Wall clock time and date at job start Mon Mar 30 2020 02:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 119.99480 * 2 1 4 4 H 1.48503 * 109.47117 * 239.99860 * 3 2 1 5 5 H 1.48504 * 109.47150 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47292 * 120.00321 * 3 2 1 7 7 C 1.39935 * 120.00589 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00234 * 191.76084 * 7 2 1 9 9 C 1.41396 * 120.00136 * 11.75780 * 7 2 1 10 10 C 1.40735 * 120.24213 * 29.19642 * 9 7 2 11 11 C 1.37600 * 119.74447 * 179.97438 * 10 9 7 12 12 C 1.38655 * 120.25099 * 0.02562 * 11 10 9 13 13 C 1.38622 * 120.49920 * 359.68327 * 12 11 10 14 14 C 1.37637 * 120.24490 * 0.59656 * 13 12 11 15 15 C 1.50704 * 120.12616 * 179.69778 * 14 13 12 16 16 H 1.08999 * 109.47143 * 338.36760 * 15 14 13 17 17 F 1.39902 * 109.46966 * 218.36049 * 15 14 13 18 18 C 1.53007 * 109.46674 * 98.36314 * 15 14 13 19 19 F 1.39894 * 109.47124 * 305.00140 * 18 15 14 20 20 F 1.39901 * 109.46751 * 184.99872 * 18 15 14 21 21 H 0.96991 * 120.00162 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.12815 * 359.95686 * 10 9 7 23 23 H 1.07997 * 119.87620 * 180.02562 * 11 10 9 24 24 H 1.07999 * 119.75248 * 179.97438 * 12 11 10 25 25 H 1.07998 * 119.87596 * 180.30030 * 13 12 11 26 26 H 1.08998 * 109.46977 * 65.00176 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6966 -1.2125 5 1 1.2770 2.7465 -0.0006 6 1 3.0959 1.6966 1.2124 7 6 2.0081 -1.2118 -0.0005 8 1 3.0711 -1.2216 0.1901 9 6 1.3235 -2.4235 -0.2506 10 6 0.1754 -2.4340 -1.0645 11 6 -0.4826 -3.6190 -1.3015 12 6 -0.0188 -4.7996 -0.7415 13 6 1.1145 -4.8020 0.0568 14 6 1.7852 -3.6276 0.3121 15 6 3.0130 -3.6322 1.1859 16 1 3.0055 -4.5199 1.8183 17 9 3.0179 -2.4870 1.9895 18 6 4.2649 -3.6433 0.3062 19 9 4.2046 -4.7265 -0.5770 20 9 5.4011 -3.7626 1.1137 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1880 -1.5155 -1.5011 23 1 -1.3636 -3.6296 -1.9260 24 1 -0.5417 -5.7251 -0.9325 25 1 1.4697 -5.7282 0.4840 26 1 4.3184 -2.7143 -0.2613 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144342310.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:10 Heat of formation + Delta-G solvation = -153.597297 kcal Electronic energy + Delta-G solvation = -16175.677632 eV Core-core repulsion = 12996.203797 eV Total energy + Delta-G solvation = -3179.473836 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.09503 -48.59982 -47.89686 -39.43470 -35.54025 -33.45076 -31.45900 -29.36900 -27.21045 -24.35847 -22.97590 -21.66369 -19.33057 -18.70042 -18.32085 -18.06972 -17.12342 -16.61962 -16.33095 -15.85472 -14.95667 -14.92253 -14.66385 -14.55193 -14.37758 -14.30273 -13.54688 -13.29546 -13.02383 -12.88179 -12.74914 -12.63480 -12.13104 -11.55707 -11.45216 -11.18437 -11.04300 -9.38091 -9.27219 -8.61333 -6.36087 0.84261 1.05473 1.39438 1.49172 1.54012 2.21289 2.58278 2.78697 3.17244 3.41913 3.56786 3.71393 4.07324 4.24220 4.43102 4.59651 4.64471 4.88523 5.16007 5.29483 5.44688 5.64761 5.92937 6.04889 6.14293 6.31785 6.64603 6.90581 6.98083 8.35040 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.021270 B = 0.013619 C = 0.009243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.072985 B = 2055.463061 C = 3028.499067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.036 3.964 3 Si 0.972 3.028 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.477 4.477 8 H 0.082 0.918 9 C 0.102 3.898 10 C -0.184 4.184 11 C -0.102 4.102 12 C -0.239 4.239 13 C -0.067 4.067 14 C -0.265 4.265 15 C 0.126 3.874 16 H 0.112 0.888 17 F -0.196 7.196 18 C 0.246 3.754 19 F -0.196 7.196 20 F -0.206 7.206 21 H 0.287 0.713 22 H 0.103 0.897 23 H 0.112 0.888 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.313 -3.261 -0.057 5.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.179 4.179 3 Si 0.793 3.207 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.506 4.506 8 H 0.100 0.900 9 C 0.099 3.901 10 C -0.204 4.204 11 C -0.121 4.121 12 C -0.258 4.258 13 C -0.085 4.085 14 C -0.267 4.267 15 C 0.090 3.910 16 H 0.130 0.870 17 F -0.176 7.176 18 C 0.192 3.808 19 F -0.177 7.177 20 F -0.188 7.188 21 H 0.097 0.903 22 H 0.121 0.879 23 H 0.130 0.870 24 H 0.141 0.859 25 H 0.141 0.859 26 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.136 -3.097 -0.024 5.167 hybrid contribution 0.112 0.803 0.064 0.813 sum 4.248 -2.294 0.040 4.828 Atomic orbital electron populations 1.69842 1.08790 1.30423 1.36308 1.26657 0.95500 1.04279 0.91463 0.85384 0.78932 0.76247 0.80089 1.18057 1.19416 1.18742 1.19815 0.96517 0.91260 1.42990 0.90040 1.17691 0.91936 0.92240 0.88185 1.21355 0.99691 0.97057 1.02271 1.21083 0.98743 0.93190 0.99054 1.20771 1.00564 0.97625 1.06822 1.20671 0.94667 0.96076 0.97060 1.19877 1.02428 0.95707 1.08696 1.20867 0.92641 0.86908 0.90631 0.87011 1.92847 1.97208 1.53229 1.74353 1.22550 0.83213 0.89734 0.85274 1.92947 1.96492 1.58714 1.69536 1.92956 1.53964 1.96943 1.74898 0.90274 0.87876 0.86965 0.85924 0.85882 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.46 10.93 21.82 0.24 -42.22 15 2 C 0.04 1.75 5.23 85.25 0.45 2.20 15 3 Si 0.97 37.71 29.58 68.60 2.03 39.74 15 4 H -0.26 -9.56 7.11 99.48 0.71 -8.85 15 5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 15 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 15 7 C -0.48 -24.21 7.22 23.46 0.17 -24.04 15 8 H 0.08 3.94 5.27 -2.91 -0.02 3.93 15 9 C 0.10 5.19 5.52 -21.29 -0.12 5.08 15 10 C -0.18 -9.32 8.66 22.73 0.20 -9.13 15 11 C -0.10 -4.53 10.02 22.22 0.22 -4.30 15 12 C -0.24 -9.70 10.05 22.46 0.23 -9.47 15 13 C -0.07 -2.72 9.64 22.22 0.21 -2.50 15 14 C -0.27 -11.92 4.69 -19.40 -0.09 -12.01 15 15 C 0.13 4.97 3.42 29.85 0.10 5.07 15 16 H 0.11 3.77 8.02 -2.39 -0.02 3.75 15 17 F -0.20 -8.68 14.48 44.97 0.65 -8.03 15 18 C 0.25 8.84 5.00 71.98 0.36 9.20 15 19 F -0.20 -7.07 16.91 44.97 0.76 -6.31 15 20 F -0.21 -7.09 17.34 44.97 0.78 -6.31 15 21 H 0.29 13.45 8.30 -92.71 -0.77 12.68 15 22 H 0.10 5.49 6.29 -2.91 -0.02 5.47 15 23 H 0.11 4.34 8.06 -2.91 -0.02 4.32 15 24 H 0.12 4.17 8.06 -2.91 -0.02 4.14 15 25 H 0.12 4.18 8.04 -2.91 -0.02 4.16 15 26 H 0.12 4.41 6.72 -2.39 -0.02 4.40 15 Total: -1.00 -55.15 238.75 7.40 -47.75 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 1.21 Total: 15.29 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 1.73 Total: -39.91 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.24 Total: -42.22 kcal Atomic # 9 Polarization: -22.84 SS G_CDS: 2.19 Total: -20.65 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Total: -55.15 7.40 -47.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144342310.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.846 kcal (2) G-P(sol) polarization free energy of solvation -55.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds