.24 6.72 -51.93 -0.35 1.90 15 LS Contribution 238.75 15.07 3.60 3.60 Total: -1.00 -26.23 238.75 -5.35 -31.57 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -1.77 Total: 2.83 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -2.86 Total: -20.39 kcal Atomic # 7 Polarization: -19.92 SS G_CDS: 0.61 Total: -19.31 kcal Atomic # 9 Polarization: -11.71 SS G_CDS: 0.11 Total: -11.60 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -26.23 -5.35 -31.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144342310.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.691 kcal (2) G-P(sol) polarization free energy of solvation -26.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds